Wall clock time and date at job start Tue Mar 31 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47227 * 2 1 4 4 H 1.09001 * 109.47440 * 305.69668 * 3 2 1 5 5 C 1.50700 * 109.47105 * 185.69425 * 3 2 1 6 6 H 1.08005 * 119.99741 * 275.00495 * 5 3 2 7 7 C 1.37874 * 120.00127 * 95.00567 * 5 3 2 8 8 N 1.31519 * 119.99782 * 184.82689 * 7 5 3 9 9 Si 1.86791 * 119.99991 * 4.83162 * 7 5 3 10 10 H 1.48501 * 109.47552 * 84.86069 * 9 7 5 11 11 H 1.48502 * 109.47372 * 204.86165 * 9 7 5 12 12 H 1.48504 * 109.47016 * 324.86042 * 9 7 5 13 13 N 1.46503 * 109.47099 * 65.69689 * 3 2 1 14 14 C 1.34781 * 119.99720 * 274.99624 * 13 3 2 15 15 O 1.21273 * 119.99804 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99663 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.46760 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47268 * 60.00019 * 17 16 14 19 19 O 1.42901 * 109.47181 * 300.00203 * 17 16 14 20 20 C 1.50702 * 109.47051 * 180.02562 * 17 16 14 21 21 C 1.38238 * 119.99973 * 329.72655 * 20 17 16 22 22 C 1.38233 * 119.99820 * 179.78910 * 21 20 17 23 23 C 1.38237 * 120.00013 * 0.44220 * 22 21 20 24 24 C 1.38232 * 119.99957 * 359.81274 * 23 22 21 25 25 C 1.38230 * 120.00185 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.46878 * 59.99263 * 1 2 3 27 27 H 1.09004 * 109.46880 * 299.99827 * 1 2 3 28 28 H 1.09000 * 109.47168 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46878 * 120.00737 * 2 1 3 30 30 H 1.09004 * 109.46880 * 240.00173 * 2 1 3 31 31 H 0.97003 * 119.99388 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00154 * 94.99717 * 13 3 2 33 33 H 1.09002 * 109.47208 * 300.00005 * 16 14 13 34 34 H 1.08999 * 109.47155 * 60.00335 * 16 14 13 35 35 H 1.09002 * 109.47196 * 59.99909 * 18 17 16 36 36 H 1.08997 * 109.47042 * 179.97438 * 18 17 16 37 37 H 1.08998 * 109.47146 * 299.99871 * 18 17 16 38 38 H 0.96700 * 113.99764 * 299.99713 * 19 17 16 39 39 H 1.08001 * 119.99557 * 359.97438 * 21 20 17 40 40 H 1.07999 * 119.99577 * 180.27062 * 22 21 20 41 41 H 1.07995 * 119.99534 * 179.83434 * 23 22 21 42 42 H 1.07995 * 119.99716 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00354 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5959 1.9849 -0.8346 5 6 3.5404 1.4447 -0.1410 6 1 4.1651 1.3332 0.7330 7 6 4.1157 1.5892 -1.3856 8 7 5.4205 1.4963 -1.5217 9 14 3.0419 1.9171 -2.8784 10 1 2.7755 3.3740 -2.9863 11 1 3.7402 1.4497 -4.1028 12 1 1.7562 1.1883 -2.7331 13 7 1.6669 2.0923 1.2588 14 6 0.4510 2.6588 1.3902 15 8 -0.3343 2.6301 0.4664 16 6 0.0669 3.3269 2.6853 17 6 -1.3537 3.8833 2.5704 18 6 -2.3272 2.7397 2.2780 19 8 -1.4070 4.8375 1.5080 20 6 -1.7376 4.5519 3.8652 21 6 -1.2099 4.0989 5.0600 22 6 -1.5587 4.7150 6.2473 23 6 -2.4422 5.7782 6.2408 24 6 -2.9739 6.2277 5.0466 25 6 -2.6217 5.6145 3.8589 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5140 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 5.8252 1.5977 -2.3975 32 1 2.2949 2.1149 1.9978 33 1 0.1071 2.5988 3.4956 34 1 0.7607 4.1413 2.8938 35 1 -2.2866 2.0118 3.0883 36 1 -3.3393 3.1361 2.1966 37 1 -2.0494 2.2566 1.3413 38 1 -0.8138 5.5919 1.6269 39 1 -0.5229 3.2656 5.0654 40 1 -1.1430 4.3639 7.1802 41 1 -2.7167 6.2577 7.1687 42 1 -3.6638 7.0585 5.0416 43 1 -3.0368 5.9659 2.9259 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183876589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:09 Heat of formation + Delta-G solvation = -91.217356 kcal Electronic energy + Delta-G solvation = -23824.078596 eV Core-core repulsion = 20446.967154 eV Total energy + Delta-G solvation = -3377.111442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.37014 -40.11302 -38.02398 -36.67532 -34.35856 -33.84329 -33.07582 -31.73776 -30.67456 -29.64867 -28.48388 -24.84624 -24.19435 -23.40463 -22.17379 -21.21374 -20.91857 -19.34444 -18.54492 -17.56848 -17.14916 -17.10323 -16.46418 -16.06145 -15.84552 -15.59129 -15.36488 -14.83596 -14.77817 -14.57265 -14.16305 -14.04804 -13.74889 -13.64267 -13.47747 -13.18061 -12.98301 -12.89881 -12.68066 -12.49492 -12.43091 -12.27242 -11.97214 -11.86543 -11.67161 -11.60764 -11.18546 -11.00227 -10.82337 -10.29567 -9.78578 -9.65660 -9.56152 -8.38836 -6.43519 0.43394 0.53418 1.28288 1.33019 1.43997 1.96415 2.26881 2.53554 2.89405 3.03603 3.38017 3.68213 3.74008 4.08372 4.16154 4.20280 4.28804 4.34031 4.37140 4.45095 4.55329 4.61379 4.67766 4.72112 4.79603 4.86869 4.97822 4.99792 5.13218 5.13471 5.20347 5.27864 5.31754 5.44398 5.47086 5.59273 5.60933 5.65926 5.70763 5.89548 6.13882 6.17369 6.62297 6.87483 7.04990 7.23365 7.65981 8.76341 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.003813 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.285769 B = 7341.232652 C = 7432.563241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.244 3.756 4 H 0.027 0.973 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.033 3.967 8 N -0.932 5.932 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.279 1.279 12 H -0.257 1.257 13 N -0.709 5.709 14 C 0.499 3.501 15 O -0.561 6.561 16 C -0.161 4.161 17 C 0.197 3.803 18 C -0.145 4.145 19 O -0.557 6.557 20 C -0.120 4.120 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.126 4.126 24 C -0.128 4.128 25 C -0.117 4.117 26 H 0.030 0.970 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.269 0.731 32 H 0.402 0.598 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.379 0.621 39 H 0.138 0.862 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.137 0.863 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.373 6.756 16.672 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.162 4.162 3 C 0.139 3.861 4 H 0.045 0.955 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.750 3.250 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.181 1.181 13 N -0.359 5.359 14 C 0.287 3.713 15 O -0.441 6.441 16 C -0.201 4.201 17 C 0.156 3.844 18 C -0.202 4.202 19 O -0.363 6.363 20 C -0.121 4.121 21 C -0.139 4.139 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.146 4.146 25 C -0.135 4.135 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.142 0.858 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.227 0.773 39 H 0.156 0.844 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.210 6.305 15.635 23.387 hybrid contribution 0.824 0.548 -0.586 1.150 sum -15.386 6.853 15.049 22.587 Atomic orbital electron populations 1.21776 0.95722 1.00157 1.01331 1.21976 0.95085 0.98137 1.00976 1.18817 0.92879 0.90170 0.84194 0.95507 1.21266 0.90585 1.50007 0.94424 0.92602 1.25576 0.95676 0.94116 1.01329 1.69985 1.11201 1.50682 1.25172 0.86080 0.79928 0.79152 0.79799 1.20220 1.20504 1.18095 1.46371 1.15767 1.56731 1.17067 1.20947 0.81567 0.78461 0.90373 1.90638 1.50831 1.59918 1.42673 1.22517 0.98630 1.02957 0.95973 1.19570 0.92761 0.88502 0.83575 1.21951 0.98057 0.96670 1.03502 1.86667 1.67083 1.36272 1.46254 1.20492 0.98955 0.97480 0.95126 1.21349 1.00116 1.00577 0.91842 1.21472 0.97964 0.96303 0.98573 1.21516 0.97062 0.97041 0.98714 1.21412 1.00413 1.00441 0.92356 1.21106 0.97435 0.96012 0.98953 0.95059 0.92592 0.92686 0.91985 0.93623 0.92139 0.76336 0.85779 0.87205 0.90450 0.92857 0.91056 0.77325 0.84415 0.83849 0.83961 0.84474 0.86092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.53 71.98 0.61 -4.41 16 2 C -0.12 -5.15 5.59 30.59 0.17 -4.98 16 3 C 0.24 11.24 1.89 44.24 0.08 11.32 16 4 H 0.03 1.38 4.73 -2.39 -0.01 1.37 16 5 C -0.52 -28.14 9.05 25.60 0.23 -27.91 16 6 H 0.06 3.18 8.06 -2.91 -0.02 3.16 16 7 C 0.03 1.87 5.47 84.65 0.46 2.34 16 8 N -0.93 -55.69 13.96 21.45 0.30 -55.39 16 9 Si 0.92 45.28 26.99 68.60 1.85 47.13 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.26 -12.35 6.82 99.48 0.68 -11.67 16 13 N -0.71 -26.52 5.03 -446.10 -2.24 -28.77 16 14 C 0.50 17.17 5.99 87.66 0.53 17.70 16 15 O -0.56 -23.29 10.10 14.44 0.15 -23.15 16 16 C -0.16 -3.80 4.26 29.85 0.13 -3.67 16 17 C 0.20 4.84 0.81 -11.54 -0.01 4.83 16 18 C -0.14 -3.90 8.51 71.98 0.61 -3.29 16 19 O -0.56 -15.90 10.86 -131.53 -1.43 -17.33 16 20 C -0.12 -2.46 4.80 -19.86 -0.10 -2.56 16 21 C -0.12 -2.07 9.14 22.27 0.20 -1.87 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.62 16 23 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 24 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 25 C -0.12 -2.34 9.35 22.27 0.21 -2.13 16 26 H 0.03 1.29 7.89 -2.39 -0.02 1.27 16 27 H 0.06 2.05 5.63 -2.38 -0.01 2.03 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.42 16 30 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.40 13.15 8.59 -92.71 -0.80 12.35 16 33 H 0.12 2.25 6.51 -2.39 -0.02 2.23 16 34 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 2.39 5.51 -2.39 -0.01 2.38 16 38 H 0.38 8.50 9.04 -74.06 -0.67 7.83 16 39 H 0.14 1.92 6.17 -2.91 -0.02 1.90 16 40 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 42 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.12 2.52 7.48 -2.91 -0.02 2.49 16 Total: -1.00 -68.92 342.44 1.96 -66.95 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -0.47 Total: 30.26 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.81 Total: -19.70 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.94 Total: -84.16 kcal Atomic # 8 Polarization: -39.19 SS G_CDS: -1.28 Total: -40.48 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.85 Total: 47.13 kcal Total: -68.92 1.96 -66.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183876589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.266 kcal (2) G-P(sol) polarization free energy of solvation -68.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds