Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46815 * 2 1 4 4 H 1.08993 * 109.47497 * 54.99785 * 3 2 1 5 5 C 1.50702 * 109.46986 * 175.00323 * 3 2 1 6 6 H 1.07998 * 120.00178 * 119.99785 * 5 3 2 7 7 C 1.37877 * 119.99793 * 299.71752 * 5 3 2 8 8 N 1.31517 * 119.99757 * 0.27838 * 7 5 3 9 9 Si 1.86798 * 120.00216 * 180.27768 * 7 5 3 10 10 H 1.48499 * 109.47143 * 90.00386 * 9 7 5 11 11 H 1.48505 * 109.47344 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.47093 * 330.00315 * 9 7 5 13 13 N 1.46503 * 109.47227 * 294.99503 * 3 2 1 14 14 C 1.34780 * 119.99814 * 84.99646 * 13 3 2 15 15 O 1.21281 * 119.99781 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99948 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.46883 * 60.00824 * 16 14 13 18 18 C 1.52996 * 109.47383 * 300.00395 * 16 14 13 19 19 O 1.42908 * 109.46698 * 180.02562 * 16 14 13 20 20 C 1.35899 * 116.99554 * 204.94073 * 19 16 14 21 21 C 1.38754 * 120.06017 * 354.54877 * 20 19 16 22 22 C 1.38115 * 119.94250 * 179.97438 * 21 20 19 23 23 C 1.38288 * 120.06249 * 359.97438 * 22 21 20 24 24 C 1.38246 * 120.10768 * 0.04211 * 23 22 21 25 25 C 1.50696 * 119.97165 * 179.97438 * 24 23 22 26 26 C 1.38163 * 120.05328 * 359.68100 * 24 23 22 27 27 H 1.09005 * 109.47280 * 60.00528 * 1 2 3 28 28 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47350 * 299.99871 * 1 2 3 30 30 H 1.09001 * 109.47350 * 240.00129 * 2 1 3 31 31 H 1.09005 * 109.47280 * 119.99471 * 2 1 3 32 32 H 0.97010 * 119.99946 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00396 * 265.00829 * 13 3 2 34 34 H 1.09003 * 109.47131 * 179.97438 * 18 16 14 35 35 H 1.09001 * 109.46956 * 300.00205 * 18 16 14 36 36 H 1.09001 * 109.46915 * 59.99690 * 18 16 14 37 37 H 1.07997 * 120.02153 * 0.02562 * 21 20 19 38 38 H 1.08007 * 119.97244 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.94904 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.47354 * 89.99870 * 25 24 23 41 41 H 1.09004 * 109.47231 * 210.00001 * 25 24 23 42 42 H 1.09004 * 109.47213 * 329.99933 * 25 24 23 43 43 H 1.08005 * 120.02812 * 180.29269 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1430 0.8837 1.2306 8 7 3.4059 0.3424 2.1758 9 14 6.0043 0.8928 1.3878 10 1 6.4358 2.1291 2.0882 11 1 6.4413 -0.2946 2.1653 12 1 6.6155 0.8512 0.0351 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3671 15 8 -0.3394 2.6325 -0.4343 16 6 0.0362 3.3375 -2.6550 17 1 0.0672 2.6128 -3.4686 18 6 1.0065 4.4820 -2.9541 19 8 -1.2891 3.8576 -2.5301 20 6 -1.9990 4.0193 -3.6775 21 6 -1.3954 3.7924 -4.9061 22 6 -2.1193 3.9570 -6.0708 23 6 -3.4448 4.3471 -6.0132 24 6 -4.0484 4.5742 -4.7904 25 6 -5.4928 4.9997 -4.7313 26 6 -3.3302 4.4053 -3.6223 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.8288 -0.0525 2.9544 33 1 2.2718 2.1231 -1.9979 34 1 0.7183 4.9686 -3.8859 35 1 0.9755 5.2067 -2.1405 36 1 2.0175 4.0856 -3.0492 37 1 -0.3606 3.4865 -4.9515 38 1 -1.6499 3.7809 -7.0274 39 1 -4.0093 4.4749 -6.9250 40 1 -6.1298 4.1169 -4.6766 41 1 -5.6534 5.6189 -3.8487 42 1 -5.7401 5.5713 -5.6259 43 1 -3.8036 4.5783 -2.6670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183921097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = -61.922862 kcal Electronic energy + Delta-G solvation = -23247.950755 eV Core-core repulsion = 19872.109618 eV Total energy + Delta-G solvation = -3375.841137 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.48935 -39.04061 -37.47987 -35.01968 -32.86346 -32.62424 -31.91680 -30.63036 -29.67767 -27.12676 -26.93391 -24.56742 -23.03608 -22.56788 -21.55704 -20.00782 -19.34041 -18.04067 -17.40891 -16.15890 -16.00083 -15.61109 -15.29042 -15.14894 -14.46442 -14.43389 -14.11650 -13.73803 -13.50516 -13.40322 -12.93708 -12.70813 -12.47673 -12.41602 -12.14456 -11.97853 -11.63786 -11.58385 -11.50911 -11.27820 -11.00341 -10.93252 -10.86490 -10.76838 -10.33775 -10.21207 -9.64700 -9.09987 -8.98532 -8.88673 -8.52931 -8.19199 -7.88599 -6.15181 -4.25009 1.21532 1.38343 2.95566 3.22471 3.27162 3.29739 3.31178 3.67045 4.11492 4.34473 4.66379 4.73405 4.80113 4.99707 5.03094 5.08982 5.16173 5.20796 5.29630 5.37996 5.41526 5.54717 5.60461 5.67726 5.79084 5.97363 6.09148 6.26959 6.33490 6.37661 6.43843 6.47592 6.63959 6.69910 7.01345 7.16716 7.32251 7.38641 7.42892 7.59340 7.69859 7.86413 8.14398 8.58306 8.73665 9.04934 9.42183 10.90180 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.003227 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.450005 B = 8673.886805 C = 9100.538579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.525 6.525 16 C 0.063 3.937 17 H 0.092 0.908 18 C -0.174 4.174 19 O -0.282 6.282 20 C 0.142 3.858 21 C -0.220 4.220 22 C -0.077 4.077 23 C -0.166 4.166 24 C -0.049 4.049 25 C -0.114 4.114 26 C -0.154 4.154 27 H 0.037 0.963 28 H 0.024 0.976 29 H 0.050 0.950 30 H 0.032 0.968 31 H 0.100 0.900 32 H 0.265 0.735 33 H 0.388 0.612 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 7.061 -16.125 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.288 3.712 15 O -0.401 6.401 16 C 0.003 3.997 17 H 0.110 0.890 18 C -0.232 4.232 19 O -0.194 6.194 20 C 0.095 3.905 21 C -0.238 4.238 22 C -0.095 4.095 23 C -0.184 4.184 24 C -0.050 4.050 25 C -0.171 4.171 26 C -0.173 4.173 27 H 0.056 0.944 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.050 0.950 31 H 0.118 0.882 32 H 0.075 0.925 33 H 0.221 0.779 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.578 6.965 -15.016 19.644 hybrid contribution 1.538 -0.141 -0.458 1.611 sum -9.040 6.825 -15.474 19.177 Atomic orbital electron populations 1.21848 0.98322 0.98144 1.01237 1.21949 0.92606 0.99754 1.02367 1.18830 0.94279 0.89150 0.80652 0.93174 1.21203 0.90553 1.39331 1.06234 0.92039 1.24888 0.98640 0.94769 0.95369 1.69898 1.35180 1.37547 1.09220 0.86448 0.84771 0.77679 0.78194 1.20559 1.21056 1.19851 1.46420 1.13928 1.56079 1.18830 1.19798 0.83394 0.79832 0.88136 1.90712 1.51077 1.58643 1.39699 1.22388 0.81843 0.96714 0.98750 0.89015 1.22318 0.99104 0.98593 1.03142 1.86245 1.26260 1.78489 1.28413 1.19115 0.91489 0.94548 0.85310 1.21326 1.01383 1.08914 0.92214 1.20898 0.94053 0.96943 0.97571 1.20888 0.95390 1.05015 0.97128 1.19689 0.95988 0.96958 0.92326 1.20803 0.91903 1.01522 1.02847 1.20330 0.91622 1.06280 0.99041 0.94441 0.95738 0.93075 0.94958 0.88184 0.92503 0.77940 0.91278 0.90677 0.90050 0.85239 0.85908 0.86181 0.90920 0.91299 0.91426 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.15 0.32 -2.81 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -13.79 8.73 -34.44 -0.30 -14.09 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 8 N -0.88 -24.42 11.30 55.43 0.63 -23.80 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 N -0.70 -14.12 4.91 -54.93 -0.27 -14.39 16 14 C 0.51 10.09 5.80 -10.99 -0.06 10.02 16 15 O -0.52 -12.70 13.64 -14.35 -0.20 -12.89 16 16 C 0.06 0.97 2.64 -27.89 -0.07 0.89 16 17 H 0.09 1.20 6.31 -51.93 -0.33 0.87 16 18 C -0.17 -2.17 9.07 37.16 0.34 -1.84 16 19 O -0.28 -4.77 9.33 -39.33 -0.37 -5.13 16 20 C 0.14 2.03 6.60 -39.21 -0.26 1.77 16 21 C -0.22 -2.63 8.24 -39.44 -0.33 -2.96 16 22 C -0.08 -0.79 10.04 -39.61 -0.40 -1.18 16 23 C -0.17 -1.66 9.70 -39.56 -0.38 -2.04 16 24 C -0.05 -0.53 5.88 -104.65 -0.62 -1.15 16 25 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 26 C -0.15 -2.02 9.64 -39.43 -0.38 -2.40 16 27 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.67 5.96 -51.93 -0.31 2.36 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.39 6.59 7.96 -40.82 -0.32 6.27 16 34 H 0.07 0.73 6.91 -51.93 -0.36 0.37 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.89 7.56 -51.93 -0.39 0.50 16 37 H 0.13 1.36 5.43 -52.49 -0.28 1.07 16 38 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 42 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 43 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -30.89 348.06 -8.59 -39.48 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.43 Total: 7.52 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -2.18 Total: -11.30 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.36 Total: -38.19 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.56 Total: -18.03 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.89 -8.59 -39.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183921097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.441 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds