Wall clock time and date at job start Tue Mar 31 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86800 * 119.99811 * 333.95909 * 7 5 3 10 10 H 1.48501 * 109.46792 * 180.02562 * 9 7 5 11 11 H 1.48504 * 109.46850 * 299.99560 * 9 7 5 12 12 H 1.48492 * 109.47278 * 59.99696 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.35895 * 117.00047 * 180.02562 * 17 16 14 19 19 C 1.38736 * 120.05541 * 269.72980 * 18 17 16 20 20 C 1.50693 * 120.02673 * 359.97438 * 19 18 17 21 21 C 1.38141 * 119.93943 * 179.70087 * 19 18 17 22 22 C 1.38265 * 120.06237 * 0.59670 * 21 19 18 23 23 C 1.38270 * 120.10646 * 359.67821 * 22 21 19 24 24 C 1.38141 * 120.05781 * 0.02562 * 23 22 21 25 25 C 1.50702 * 120.03032 * 179.97438 * 24 23 22 26 26 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 27 27 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96996 * 120.00478 * 354.97061 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.09001 * 109.47087 * 90.00753 * 20 19 18 36 36 H 1.08999 * 109.47172 * 209.99774 * 20 19 18 37 37 H 1.08998 * 109.47809 * 330.00491 * 20 19 18 38 38 H 1.08008 * 119.97276 * 180.27169 * 21 19 18 39 39 H 1.07993 * 119.94965 * 179.69925 * 22 21 19 40 40 H 1.08002 * 119.96981 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.46764 * 270.02313 * 25 24 23 42 42 H 1.08993 * 109.46875 * 30.02755 * 25 24 23 43 43 H 1.09004 * 109.46570 * 150.02374 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1763 1.0612 2.9141 10 1 4.0195 0.5178 4.0091 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7611 4.4850 -3.6689 19 6 -1.5827 5.8529 -3.8166 20 6 -0.8323 6.6330 -2.7682 21 6 -2.0888 6.4981 -4.9282 22 6 -2.7833 5.7841 -5.8872 23 6 -2.9673 4.4217 -5.7396 24 6 -2.4579 3.7707 -4.6328 25 6 -2.6593 2.2858 -4.4722 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8117 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 0.2282 6.6521 -3.0193 36 1 -1.2151 7.6528 -2.7307 37 1 -0.9669 6.1584 -1.7962 38 1 -1.9465 7.5623 -5.0458 39 1 -3.1823 6.2913 -6.7531 40 1 -3.5097 3.8661 -6.4902 41 1 -3.5855 2.1016 -3.9278 42 1 -2.7165 1.8186 -5.4552 43 1 -1.8215 1.8635 -3.9173 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183915246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:40 Heat of formation + Delta-G solvation = -83.484367 kcal Electronic energy + Delta-G solvation = -23448.987603 eV Core-core repulsion = 20072.211488 eV Total energy + Delta-G solvation = -3376.776114 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.44593 -40.55539 -38.23703 -36.93557 -34.54890 -34.51083 -33.33255 -32.12323 -30.09714 -28.74491 -27.56410 -27.40289 -24.33001 -22.88357 -22.31523 -21.85219 -21.29115 -19.88903 -18.84318 -17.92112 -17.71598 -17.20202 -16.54946 -16.25238 -15.89361 -15.40673 -14.97733 -14.94169 -14.78254 -14.47306 -14.38221 -14.10459 -13.89776 -13.87470 -13.78939 -13.61310 -13.49258 -12.87617 -12.67145 -12.52285 -12.48616 -12.33784 -12.26346 -12.13143 -11.78301 -11.59524 -11.24410 -10.93897 -10.74307 -10.41822 -9.85292 -9.55077 -9.50235 -8.82283 -6.41386 0.17225 0.36056 1.46311 1.48396 1.65401 1.69585 1.92781 2.41537 2.66138 2.92085 3.13655 3.78503 3.82470 3.87104 4.04103 4.09243 4.11190 4.30017 4.37804 4.38826 4.45348 4.51759 4.55204 4.60225 4.69893 4.73753 4.84040 4.84875 4.90966 5.07748 5.15444 5.19478 5.27869 5.30323 5.50276 5.50921 5.53281 5.60851 5.62633 5.68408 5.84495 6.02554 6.49000 6.54461 6.80590 7.25316 7.39348 8.54955 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.026926 B = 0.003617 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.628508 B = 7740.412828 C = 8144.828897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.128 4.128 3 C 0.257 3.743 4 H 0.020 0.980 5 C -0.627 4.627 6 H 0.045 0.955 7 C 0.009 3.991 8 N -0.914 5.914 9 Si 1.060 2.940 10 H -0.280 1.280 11 H -0.275 1.275 12 H -0.256 1.256 13 N -0.698 5.698 14 C 0.503 3.497 15 O -0.566 6.566 16 C 0.058 3.942 17 O -0.328 6.328 18 C 0.059 3.941 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.111 4.111 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.263 0.737 32 H 0.405 0.595 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 8.990 -17.023 24.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.152 3.848 4 H 0.037 0.963 5 C -0.664 4.664 6 H 0.063 0.937 7 C -0.194 4.194 8 N -0.547 5.547 9 Si 0.883 3.117 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.181 1.181 13 N -0.349 5.349 14 C 0.289 3.711 15 O -0.445 6.445 16 C -0.020 4.020 17 O -0.244 6.244 18 C 0.016 3.984 19 C -0.111 4.111 20 C -0.171 4.171 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.110 4.110 25 C -0.168 4.168 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.240 0.760 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.069 0.931 38 H 0.166 0.834 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.945 8.637 -14.562 23.257 hybrid contribution 0.865 0.220 -1.819 2.027 sum -15.079 8.857 -16.382 23.962 Atomic orbital electron populations 1.21769 0.95711 1.00328 1.01269 1.22125 0.95056 0.98348 1.01142 1.18731 0.93618 0.89485 0.82930 0.96259 1.22134 0.91254 1.48890 1.04114 0.93680 1.26597 0.96709 0.91285 1.04830 1.70957 1.14971 1.38688 1.30124 0.83807 0.75856 0.78265 0.73818 1.20494 1.20099 1.18084 1.45968 1.14957 1.56391 1.17595 1.20598 0.82046 0.78842 0.89568 1.90679 1.51361 1.59913 1.42574 1.22390 0.84755 0.99485 0.95353 1.86083 1.29211 1.73986 1.35134 1.18745 1.00109 0.90885 0.88646 1.20463 1.00025 0.93229 0.97368 1.20730 0.99888 1.00023 0.96469 1.21255 0.98312 1.01181 0.92921 1.21552 0.97820 0.94053 0.99677 1.21259 1.00055 0.95238 0.97049 1.20472 0.99086 0.97355 0.94088 1.20726 1.02196 0.90625 1.03209 0.93330 0.92455 0.94485 0.92479 0.93029 0.92778 0.76011 0.88558 0.88098 0.90640 0.89467 0.93130 0.83354 0.82686 0.83211 0.91131 0.89224 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.32 8.53 71.98 0.61 -4.71 16 2 C -0.13 -5.61 5.37 30.60 0.16 -5.45 16 3 C 0.26 12.14 1.84 44.25 0.08 12.23 16 4 H 0.02 1.02 6.12 -2.39 -0.01 1.00 16 5 C -0.63 -33.64 8.92 25.60 0.23 -33.41 16 6 H 0.04 2.53 7.96 -2.91 -0.02 2.51 16 7 C 0.01 0.51 5.15 84.66 0.44 0.95 16 8 N -0.91 -54.23 13.70 21.45 0.29 -53.94 16 9 Si 1.06 50.43 26.56 68.60 1.82 52.25 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.42 6.34 99.48 0.63 -10.79 16 13 N -0.70 -27.33 5.03 -446.10 -2.24 -29.57 16 14 C 0.50 19.03 6.51 87.66 0.57 19.60 16 15 O -0.57 -25.97 13.64 16.00 0.22 -25.75 16 16 C 0.06 1.64 6.17 71.24 0.44 2.08 16 17 O -0.33 -10.41 7.85 -73.33 -0.58 -10.98 16 18 C 0.06 1.56 5.67 22.51 0.13 1.69 16 19 C -0.11 -2.50 5.89 -19.77 -0.12 -2.62 16 20 C -0.11 -2.46 9.79 71.23 0.70 -1.76 16 21 C -0.12 -2.01 9.70 22.25 0.22 -1.80 16 22 C -0.11 -1.64 10.04 22.28 0.22 -1.42 16 23 C -0.12 -1.95 9.70 22.25 0.22 -1.74 16 24 C -0.11 -2.42 5.89 -19.77 -0.12 -2.54 16 25 C -0.11 -2.25 9.79 71.24 0.70 -1.55 16 26 H 0.05 1.92 5.63 -2.39 -0.01 1.91 16 27 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 28 H 0.04 1.57 7.89 -2.39 -0.02 1.55 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 2.38 5.77 -2.39 -0.01 2.36 16 31 H 0.26 15.52 8.73 -92.71 -0.81 14.71 16 32 H 0.41 13.73 8.53 -92.71 -0.79 12.94 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.10 2.37 7.26 -2.39 -0.02 2.35 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.09 1.46 8.09 -2.39 -0.02 1.44 16 37 H 0.05 1.36 7.53 -2.39 -0.02 1.34 16 38 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 39 H 0.16 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.09 1.32 8.09 -2.39 -0.02 1.30 16 43 H 0.05 1.23 6.33 -2.38 -0.02 1.21 16 Total: -1.00 -69.05 349.09 4.10 -64.95 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.10 Total: 23.47 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 4.48 Total: -20.43 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -1.95 Total: -83.50 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.36 Total: -36.74 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 1.82 Total: 52.25 kcal Total: -69.05 4.10 -64.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183915246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.534 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds