Wall clock time and date at job start Tue Mar 31 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.35895 * 117.00047 * 180.02562 * 17 16 14 19 19 C 1.38736 * 120.05541 * 269.72980 * 18 17 16 20 20 C 1.50693 * 120.02673 * 359.97438 * 19 18 17 21 21 C 1.38141 * 119.93943 * 179.70087 * 19 18 17 22 22 C 1.38265 * 120.06237 * 0.59670 * 21 19 18 23 23 C 1.38270 * 120.10646 * 359.67821 * 22 21 19 24 24 C 1.38141 * 120.05781 * 0.02562 * 23 22 21 25 25 C 1.50702 * 120.03032 * 179.97438 * 24 23 22 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.09001 * 109.47087 * 90.00753 * 20 19 18 36 36 H 1.08999 * 109.47172 * 209.99774 * 20 19 18 37 37 H 1.08998 * 109.47809 * 330.00491 * 20 19 18 38 38 H 1.08008 * 119.97276 * 180.27169 * 21 19 18 39 39 H 1.07993 * 119.94965 * 179.69925 * 22 21 19 40 40 H 1.08002 * 119.96981 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46764 * 270.02313 * 25 24 23 42 42 H 1.08993 * 109.46875 * 30.02755 * 25 24 23 43 43 H 1.09004 * 109.46570 * 150.02374 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7611 4.4850 -3.6689 19 6 -1.5827 5.8529 -3.8166 20 6 -0.8323 6.6330 -2.7682 21 6 -2.0888 6.4981 -4.9282 22 6 -2.7833 5.7841 -5.8872 23 6 -2.9673 4.4217 -5.7396 24 6 -2.4579 3.7707 -4.6328 25 6 -2.6593 2.2858 -4.4722 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 0.2282 6.6521 -3.0193 36 1 -1.2151 7.6528 -2.7307 37 1 -0.9669 6.1584 -1.7962 38 1 -1.9465 7.5623 -5.0458 39 1 -3.1823 6.2913 -6.7531 40 1 -3.5097 3.8661 -6.4902 41 1 -3.5855 2.1016 -3.9278 42 1 -2.7165 1.8186 -5.4552 43 1 -1.8215 1.8635 -3.9173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183915246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:41 Heat of formation + Delta-G solvation = -64.805580 kcal Electronic energy + Delta-G solvation = -23448.177630 eV Core-core repulsion = 20072.211488 eV Total energy + Delta-G solvation = -3375.966141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42875 -39.11254 -37.17492 -35.15629 -33.74096 -32.51526 -31.65687 -31.22826 -28.73735 -27.22700 -26.79163 -26.22272 -22.42947 -21.95179 -21.04032 -20.73408 -19.56265 -17.95899 -17.79430 -16.70676 -16.36621 -15.78231 -15.34745 -15.06873 -14.60746 -14.11394 -13.82874 -13.55515 -13.40341 -13.24101 -13.14303 -12.82391 -12.72743 -12.50009 -12.43855 -12.21328 -12.04226 -11.73680 -11.67960 -11.38360 -11.32512 -10.82027 -10.70977 -10.44102 -9.94129 -9.87092 -9.78616 -9.23623 -9.12802 -8.76870 -8.65424 -8.27426 -8.12717 -6.63584 -4.22777 1.01038 1.14395 3.07989 3.16172 3.40690 3.45884 3.59340 3.62999 4.31556 4.43004 4.61477 4.64616 4.77023 5.05674 5.06198 5.09432 5.18124 5.25057 5.29768 5.36773 5.42878 5.51929 5.55721 5.64103 5.66233 5.97626 6.07527 6.09758 6.13515 6.25859 6.27604 6.28460 6.42440 6.59175 6.68825 6.79721 6.94843 7.04478 7.32738 7.37259 7.50677 7.65094 8.22233 8.42824 8.67955 8.93635 9.41901 10.74384 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.003617 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.628508 B = 7740.412828 C = 8144.828897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.253 3.747 4 H 0.041 0.959 5 C -0.630 4.630 6 H 0.063 0.937 7 C 0.050 3.950 8 N -0.885 5.885 9 Si 1.029 2.971 10 H -0.283 1.283 11 H -0.280 1.280 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.503 3.497 15 O -0.527 6.527 16 C 0.047 3.953 17 O -0.304 6.304 18 C 0.092 3.908 19 C -0.095 4.095 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.096 4.096 25 C -0.112 4.112 26 H 0.048 0.952 27 H 0.030 0.970 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.271 0.729 32 H 0.393 0.607 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.667 8.179 -14.849 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.150 3.850 4 H 0.059 0.941 5 C -0.667 4.667 6 H 0.081 0.919 7 C -0.159 4.159 8 N -0.517 5.517 9 Si 0.855 3.145 10 H -0.208 1.208 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.286 3.714 15 O -0.404 6.404 16 C -0.031 4.031 17 O -0.220 6.220 18 C 0.048 3.952 19 C -0.095 4.095 20 C -0.174 4.174 21 C -0.136 4.136 22 C -0.137 4.137 23 C -0.136 4.136 24 C -0.096 4.096 25 C -0.169 4.169 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.150 7.816 -12.347 20.341 hybrid contribution 0.343 0.387 -2.369 2.425 sum -13.806 8.203 -14.716 21.782 Atomic orbital electron populations 1.21899 0.97343 0.98903 1.02037 1.22237 0.93713 0.99671 1.01426 1.19028 0.95775 0.88448 0.81742 0.94104 1.21972 0.89644 1.50205 1.04906 0.91911 1.25606 0.96587 0.91618 1.02079 1.70873 1.13884 1.36346 1.30570 0.84235 0.76071 0.77715 0.76437 1.20820 1.20626 1.19861 1.46172 1.14029 1.56334 1.18432 1.19934 0.83135 0.79821 0.88475 1.90702 1.50352 1.58577 1.40758 1.22529 0.84119 0.98628 0.97831 1.86120 1.29063 1.73430 1.33349 1.18444 0.98397 0.90089 0.88252 1.20283 0.99278 0.93580 0.96370 1.20761 0.99325 0.99309 0.98009 1.20931 0.99030 0.99903 0.93706 1.21126 0.99190 0.94236 0.99194 1.20915 1.00643 0.94596 0.97435 1.20275 0.98821 0.96890 0.93652 1.20726 1.03187 0.90799 1.02184 0.93289 0.95064 0.92970 0.93152 0.91801 0.91857 0.77470 0.90439 0.90551 0.91202 0.91399 0.90301 0.85740 0.85891 0.85756 0.90696 0.91587 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.53 37.16 0.32 -2.64 16 2 C -0.13 -2.93 5.37 -26.73 -0.14 -3.07 16 3 C 0.25 5.97 1.84 -69.09 -0.13 5.85 16 4 H 0.04 1.06 6.12 -51.93 -0.32 0.74 16 5 C -0.63 -16.72 8.92 -34.44 -0.31 -17.03 16 6 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 7 C 0.05 1.37 5.15 -17.82 -0.09 1.28 16 8 N -0.89 -25.84 13.70 55.43 0.76 -25.08 16 9 Si 1.03 24.87 26.56 -169.99 -4.51 20.36 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.27 -6.28 6.34 56.52 0.36 -5.92 16 13 N -0.70 -13.77 5.03 -54.93 -0.28 -14.04 16 14 C 0.50 9.54 6.51 -10.98 -0.07 9.47 16 15 O -0.53 -11.95 13.64 -14.35 -0.20 -12.15 16 16 C 0.05 0.69 6.17 36.01 0.22 0.91 16 17 O -0.30 -4.83 7.85 -39.32 -0.31 -5.14 16 18 C 0.09 1.25 5.67 -39.21 -0.22 1.03 16 19 C -0.09 -1.14 5.89 -104.48 -0.62 -1.76 16 20 C -0.12 -1.31 9.79 36.00 0.35 -0.95 16 21 C -0.12 -1.17 9.70 -39.61 -0.38 -1.55 16 22 C -0.12 -1.09 10.04 -39.56 -0.40 -1.49 16 23 C -0.12 -1.16 9.70 -39.61 -0.38 -1.54 16 24 C -0.10 -1.14 5.89 -104.47 -0.62 -1.76 16 25 C -0.11 -1.22 9.79 36.01 0.35 -0.86 16 26 H 0.05 0.99 5.63 -51.93 -0.29 0.70 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.49 5.77 -51.93 -0.30 1.19 16 31 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 32 H 0.39 6.75 8.53 -40.82 -0.35 6.40 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.95 7.26 -51.93 -0.38 0.57 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.08 1.04 7.53 -51.93 -0.39 0.65 16 38 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 43 H 0.07 0.84 6.33 -51.93 -0.33 0.51 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -31.45 349.09 -7.99 -39.44 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -6.60 Total: 5.49 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -2.12 Total: -14.13 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.48 Total: -39.13 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.50 Total: -17.29 kcal Atomic # 14 Polarization: 24.87 SS G_CDS: -4.51 Total: 20.36 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.45 -7.99 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183915246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.366 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds