Wall clock time and date at job start Tue Mar 31 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 H 1.09003 * 109.47011 * 304.99823 * 3 2 1 5 5 C 1.50702 * 109.47536 * 184.99912 * 3 2 1 6 6 H 1.07996 * 120.00091 * 239.99642 * 5 3 2 7 7 C 1.37882 * 119.99692 * 59.99634 * 5 3 2 8 8 N 1.31513 * 120.00091 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46860 * 60.00033 * 9 7 5 11 11 H 1.48497 * 109.47196 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47019 * 300.00161 * 9 7 5 13 13 N 1.46501 * 109.47254 * 64.99449 * 3 2 1 14 14 C 1.34773 * 120.00501 * 275.00426 * 13 3 2 15 15 O 1.21282 * 119.99868 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00247 * 180.02562 * 14 13 3 17 17 O 1.42904 * 109.47281 * 179.97438 * 16 14 13 18 18 C 1.35897 * 116.99870 * 179.97438 * 17 16 14 19 19 C 1.38738 * 120.05494 * 270.27287 * 18 17 16 20 20 C 1.50702 * 120.02558 * 0.02562 * 19 18 17 21 21 C 1.38141 * 119.94395 * 180.25974 * 19 18 17 22 22 C 1.38274 * 120.05552 * 359.44290 * 21 19 18 23 23 C 1.38261 * 120.10990 * 0.30244 * 22 21 19 24 24 C 1.38149 * 120.05703 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.02698 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47365 * 300.00511 * 1 2 3 28 28 H 1.09005 * 109.47403 * 60.00212 * 1 2 3 29 29 H 1.08999 * 109.47441 * 239.99747 * 2 1 3 30 30 H 1.08998 * 109.47077 * 119.99852 * 2 1 3 31 31 H 0.97002 * 119.99860 * 179.97438 * 8 7 5 32 32 H 0.97006 * 119.99610 * 95.00574 * 13 3 2 33 33 H 1.08998 * 109.47399 * 59.99776 * 16 14 13 34 34 H 1.08998 * 109.47138 * 300.00095 * 16 14 13 35 35 H 1.09000 * 109.47072 * 270.24905 * 20 19 18 36 36 H 1.08998 * 109.47473 * 30.25788 * 20 19 18 37 37 H 1.09000 * 109.46857 * 150.25773 * 20 19 18 38 38 H 1.08002 * 119.97550 * 179.72852 * 21 19 18 39 39 H 1.07998 * 119.94363 * 180.27764 * 22 21 19 40 40 H 1.07996 * 119.97484 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47189 * 89.99754 * 25 24 23 42 42 H 1.09006 * 109.46628 * 209.99786 * 25 24 23 43 43 H 1.09001 * 109.47332 * 329.99143 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5966 0.1451 -0.2343 11 1 6.3978 0.2166 -2.6503 12 1 6.5005 2.2798 -1.3808 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6327 0.4340 16 6 0.0367 3.3388 2.6543 17 8 -1.2885 3.8588 2.5294 18 6 -1.8034 4.5017 3.6103 19 6 -2.5076 3.7908 4.5713 20 6 -2.7019 2.3043 4.4179 21 6 -3.0346 4.4475 5.6664 22 6 -2.8508 5.8104 5.8111 23 6 -2.1449 6.5202 4.8575 24 6 -1.6208 5.8690 3.7576 25 6 -0.8510 6.6433 2.7189 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0606 -2.9502 32 1 2.2719 2.1232 1.9978 33 1 0.7281 4.1542 2.8665 34 1 0.0680 2.6148 3.4685 35 1 -3.6194 2.1134 3.8612 36 1 -1.8548 1.8808 3.8785 37 1 -2.7723 1.8435 5.4032 38 1 -3.5866 3.8954 6.4126 39 1 -3.2598 6.3212 6.6703 40 1 -2.0031 7.5846 4.9725 41 1 0.2058 6.6576 2.9856 42 1 -0.9738 6.1672 1.7460 43 1 -1.2283 7.6649 2.6736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183915265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:44 Heat of formation + Delta-G solvation = -64.211092 kcal Electronic energy + Delta-G solvation = -23373.852431 eV Core-core repulsion = 19997.912068 eV Total energy + Delta-G solvation = -3375.940363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.35951 -38.93961 -37.07905 -34.97180 -33.68889 -32.42565 -31.36326 -30.96558 -28.61172 -27.07170 -26.74242 -26.11322 -23.01253 -21.88823 -20.98780 -20.47599 -19.36595 -17.77440 -17.30836 -16.63239 -15.70112 -15.69599 -15.23743 -14.91949 -14.70530 -14.08749 -14.03601 -13.53257 -13.31248 -13.17090 -13.09018 -12.77065 -12.67918 -12.52158 -11.98841 -11.96732 -11.65343 -11.55378 -11.30182 -11.27036 -11.23532 -11.00571 -10.82691 -10.33569 -10.19377 -9.85573 -9.62704 -9.08463 -8.95932 -8.72054 -8.59964 -8.50834 -7.85492 -6.13520 -4.23371 1.06523 1.19167 3.16564 3.24469 3.30209 3.30958 3.33682 3.68480 4.28344 4.48243 4.67263 4.69629 4.81491 5.10898 5.17366 5.17739 5.25518 5.33510 5.38021 5.47536 5.49213 5.56871 5.61804 5.69208 5.71378 6.03231 6.18899 6.30466 6.33158 6.39706 6.46282 6.47868 6.64629 6.66555 7.03648 7.19188 7.35440 7.42053 7.52321 7.61987 7.73344 7.88842 8.16681 8.62220 8.76013 9.09757 9.43859 10.91733 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.003454 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.922554 B = 8103.449338 C = 8669.022896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.525 6.525 16 C 0.046 3.954 17 O -0.304 6.304 18 C 0.093 3.907 19 C -0.096 4.096 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.095 4.095 25 C -0.117 4.117 26 H 0.023 0.977 27 H 0.038 0.962 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.388 0.612 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.918 8.275 15.943 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.286 3.714 15 O -0.402 6.402 16 C -0.032 4.032 17 O -0.219 6.219 18 C 0.049 3.951 19 C -0.097 4.097 20 C -0.169 4.169 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.096 4.096 25 C -0.174 4.174 26 H 0.042 0.958 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.537 8.103 14.859 19.427 hybrid contribution 1.387 0.033 0.550 1.492 sum -8.150 8.136 15.409 19.237 Atomic orbital electron populations 1.21844 0.98275 0.98084 1.01300 1.21944 0.92649 0.99760 1.02318 1.18802 0.94187 0.89147 0.80696 0.93216 1.21186 0.90629 1.39251 1.06374 0.92106 1.24885 0.98619 0.94775 0.95360 1.69884 1.35249 1.37436 1.09299 0.86509 0.84813 0.78317 0.77463 1.20159 1.21123 1.20182 1.46408 1.14124 1.56307 1.18819 1.19852 0.83253 0.79990 0.88352 1.90711 1.51037 1.58564 1.39876 1.22567 0.83961 0.98500 0.98135 1.86130 1.29249 1.73158 1.33411 1.18464 0.98149 0.90064 0.88386 1.20287 0.98796 0.96890 0.93696 1.20728 1.03271 0.90760 1.02156 1.20911 1.00567 0.94550 0.97567 1.21117 0.99271 0.94264 0.99179 1.20922 0.98947 0.99841 0.93876 1.20291 0.99231 0.93618 0.96450 1.20761 0.99139 0.99322 0.98160 0.95812 0.94309 0.93107 0.88229 0.95011 0.92460 0.77977 0.90613 0.90682 0.90698 0.91154 0.91622 0.85792 0.85940 0.85789 0.91213 0.90263 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.52 37.15 0.32 -2.78 16 2 C -0.13 -3.09 5.45 -26.74 -0.15 -3.23 16 3 C 0.27 6.78 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.50 11.29 55.43 0.63 -23.87 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.28 5.02 -54.93 -0.28 -14.56 16 14 C 0.50 9.94 6.47 -10.99 -0.07 9.87 16 15 O -0.53 -12.59 13.64 -14.35 -0.20 -12.78 16 16 C 0.05 0.70 6.17 36.00 0.22 0.93 16 17 O -0.30 -5.02 7.86 -39.33 -0.31 -5.33 16 18 C 0.09 1.31 5.67 -39.21 -0.22 1.09 16 19 C -0.10 -1.19 5.89 -104.47 -0.62 -1.80 16 20 C -0.11 -1.27 9.79 36.01 0.35 -0.92 16 21 C -0.12 -1.20 9.70 -39.60 -0.38 -1.58 16 22 C -0.12 -1.13 10.04 -39.56 -0.40 -1.53 16 23 C -0.12 -1.20 9.70 -39.61 -0.38 -1.59 16 24 C -0.10 -1.18 5.89 -104.47 -0.62 -1.80 16 25 C -0.12 -1.34 9.79 36.01 0.35 -0.99 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.04 0.85 5.65 -51.92 -0.29 0.55 16 28 H 0.05 1.22 7.85 -51.93 -0.41 0.82 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 6.67 8.54 -40.82 -0.35 6.32 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.97 7.23 -51.93 -0.38 0.60 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.89 6.30 -51.93 -0.33 0.56 16 37 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.08 7.53 -51.93 -0.39 0.68 16 43 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -30.83 351.74 -8.63 -39.46 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.61 Total: 6.70 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -2.14 Total: -10.25 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.35 Total: -38.44 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.50 Total: -18.11 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.83 -8.63 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183915265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.750 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds