Wall clock time and date at job start Tue Mar 31 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47258 * 2 1 4 4 H 1.08997 * 109.47031 * 305.01039 * 3 2 1 5 5 C 1.50697 * 109.47138 * 185.00323 * 3 2 1 6 6 H 1.08000 * 119.99835 * 240.00038 * 5 3 2 7 7 C 1.37879 * 120.00075 * 60.00428 * 5 3 2 8 8 N 1.31509 * 119.99882 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99946 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47346 * 89.99887 * 9 7 5 11 11 H 1.48508 * 109.46911 * 209.99983 * 9 7 5 12 12 H 1.48501 * 109.47126 * 329.99491 * 9 7 5 13 13 N 1.46503 * 109.46609 * 65.00535 * 3 2 1 14 14 C 1.34780 * 120.00029 * 274.71814 * 13 3 2 15 15 O 1.21283 * 119.99619 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99952 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.47495 * 304.99914 * 16 14 13 18 18 C 1.52994 * 109.47417 * 65.00653 * 16 14 13 19 19 O 1.42908 * 109.47032 * 185.00423 * 16 14 13 20 20 C 1.35895 * 116.99898 * 155.32407 * 19 16 14 21 21 C 1.38755 * 120.05577 * 185.36007 * 20 19 16 22 22 C 1.38120 * 119.94675 * 180.02562 * 21 20 19 23 23 C 1.38285 * 120.05379 * 359.97438 * 22 21 20 24 24 C 1.38247 * 120.11451 * 0.04106 * 23 22 21 25 25 C 1.50695 * 119.97229 * 179.97438 * 24 23 22 26 26 C 1.38170 * 120.05165 * 359.68372 * 24 23 22 27 27 H 1.09006 * 109.46442 * 299.99283 * 1 2 3 28 28 H 1.08995 * 109.47227 * 59.99339 * 1 2 3 29 29 H 1.09000 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46270 * 240.00198 * 2 1 3 31 31 H 1.08995 * 109.47227 * 120.00661 * 2 1 3 32 32 H 0.96997 * 120.00270 * 180.02562 * 8 7 5 33 33 H 0.97000 * 120.00113 * 95.00231 * 13 3 2 34 34 H 1.09005 * 109.47050 * 59.99520 * 18 16 14 35 35 H 1.08993 * 109.47344 * 179.97438 * 18 16 14 36 36 H 1.09005 * 109.46626 * 300.00137 * 18 16 14 37 37 H 1.08003 * 120.02468 * 0.02575 * 21 20 19 38 38 H 1.08001 * 119.97081 * 179.97438 * 22 21 20 39 39 H 1.07999 * 119.94605 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47277 * 90.00248 * 25 24 23 41 41 H 1.09004 * 109.46922 * 210.00149 * 25 24 23 42 42 H 1.08998 * 109.47301 * 330.00089 * 25 24 23 43 43 H 1.07997 * 120.02666 * 180.29764 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0049 0.8800 -1.3814 10 1 6.5538 -0.3521 -0.7602 11 1 6.3834 0.9215 -2.8168 12 1 6.5575 2.0719 -0.6891 13 7 1.6526 2.0973 1.2519 14 6 0.4374 2.6692 1.3653 15 8 -0.3355 2.6412 0.4310 16 6 0.0390 3.3433 2.6529 17 1 0.1508 2.6421 3.4799 18 6 0.9361 4.5596 2.8906 19 8 -1.3235 3.7658 2.5676 20 6 -1.9991 3.9099 3.7379 21 6 -3.3541 4.2087 3.7259 22 6 -4.0384 4.3553 4.9167 23 6 -3.3743 4.2040 6.1202 24 6 -2.0243 3.9067 6.1349 25 6 -1.3037 3.7431 7.4483 26 6 -1.3365 3.7534 4.9464 27 1 -0.3632 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 3.8291 -0.0617 -2.9496 33 1 2.2721 2.1229 1.9979 34 1 0.8242 5.2608 2.0635 35 1 0.6477 5.0474 3.8216 36 1 1.9754 4.2373 2.9556 37 1 -3.8732 4.3265 2.7862 38 1 -5.0929 4.5882 4.9078 39 1 -3.9112 4.3186 7.0503 40 1 -1.3509 2.7001 7.7612 41 1 -0.2616 4.0403 7.3304 42 1 -1.7773 4.3707 8.2032 43 1 -0.2829 3.5164 4.9584 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183921078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:06 Heat of formation + Delta-G solvation = -79.984335 kcal Electronic energy + Delta-G solvation = -23348.342782 eV Core-core repulsion = 19971.718440 eV Total energy + Delta-G solvation = -3376.624342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.65792 -40.44202 -38.55944 -36.88690 -34.55096 -33.88030 -33.16792 -31.95298 -30.84891 -28.95128 -27.76610 -25.91696 -24.88548 -23.45451 -22.42356 -21.84270 -21.10774 -19.10682 -18.95065 -17.65900 -17.30477 -16.93290 -16.67763 -16.54179 -16.03066 -15.71883 -15.25671 -14.99616 -14.60068 -14.47413 -14.23553 -13.98657 -13.88176 -13.62600 -13.34004 -13.23152 -13.14350 -12.93465 -12.90301 -12.67994 -12.62301 -12.32017 -12.17634 -12.09673 -11.89738 -11.72873 -11.60567 -11.07120 -10.66193 -10.51022 -9.74721 -9.70491 -9.12295 -8.15965 -6.33690 0.38225 0.48616 1.45797 1.46577 1.56697 1.69143 1.75913 2.40992 2.79920 2.81360 3.13837 3.61248 3.80583 3.86771 3.91404 3.99137 4.19555 4.38069 4.44905 4.45771 4.53068 4.58735 4.62936 4.72775 4.75297 4.83450 4.87811 4.95853 5.03188 5.08262 5.22346 5.30726 5.37984 5.40301 5.51363 5.51810 5.59453 5.66676 5.76056 5.86086 5.93023 6.14690 6.42779 6.73547 6.90764 7.32112 7.50269 8.89564 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027078 B = 0.003406 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.793696 B = 8218.019897 C = 8680.547034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.263 1.263 13 N -0.695 5.695 14 C 0.501 3.499 15 O -0.575 6.575 16 C 0.074 3.926 17 H 0.118 0.882 18 C -0.166 4.166 19 O -0.315 6.315 20 C 0.110 3.890 21 C -0.182 4.182 22 C -0.076 4.076 23 C -0.164 4.164 24 C -0.052 4.052 25 C -0.115 4.115 26 C -0.221 4.221 27 H 0.039 0.961 28 H 0.023 0.977 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.615 6.920 20.751 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.094 0.906 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.187 1.187 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.455 6.455 16 C 0.015 3.985 17 H 0.136 0.864 18 C -0.224 4.224 19 O -0.229 6.229 20 C 0.065 3.935 21 C -0.201 4.201 22 C -0.094 4.094 23 C -0.182 4.182 24 C -0.052 4.052 25 C -0.171 4.171 26 C -0.240 4.240 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.139 0.861 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.197 6.835 19.702 22.407 hybrid contribution 1.069 -0.193 -0.670 1.276 sum -7.128 6.642 19.031 21.380 Atomic orbital electron populations 1.21684 0.97342 0.99165 0.99987 1.21803 0.93372 0.99235 1.01609 1.18408 0.93879 0.89066 0.81017 0.98486 1.21564 0.91088 1.39017 1.06818 0.90577 1.25786 1.03362 0.94381 0.94999 1.70051 1.37136 1.38297 1.09921 0.85353 0.79018 0.78947 0.77061 1.19639 1.21533 1.18700 1.46114 1.14880 1.55554 1.17985 1.20657 0.82456 0.78871 0.89403 1.90687 1.52463 1.60377 1.41933 1.22280 0.81431 0.98674 0.96163 0.86431 1.22299 1.00107 0.96206 1.03748 1.86193 1.24813 1.82343 1.29529 1.19417 0.92431 0.96730 0.84876 1.20668 0.91584 1.07613 1.00218 1.21249 1.00786 0.96464 0.90865 1.21318 0.94191 1.03843 0.98854 1.20115 0.94374 0.95361 0.95362 1.20887 1.00413 1.03301 0.92520 1.21386 1.01608 1.09523 0.91440 0.94221 0.95767 0.93419 0.90798 0.93623 0.92612 0.75792 0.92550 0.88809 0.88234 0.86052 0.82931 0.83271 0.90119 0.90731 0.89777 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.52 71.98 0.61 -5.17 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.21 2.24 44.24 0.10 14.31 16 4 H 0.00 -0.17 7.57 -2.39 -0.02 -0.19 16 5 C -0.55 -28.25 8.73 25.60 0.22 -28.03 16 6 H 0.08 3.62 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.79 5.29 84.66 0.45 1.23 16 8 N -0.92 -52.13 11.29 21.45 0.24 -51.89 16 9 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 10 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 12 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 13 N -0.69 -28.00 4.98 -446.10 -2.22 -30.22 16 14 C 0.50 20.37 5.75 87.66 0.50 20.88 16 15 O -0.57 -29.27 13.68 15.95 0.22 -29.05 16 16 C 0.07 2.23 2.64 29.85 0.08 2.31 16 17 H 0.12 2.85 6.31 -2.39 -0.02 2.84 16 18 C -0.17 -3.93 9.12 71.98 0.66 -3.28 16 19 O -0.32 -10.87 9.34 -73.38 -0.69 -11.55 16 20 C 0.11 3.12 6.60 22.51 0.15 3.27 16 21 C -0.18 -4.69 9.99 22.37 0.22 -4.47 16 22 C -0.08 -1.45 10.04 22.25 0.22 -1.22 16 23 C -0.16 -2.75 9.70 22.28 0.22 -2.54 16 24 C -0.05 -0.93 5.88 -19.88 -0.12 -1.05 16 25 C -0.11 -1.30 10.01 71.23 0.71 -0.59 16 26 C -0.22 -4.90 7.89 22.37 0.18 -4.73 16 27 H 0.04 1.79 5.67 -2.38 -0.01 1.78 16 28 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 4.07 5.95 -2.38 -0.01 4.06 16 31 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.41 13.24 8.31 -92.71 -0.77 12.47 16 34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.09 1.77 6.90 -2.39 -0.02 1.75 16 36 H 0.10 1.97 7.92 -2.38 -0.02 1.95 16 37 H 0.12 3.18 8.06 -2.91 -0.02 3.16 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.75 8.09 -2.38 -0.02 0.73 16 42 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 43 H 0.14 2.64 5.43 -2.91 -0.02 2.63 16 Total: -1.00 -70.43 348.86 4.19 -66.24 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.24 Total: 27.99 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.37 Total: -14.88 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -1.98 Total: -82.11 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.47 Total: -40.60 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -70.43 4.19 -66.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183921078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.747 kcal (2) G-P(sol) polarization free energy of solvation -70.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds