Wall clock time and date at job start Tue Mar 31 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46815 * 2 1 4 4 H 1.08993 * 109.47497 * 54.99785 * 3 2 1 5 5 C 1.50702 * 109.46986 * 175.00323 * 3 2 1 6 6 H 1.07998 * 120.00178 * 119.99785 * 5 3 2 7 7 C 1.37877 * 119.99793 * 299.71752 * 5 3 2 8 8 N 1.31517 * 119.99757 * 0.27838 * 7 5 3 9 9 Si 1.86798 * 120.00216 * 180.27768 * 7 5 3 10 10 H 1.48499 * 109.47143 * 90.00386 * 9 7 5 11 11 H 1.48505 * 109.47344 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.47093 * 330.00315 * 9 7 5 13 13 N 1.46503 * 109.47227 * 294.99503 * 3 2 1 14 14 C 1.34780 * 119.99814 * 84.99646 * 13 3 2 15 15 O 1.21281 * 119.99781 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99948 * 180.02562 * 14 13 3 17 17 H 1.09000 * 109.46883 * 60.00824 * 16 14 13 18 18 C 1.52996 * 109.47383 * 300.00395 * 16 14 13 19 19 O 1.42908 * 109.46698 * 180.02562 * 16 14 13 20 20 C 1.35899 * 116.99554 * 204.94073 * 19 16 14 21 21 C 1.38754 * 120.06017 * 354.54877 * 20 19 16 22 22 C 1.38115 * 119.94250 * 179.97438 * 21 20 19 23 23 C 1.38288 * 120.06249 * 359.97438 * 22 21 20 24 24 C 1.38246 * 120.10768 * 0.04211 * 23 22 21 25 25 C 1.50696 * 119.97165 * 179.97438 * 24 23 22 26 26 C 1.38163 * 120.05328 * 359.68100 * 24 23 22 27 27 H 1.09005 * 109.47280 * 60.00528 * 1 2 3 28 28 H 1.09003 * 109.46903 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47350 * 299.99871 * 1 2 3 30 30 H 1.09001 * 109.47350 * 240.00129 * 2 1 3 31 31 H 1.09005 * 109.47280 * 119.99471 * 2 1 3 32 32 H 0.97010 * 119.99946 * 179.97438 * 8 7 5 33 33 H 0.97000 * 120.00396 * 265.00829 * 13 3 2 34 34 H 1.09003 * 109.47131 * 179.97438 * 18 16 14 35 35 H 1.09001 * 109.46956 * 300.00205 * 18 16 14 36 36 H 1.09001 * 109.46915 * 59.99690 * 18 16 14 37 37 H 1.07997 * 120.02153 * 0.02562 * 21 20 19 38 38 H 1.08007 * 119.97244 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.94904 * 180.02562 * 23 22 21 40 40 H 1.09000 * 109.47354 * 89.99870 * 25 24 23 41 41 H 1.09004 * 109.47231 * 210.00001 * 25 24 23 42 42 H 1.09004 * 109.47213 * 329.99933 * 25 24 23 43 43 H 1.08005 * 120.02812 * 180.29269 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6524 7 6 4.1430 0.8837 1.2306 8 7 3.4059 0.3424 2.1758 9 14 6.0043 0.8928 1.3878 10 1 6.4358 2.1291 2.0882 11 1 6.4413 -0.2946 2.1653 12 1 6.6155 0.8512 0.0351 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3671 15 8 -0.3394 2.6325 -0.4343 16 6 0.0362 3.3375 -2.6550 17 1 0.0672 2.6128 -3.4686 18 6 1.0065 4.4820 -2.9541 19 8 -1.2891 3.8576 -2.5301 20 6 -1.9990 4.0193 -3.6775 21 6 -1.3954 3.7924 -4.9061 22 6 -2.1193 3.9570 -6.0708 23 6 -3.4448 4.3471 -6.0132 24 6 -4.0484 4.5742 -4.7904 25 6 -5.4928 4.9997 -4.7313 26 6 -3.3302 4.4053 -3.6223 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.8288 -0.0525 2.9544 33 1 2.2718 2.1231 -1.9979 34 1 0.7183 4.9686 -3.8859 35 1 0.9755 5.2067 -2.1405 36 1 2.0175 4.0856 -3.0492 37 1 -0.3606 3.4865 -4.9515 38 1 -1.6499 3.7809 -7.0274 39 1 -4.0093 4.4749 -6.9250 40 1 -6.1298 4.1169 -4.6766 41 1 -5.6534 5.6189 -3.8487 42 1 -5.7401 5.5713 -5.6259 43 1 -3.8036 4.5783 -2.6670 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183921097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:11 Heat of formation + Delta-G solvation = -79.806167 kcal Electronic energy + Delta-G solvation = -23248.726233 eV Core-core repulsion = 19872.109618 eV Total energy + Delta-G solvation = -3376.616616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.64701 -40.44281 -38.59802 -36.88453 -34.53470 -33.55972 -33.40380 -32.19356 -30.67679 -28.93734 -27.77790 -25.90170 -24.84640 -23.43297 -22.82017 -21.57957 -21.00724 -19.21606 -18.88051 -17.65967 -17.31305 -16.93380 -16.63897 -16.57574 -16.02323 -15.71012 -15.20351 -15.09905 -14.60409 -14.49708 -14.32650 -13.90094 -13.88259 -13.62609 -13.29743 -13.20305 -13.15680 -12.90216 -12.86861 -12.70301 -12.64468 -12.38188 -12.17383 -12.09175 -11.91032 -11.72346 -11.59571 -11.07676 -10.65574 -10.50853 -9.73258 -9.70176 -9.13538 -8.16139 -6.33734 0.37329 0.49416 1.45778 1.46057 1.56500 1.67363 1.78558 2.40711 2.79379 2.81246 3.13766 3.62737 3.81181 3.90920 3.94534 3.96261 4.19952 4.34191 4.44788 4.45832 4.53207 4.53963 4.65566 4.66663 4.73183 4.83953 4.89157 5.01974 5.03202 5.09638 5.22461 5.25747 5.39227 5.40415 5.50833 5.51995 5.59447 5.66254 5.76149 5.85673 5.92475 6.14624 6.43265 6.73595 6.91005 7.32132 7.50516 8.89459 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032271 B = 0.003227 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.450005 B = 8673.886805 C = 9100.538579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.258 1.258 13 N -0.694 5.694 14 C 0.500 3.500 15 O -0.575 6.575 16 C 0.074 3.926 17 H 0.120 0.880 18 C -0.167 4.167 19 O -0.316 6.316 20 C 0.111 3.889 21 C -0.224 4.224 22 C -0.075 4.075 23 C -0.163 4.163 24 C -0.053 4.053 25 C -0.114 4.114 26 C -0.179 4.179 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.023 0.977 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.265 0.735 33 H 0.407 0.593 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.100 0.900 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.322 7.385 -19.800 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.181 1.181 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.455 6.455 16 C 0.014 3.986 17 H 0.138 0.862 18 C -0.224 4.224 19 O -0.230 6.230 20 C 0.066 3.934 21 C -0.243 4.243 22 C -0.093 4.093 23 C -0.181 4.181 24 C -0.053 4.053 25 C -0.170 4.170 26 C -0.198 4.198 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.113 0.887 35 H 0.074 0.926 36 H 0.118 0.882 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.168 0.832 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.902 7.305 -18.747 22.425 hybrid contribution 1.204 -0.205 0.644 1.381 sum -8.697 7.100 -18.104 21.303 Atomic orbital electron populations 1.21687 0.97332 0.99158 0.99999 1.21800 0.93376 0.99210 1.01606 1.18410 0.93881 0.89079 0.81016 0.98555 1.21560 0.91086 1.39055 1.06679 0.90566 1.25789 1.03354 0.94386 0.95039 1.70060 1.37145 1.38449 1.09794 0.85359 0.79040 0.77307 0.78711 1.20584 1.21143 1.18139 1.46117 1.14704 1.55757 1.17950 1.20678 0.82445 0.78915 0.89406 1.90688 1.52456 1.60329 1.42048 1.22297 0.82290 0.98008 0.95979 0.86245 1.22315 0.99281 0.97244 1.03577 1.86185 1.26987 1.79262 1.30535 1.19400 0.91906 0.96687 0.85442 1.21534 1.02253 1.08762 0.91740 1.21320 0.94150 0.95580 0.98246 1.21319 0.95637 1.03421 0.97762 1.20045 0.97205 0.96173 0.91905 1.20868 0.90167 1.02087 1.03884 1.20510 0.91899 1.07701 0.99700 0.94167 0.93417 0.95815 0.93557 0.90859 0.92618 0.75761 0.88733 0.92560 0.88178 0.83752 0.82741 0.83205 0.90143 0.91406 0.89336 0.86389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.51 71.98 0.61 -5.16 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.79 16 3 C 0.28 14.21 2.24 44.25 0.10 14.31 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -28.20 8.73 25.60 0.22 -27.97 16 6 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.01 0.76 5.30 84.65 0.45 1.21 16 8 N -0.92 -52.25 11.30 21.45 0.24 -52.00 16 9 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 12 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 13 N -0.69 -27.97 4.91 -446.08 -2.19 -30.16 16 14 C 0.50 20.34 5.80 87.66 0.51 20.85 16 15 O -0.58 -29.33 13.64 16.00 0.22 -29.11 16 16 C 0.07 2.21 2.64 29.85 0.08 2.29 16 17 H 0.12 2.87 6.31 -2.39 -0.02 2.85 16 18 C -0.17 -3.89 9.07 71.98 0.65 -3.24 16 19 O -0.32 -10.91 9.33 -73.38 -0.68 -11.60 16 20 C 0.11 3.13 6.60 22.51 0.15 3.28 16 21 C -0.22 -4.85 8.24 22.36 0.18 -4.66 16 22 C -0.08 -1.28 10.04 22.25 0.22 -1.05 16 23 C -0.16 -2.73 9.70 22.28 0.22 -2.52 16 24 C -0.05 -1.06 5.88 -19.88 -0.12 -1.18 16 25 C -0.11 -1.56 10.01 71.23 0.71 -0.85 16 26 C -0.18 -4.75 9.64 22.37 0.22 -4.53 16 27 H 0.04 1.81 5.65 -2.38 -0.01 1.80 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.02 1.18 7.85 -2.39 -0.02 1.17 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 4.04 5.96 -2.38 -0.01 4.03 16 32 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 33 H 0.41 13.22 7.96 -92.71 -0.74 12.48 16 34 H 0.09 1.74 6.91 -2.39 -0.02 1.73 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.10 1.93 7.56 -2.39 -0.02 1.91 16 37 H 0.14 2.55 5.43 -2.91 -0.02 2.53 16 38 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 42 H 0.09 0.85 8.09 -2.39 -0.02 0.83 16 43 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -70.81 348.06 4.26 -66.55 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.27 Total: 27.91 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.37 Total: -15.02 kcal Atomic # 7 Polarization: -80.22 SS G_CDS: -1.95 Total: -82.17 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.47 Total: -40.70 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -70.81 4.26 -66.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183921097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.256 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds