Wall clock time and date at job start Tue Mar 31 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47031 * 305.01039 * 3 2 1 5 5 C 1.50697 * 109.47138 * 185.00323 * 3 2 1 6 6 H 1.08000 * 119.99835 * 240.00038 * 5 3 2 7 7 C 1.37879 * 120.00075 * 60.00428 * 5 3 2 8 8 N 1.31509 * 119.99882 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99946 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47346 * 89.99887 * 9 7 5 11 11 H 1.48508 * 109.46911 * 209.99983 * 9 7 5 12 12 H 1.48501 * 109.47126 * 329.99491 * 9 7 5 13 13 N 1.46503 * 109.46609 * 65.00535 * 3 2 1 14 14 C 1.34780 * 120.00029 * 274.71814 * 13 3 2 15 15 O 1.21283 * 119.99619 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99952 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.47495 * 304.99914 * 16 14 13 18 18 C 1.52994 * 109.47417 * 65.00653 * 16 14 13 19 19 O 1.42908 * 109.47032 * 185.00423 * 16 14 13 20 20 C 1.35895 * 116.99898 * 155.32407 * 19 16 14 21 21 C 1.38755 * 120.05577 * 185.36007 * 20 19 16 22 22 C 1.38120 * 119.94675 * 180.02562 * 21 20 19 23 23 C 1.38285 * 120.05379 * 359.97438 * 22 21 20 24 24 C 1.38247 * 120.11451 * 0.04106 * 23 22 21 25 25 C 1.50695 * 119.97229 * 179.97438 * 24 23 22 26 26 C 1.38170 * 120.05165 * 359.68372 * 24 23 22 27 27 H 1.09006 * 109.46442 * 299.99283 * 1 2 3 28 28 H 1.08995 * 109.47227 * 59.99339 * 1 2 3 29 29 H 1.09000 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46270 * 240.00198 * 2 1 3 31 31 H 1.08995 * 109.47227 * 120.00661 * 2 1 3 32 32 H 0.96997 * 120.00270 * 180.02562 * 8 7 5 33 33 H 0.97000 * 120.00113 * 95.00231 * 13 3 2 34 34 H 1.09005 * 109.47050 * 59.99520 * 18 16 14 35 35 H 1.08993 * 109.47344 * 179.97438 * 18 16 14 36 36 H 1.09005 * 109.46626 * 300.00137 * 18 16 14 37 37 H 1.08003 * 120.02468 * 0.02575 * 21 20 19 38 38 H 1.08001 * 119.97081 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.94605 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47277 * 90.00248 * 25 24 23 41 41 H 1.09004 * 109.46922 * 210.00149 * 25 24 23 42 42 H 1.08998 * 109.47301 * 330.00089 * 25 24 23 43 43 H 1.07997 * 120.02666 * 180.29764 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8800 -1.3814 10 1 6.5538 -0.3521 -0.7602 11 1 6.3834 0.9215 -2.8168 12 1 6.5575 2.0719 -0.6891 13 7 1.6526 2.0973 1.2519 14 6 0.4374 2.6692 1.3653 15 8 -0.3355 2.6412 0.4310 16 6 0.0390 3.3433 2.6529 17 1 0.1508 2.6421 3.4799 18 6 0.9361 4.5596 2.8906 19 8 -1.3235 3.7658 2.5676 20 6 -1.9991 3.9099 3.7379 21 6 -3.3541 4.2087 3.7259 22 6 -4.0384 4.3553 4.9167 23 6 -3.3743 4.2040 6.1202 24 6 -2.0243 3.9067 6.1349 25 6 -1.3037 3.7431 7.4483 26 6 -1.3365 3.7534 4.9464 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8291 -0.0617 -2.9496 33 1 2.2721 2.1229 1.9979 34 1 0.8242 5.2608 2.0635 35 1 0.6477 5.0474 3.8216 36 1 1.9754 4.2373 2.9556 37 1 -3.8732 4.3265 2.7862 38 1 -5.0929 4.5882 4.9078 39 1 -3.9112 4.3186 7.0503 40 1 -1.3509 2.7001 7.7612 41 1 -0.2616 4.0403 7.3304 42 1 -1.7773 4.3707 8.2032 43 1 -0.2829 3.5164 4.9584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183921078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:07 Heat of formation + Delta-G solvation = -62.123035 kcal Electronic energy + Delta-G solvation = -23347.568258 eV Core-core repulsion = 19971.718440 eV Total energy + Delta-G solvation = -3375.849818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50414 -39.03040 -37.44501 -35.02378 -33.15358 -32.53936 -31.68833 -30.46172 -29.91691 -27.10479 -26.97760 -24.60165 -23.14930 -22.29501 -21.52788 -20.20150 -19.36087 -17.90598 -17.48315 -16.16942 -15.95705 -15.58650 -15.38175 -15.16215 -14.47654 -14.26798 -14.19493 -13.72713 -13.53194 -13.30117 -13.05467 -12.70998 -12.57043 -12.39543 -12.14001 -11.99167 -11.63569 -11.55296 -11.49555 -11.27425 -11.02735 -10.93273 -10.86204 -10.75514 -10.33729 -10.20745 -9.65493 -9.09939 -9.01052 -8.88628 -8.53337 -8.17798 -7.88881 -6.15215 -4.25132 1.22528 1.37358 2.96854 3.21990 3.25871 3.29691 3.31542 3.67316 4.12410 4.34509 4.59646 4.72517 4.78171 4.99434 5.04500 5.14214 5.15992 5.23678 5.27254 5.38695 5.45928 5.50440 5.60298 5.66411 5.71138 5.98309 6.08936 6.26312 6.34282 6.37853 6.44013 6.47085 6.64052 6.71095 7.01541 7.16720 7.32310 7.38451 7.42713 7.59276 7.69790 7.86415 8.14497 8.58115 8.73528 9.04785 9.42065 10.90101 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027078 B = 0.003406 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.793696 B = 8218.019897 C = 8680.547034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.525 6.525 16 C 0.063 3.937 17 H 0.091 0.909 18 C -0.173 4.173 19 O -0.282 6.282 20 C 0.141 3.859 21 C -0.158 4.158 22 C -0.077 4.077 23 C -0.166 4.166 24 C -0.049 4.049 25 C -0.116 4.116 26 C -0.215 4.215 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.024 0.976 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 6.566 17.147 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.289 3.711 15 O -0.401 6.401 16 C 0.003 3.997 17 H 0.109 0.891 18 C -0.231 4.231 19 O -0.194 6.194 20 C 0.095 3.905 21 C -0.177 4.177 22 C -0.096 4.096 23 C -0.185 4.185 24 C -0.049 4.049 25 C -0.172 4.172 26 C -0.234 4.234 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.220 0.780 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.992 6.466 16.039 19.491 hybrid contribution 1.437 -0.114 0.399 1.496 sum -7.555 6.352 16.438 19.174 Atomic orbital electron populations 1.21844 0.98323 0.98158 1.01230 1.21951 0.92610 0.99751 1.02379 1.18828 0.94274 0.89153 0.80652 0.93158 1.21207 0.90555 1.39241 1.06368 0.92037 1.24885 0.98641 0.94780 0.95345 1.69889 1.35172 1.37411 1.09352 0.86448 0.84797 0.78434 0.77421 1.20539 1.21058 1.19856 1.46414 1.14109 1.55873 1.18859 1.19791 0.83403 0.79789 0.88151 1.90711 1.51100 1.58690 1.39610 1.22381 0.81063 0.97370 0.98871 0.89140 1.22304 0.99746 0.97727 1.03326 1.86253 1.24174 1.81528 1.27425 1.19132 0.91898 0.94541 0.84925 1.20472 0.91539 1.06320 0.99364 1.20920 0.99559 0.97528 0.91545 1.20892 0.94102 1.05474 0.97991 1.19693 0.93912 0.96605 0.94658 1.20818 1.00165 1.02380 0.93880 1.21207 1.00916 1.09531 0.91739 0.94446 0.93073 0.95728 0.88156 0.94973 0.92498 0.77964 0.90680 0.91289 0.90041 0.85122 0.85497 0.86189 0.90963 0.91458 0.91437 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.16 0.32 -2.81 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.45 7.57 -51.93 -0.39 1.06 16 5 C -0.54 -13.80 8.73 -34.44 -0.30 -14.10 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.39 11.29 55.43 0.63 -23.77 16 9 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 13 N -0.70 -14.12 4.98 -54.93 -0.27 -14.39 16 14 C 0.51 10.09 5.75 -10.99 -0.06 10.03 16 15 O -0.52 -12.69 13.68 -14.30 -0.20 -12.89 16 16 C 0.06 0.97 2.64 -27.89 -0.07 0.90 16 17 H 0.09 1.18 6.31 -51.93 -0.33 0.86 16 18 C -0.17 -2.18 9.12 37.15 0.34 -1.84 16 19 O -0.28 -4.76 9.34 -39.27 -0.37 -5.13 16 20 C 0.14 2.02 6.60 -39.22 -0.26 1.76 16 21 C -0.16 -2.04 9.99 -39.43 -0.39 -2.43 16 22 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 23 C -0.17 -1.66 9.70 -39.56 -0.38 -2.04 16 24 C -0.05 -0.51 5.88 -104.65 -0.62 -1.12 16 25 C -0.12 -0.88 10.01 36.00 0.36 -0.52 16 26 C -0.22 -2.60 7.89 -39.43 -0.31 -2.91 16 27 H 0.04 0.83 5.67 -51.93 -0.29 0.53 16 28 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.39 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.74 6.90 -51.93 -0.36 0.38 16 36 H 0.08 0.91 7.92 -51.93 -0.41 0.49 16 37 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 42 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 43 H 0.13 1.39 5.43 -52.49 -0.29 1.11 16 LS Contribution 348.86 15.07 5.26 5.26 Total: -1.00 -30.87 348.86 -8.62 -39.49 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.47 Total: 7.49 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -2.18 Total: -11.30 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.35 Total: -38.16 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.56 Total: -18.01 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.87 -8.62 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183921078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.636 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds