Wall clock time and date at job start Tue Mar 31 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47413 * 2 1 4 4 H 1.09003 * 109.47011 * 304.99823 * 3 2 1 5 5 C 1.50702 * 109.47536 * 184.99912 * 3 2 1 6 6 H 1.07996 * 120.00091 * 239.99642 * 5 3 2 7 7 C 1.37882 * 119.99692 * 59.99634 * 5 3 2 8 8 N 1.31513 * 120.00091 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99863 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46860 * 60.00033 * 9 7 5 11 11 H 1.48497 * 109.47196 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47019 * 300.00161 * 9 7 5 13 13 N 1.46501 * 109.47254 * 64.99449 * 3 2 1 14 14 C 1.34773 * 120.00501 * 275.00426 * 13 3 2 15 15 O 1.21282 * 119.99868 * 359.97438 * 14 13 3 16 16 C 1.50694 * 120.00247 * 180.02562 * 14 13 3 17 17 O 1.42904 * 109.47281 * 179.97438 * 16 14 13 18 18 C 1.35897 * 116.99870 * 179.97438 * 17 16 14 19 19 C 1.38738 * 120.05494 * 270.27287 * 18 17 16 20 20 C 1.50702 * 120.02558 * 0.02562 * 19 18 17 21 21 C 1.38141 * 119.94395 * 180.25974 * 19 18 17 22 22 C 1.38274 * 120.05552 * 359.44290 * 21 19 18 23 23 C 1.38261 * 120.10990 * 0.30244 * 22 21 19 24 24 C 1.38149 * 120.05703 * 359.97438 * 23 22 21 25 25 C 1.50701 * 120.02698 * 180.02562 * 24 23 22 26 26 H 1.09000 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47365 * 300.00511 * 1 2 3 28 28 H 1.09005 * 109.47403 * 60.00212 * 1 2 3 29 29 H 1.08999 * 109.47441 * 239.99747 * 2 1 3 30 30 H 1.08998 * 109.47077 * 119.99852 * 2 1 3 31 31 H 0.97002 * 119.99860 * 179.97438 * 8 7 5 32 32 H 0.97006 * 119.99610 * 95.00574 * 13 3 2 33 33 H 1.08998 * 109.47399 * 59.99776 * 16 14 13 34 34 H 1.08998 * 109.47138 * 300.00095 * 16 14 13 35 35 H 1.09000 * 109.47072 * 270.24905 * 20 19 18 36 36 H 1.08998 * 109.47473 * 30.25788 * 20 19 18 37 37 H 1.09000 * 109.46857 * 150.25773 * 20 19 18 38 38 H 1.08002 * 119.97550 * 179.72852 * 21 19 18 39 39 H 1.07998 * 119.94363 * 180.27764 * 22 21 19 40 40 H 1.07996 * 119.97484 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47189 * 89.99754 * 25 24 23 42 42 H 1.09006 * 109.46628 * 209.99786 * 25 24 23 43 43 H 1.09001 * 109.47332 * 329.99143 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8799 -1.3811 10 1 6.5966 0.1451 -0.2343 11 1 6.3978 0.2166 -2.6503 12 1 6.5005 2.2798 -1.3808 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3393 2.6327 0.4340 16 6 0.0367 3.3388 2.6543 17 8 -1.2885 3.8588 2.5294 18 6 -1.8034 4.5017 3.6103 19 6 -2.5076 3.7908 4.5713 20 6 -2.7019 2.3043 4.4179 21 6 -3.0346 4.4475 5.6664 22 6 -2.8508 5.8104 5.8111 23 6 -2.1449 6.5202 4.8575 24 6 -1.6208 5.8690 3.7576 25 6 -0.8510 6.6433 2.7189 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0606 -2.9502 32 1 2.2719 2.1232 1.9978 33 1 0.7281 4.1542 2.8665 34 1 0.0680 2.6148 3.4685 35 1 -3.6194 2.1134 3.8612 36 1 -1.8548 1.8808 3.8785 37 1 -2.7723 1.8435 5.4032 38 1 -3.5866 3.8954 6.4126 39 1 -3.2598 6.3212 6.6703 40 1 -2.0031 7.5846 4.9725 41 1 0.2058 6.6576 2.9856 42 1 -0.9738 6.1672 1.7460 43 1 -1.2283 7.6649 2.6736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183915265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:44 Heat of formation + Delta-G solvation = -81.815271 kcal Electronic energy + Delta-G solvation = -23374.615805 eV Core-core repulsion = 19997.912068 eV Total energy + Delta-G solvation = -3376.703737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40417 -40.46460 -38.19035 -36.83067 -34.53090 -34.33405 -32.98268 -32.08699 -30.02399 -28.62328 -27.54683 -27.38099 -24.94434 -22.81774 -22.18591 -21.83301 -21.19068 -19.09523 -18.77549 -17.67747 -17.46044 -17.16026 -16.50352 -16.36180 -16.07305 -15.52402 -14.94037 -14.86580 -14.65512 -14.56787 -14.08393 -13.87687 -13.83482 -13.68271 -13.59566 -13.40765 -13.16885 -12.91637 -12.86050 -12.65193 -12.46964 -12.27398 -12.19369 -12.10542 -12.06832 -11.59244 -11.07491 -10.90824 -10.67256 -10.50418 -9.67525 -9.53343 -9.48204 -8.15754 -6.33577 0.19577 0.37784 1.45652 1.47545 1.55260 1.74913 1.99307 2.42354 2.70758 3.13197 3.20462 3.81433 3.88979 3.90899 4.07625 4.11563 4.15800 4.39521 4.47082 4.48239 4.55613 4.56132 4.61829 4.71647 4.74960 4.75244 4.86458 4.92636 5.05110 5.17164 5.24763 5.32093 5.42682 5.52051 5.52677 5.54204 5.60158 5.62965 5.77618 5.84797 5.92850 6.15964 6.53543 6.73805 6.94889 7.33000 7.53943 8.89494 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.003454 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.922554 B = 8103.449338 C = 8669.022896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.700 5.700 14 C 0.500 3.500 15 O -0.573 6.573 16 C 0.059 3.941 17 O -0.330 6.330 18 C 0.059 3.941 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.114 4.114 26 H 0.046 0.954 27 H 0.042 0.958 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.149 0.851 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.602 9.263 19.254 23.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.588 4.588 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.196 1.196 13 N -0.351 5.351 14 C 0.286 3.714 15 O -0.453 6.453 16 C -0.018 4.018 17 O -0.247 6.247 18 C 0.016 3.984 19 C -0.111 4.111 20 C -0.168 4.168 21 C -0.135 4.135 22 C -0.131 4.131 23 C -0.136 4.136 24 C -0.111 4.111 25 C -0.171 4.171 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.168 0.832 39 H 0.174 0.826 40 H 0.167 0.833 41 H 0.095 0.905 42 H 0.066 0.934 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.213 9.104 18.222 22.356 hybrid contribution 1.191 -0.205 -0.433 1.284 sum -8.021 8.899 17.789 21.447 Atomic orbital electron populations 1.21679 0.97140 0.99145 1.00127 1.21790 0.93551 0.99139 1.01489 1.18385 0.93737 0.89129 0.81036 0.98514 1.21550 0.91246 1.39108 1.06848 0.90781 1.25785 1.03377 0.94342 0.94988 1.70048 1.37197 1.38266 1.09837 0.85414 0.78999 0.78457 0.77556 1.18790 1.21324 1.19648 1.46130 1.14966 1.56099 1.17945 1.20642 0.82246 0.79042 0.89484 1.90690 1.52322 1.60202 1.42061 1.22407 0.84639 0.99437 0.95348 1.86095 1.29482 1.73773 1.35347 1.18780 0.99909 0.90916 0.88785 1.20475 0.99141 0.97293 0.94186 1.20725 1.02126 0.90701 1.03227 1.21256 0.99947 0.95219 0.97112 1.21551 0.97862 0.94042 0.99636 1.21253 0.98150 1.01151 0.93016 1.20470 1.00002 0.93195 0.97475 1.20731 0.99832 1.00032 0.96491 0.93467 0.93904 0.95829 0.90913 0.93735 0.92584 0.75908 0.88357 0.88079 0.91311 0.92989 0.89103 0.83194 0.82619 0.83283 0.90458 0.93351 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.52 71.98 0.61 -5.09 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.81 16 3 C 0.28 14.38 2.24 44.24 0.10 14.48 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -28.78 8.73 25.60 0.22 -28.56 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.82 5.29 84.66 0.45 1.27 16 8 N -0.92 -52.40 11.29 21.45 0.24 -52.16 16 9 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 N -0.70 -28.64 5.02 -446.10 -2.24 -30.88 16 14 C 0.50 20.27 6.47 87.66 0.57 20.84 16 15 O -0.57 -28.89 13.64 16.00 0.22 -28.67 16 16 C 0.06 1.78 6.17 71.23 0.44 2.22 16 17 O -0.33 -11.12 7.86 -73.35 -0.58 -11.70 16 18 C 0.06 1.64 5.67 22.51 0.13 1.76 16 19 C -0.11 -2.56 5.89 -19.77 -0.12 -2.68 16 20 C -0.11 -2.41 9.79 71.24 0.70 -1.71 16 21 C -0.12 -2.02 9.70 22.26 0.22 -1.81 16 22 C -0.11 -1.70 10.04 22.28 0.22 -1.47 16 23 C -0.12 -2.06 9.70 22.25 0.22 -1.84 16 24 C -0.11 -2.61 5.89 -19.77 -0.12 -2.72 16 25 C -0.11 -2.55 9.79 71.24 0.70 -1.85 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.91 5.65 -2.38 -0.01 1.90 16 28 H 0.02 1.17 7.85 -2.38 -0.02 1.15 16 29 H 0.07 4.03 5.95 -2.39 -0.01 4.01 16 30 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 32 H 0.41 13.61 8.54 -92.70 -0.79 12.82 16 33 H 0.10 2.48 8.14 -2.39 -0.02 2.47 16 34 H 0.10 2.50 7.23 -2.39 -0.02 2.48 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.29 6.30 -2.39 -0.02 1.28 16 37 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.05 1.36 7.53 -2.38 -0.02 1.35 16 43 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 Total: -1.00 -70.24 351.74 4.39 -65.85 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.22 Total: 26.81 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 4.50 Total: -12.97 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -2.00 Total: -83.04 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -0.36 Total: -40.37 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -70.24 4.39 -65.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183915265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.963 kcal (2) G-P(sol) polarization free energy of solvation -70.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds