Wall clock time and date at job start Tue Mar 31 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 H 1.09003 * 109.46612 * 304.99830 * 3 2 1 5 5 C 1.50699 * 109.47132 * 185.00052 * 3 2 1 6 6 H 1.08002 * 120.00001 * 239.99649 * 5 3 2 7 7 C 1.37874 * 120.00505 * 59.99857 * 5 3 2 8 8 N 1.31521 * 119.99709 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00360 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47323 * 119.99987 * 9 7 5 12 12 H 1.48498 * 109.47381 * 239.99850 * 9 7 5 13 13 N 1.46500 * 109.47312 * 64.99606 * 3 2 1 14 14 C 1.34772 * 119.99978 * 275.00242 * 13 3 2 15 15 O 1.21281 * 120.00222 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99740 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47569 * 60.00214 * 16 14 13 18 18 C 1.52998 * 109.47250 * 299.99894 * 16 14 13 19 19 O 1.42903 * 109.47222 * 180.02562 * 16 14 13 20 20 C 1.35900 * 117.00422 * 204.68777 * 19 16 14 21 21 C 1.38748 * 120.06003 * 174.63496 * 20 19 16 22 22 C 1.38121 * 119.94817 * 180.02562 * 21 20 19 23 23 C 1.38289 * 120.05232 * 0.02562 * 22 21 20 24 24 C 1.38250 * 120.11544 * 359.95388 * 23 22 21 25 25 C 1.50695 * 119.97408 * 179.97438 * 24 23 22 26 26 C 1.38166 * 120.04955 * 0.27924 * 24 23 22 27 27 H 1.09000 * 109.47322 * 60.00573 * 1 2 3 28 28 H 1.09006 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47396 * 300.00216 * 1 2 3 30 30 H 1.08999 * 109.47396 * 239.99784 * 2 1 3 31 31 H 1.09005 * 109.46869 * 119.99979 * 2 1 3 32 32 H 0.96999 * 120.00014 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99674 * 94.99931 * 13 3 2 34 34 H 1.09002 * 109.47041 * 60.00152 * 18 16 14 35 35 H 1.09004 * 109.47559 * 180.02562 * 18 16 14 36 36 H 1.09007 * 109.47241 * 299.99947 * 18 16 14 37 37 H 1.07998 * 120.02842 * 0.02562 * 21 20 19 38 38 H 1.07997 * 119.97701 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.94608 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.46762 * 90.00175 * 25 24 23 41 41 H 1.08999 * 109.47154 * 209.99707 * 25 24 23 42 42 H 1.08999 * 109.47155 * 330.00222 * 25 24 23 43 43 H 1.08000 * 120.02398 * 179.74161 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8800 -1.3810 10 1 6.5987 1.5452 -0.1936 11 1 6.4961 -0.5191 -1.4625 12 1 6.4000 1.6155 -2.6090 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3396 2.6319 0.4343 16 6 0.0362 3.3377 2.6547 17 1 0.7275 4.1531 2.8678 18 6 0.0797 2.3206 3.7967 19 8 -1.2893 3.8569 2.5301 20 6 -1.6223 4.8987 3.3367 21 6 -2.8525 5.5240 3.1922 22 6 -3.1883 6.5830 4.0129 23 6 -2.2994 7.0205 4.9777 24 6 -1.0732 6.3989 5.1240 25 6 -0.1067 6.8786 6.1760 26 6 -0.7307 5.3423 4.3023 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8293 -0.0613 -2.9498 33 1 2.2719 2.1232 1.9978 34 1 1.0906 1.9242 3.8919 35 1 -0.2093 2.8074 4.7282 36 1 -0.6118 1.5052 3.5837 37 1 -3.5469 5.1830 2.4386 38 1 -4.1455 7.0703 3.9005 39 1 -2.5636 7.8489 5.6182 40 1 -0.2861 6.3402 7.1067 41 1 0.9145 6.6959 5.8416 42 1 -0.2496 7.9466 6.3407 43 1 0.2290 4.8597 4.4142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183921108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:14 Heat of formation + Delta-G solvation = -61.918462 kcal Electronic energy + Delta-G solvation = -23340.138966 eV Core-core repulsion = 19964.298020 eV Total energy + Delta-G solvation = -3375.840947 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50422 -39.03726 -37.44125 -35.01998 -33.16142 -32.54719 -31.65521 -30.49748 -29.92033 -27.10537 -26.92775 -24.61366 -23.15852 -22.30001 -21.53262 -20.19840 -19.34643 -17.92079 -17.47002 -16.16393 -15.96596 -15.52255 -15.45114 -15.16432 -14.46643 -14.29301 -14.23670 -13.73330 -13.45904 -13.27988 -12.99623 -12.70646 -12.57072 -12.52433 -12.14821 -11.90416 -11.73961 -11.54167 -11.47311 -11.27583 -11.00181 -10.93146 -10.85124 -10.76241 -10.32653 -10.20965 -9.64449 -9.09049 -9.01065 -8.88304 -8.53315 -8.17239 -7.88804 -6.15421 -4.25240 1.22955 1.37729 2.96518 3.21469 3.26431 3.30089 3.32339 3.67767 4.12011 4.34600 4.60091 4.73026 4.78501 4.98878 5.02979 5.14682 5.16149 5.23788 5.27479 5.38696 5.44699 5.50666 5.60168 5.65591 5.70658 5.98686 6.05979 6.26558 6.34674 6.38297 6.45245 6.47534 6.64820 6.71450 7.02175 7.17197 7.32655 7.38859 7.43109 7.59503 7.69941 7.86554 8.14719 8.58208 8.73649 9.04853 9.42051 10.89913 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.003481 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.302628 B = 8040.992595 C = 8690.084999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.703 5.703 14 C 0.506 3.494 15 O -0.525 6.525 16 C 0.063 3.937 17 H 0.093 0.907 18 C -0.174 4.174 19 O -0.282 6.282 20 C 0.141 3.859 21 C -0.158 4.158 22 C -0.078 4.078 23 C -0.166 4.166 24 C -0.049 4.049 25 C -0.116 4.116 26 C -0.215 4.215 27 H 0.050 0.950 28 H 0.023 0.977 29 H 0.038 0.962 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.388 0.612 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.312 9.483 16.019 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.352 5.352 14 C 0.289 3.711 15 O -0.401 6.401 16 C 0.003 3.997 17 H 0.110 0.890 18 C -0.231 4.231 19 O -0.194 6.194 20 C 0.095 3.905 21 C -0.177 4.177 22 C -0.096 4.096 23 C -0.185 4.185 24 C -0.049 4.049 25 C -0.172 4.172 26 C -0.234 4.234 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.221 0.779 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.955 9.239 14.974 19.310 hybrid contribution 1.463 -0.029 0.351 1.505 sum -6.492 9.210 15.326 19.022 Atomic orbital electron populations 1.21851 0.98291 0.98134 1.01306 1.21940 0.92635 0.99684 1.02356 1.18835 0.94282 0.89197 0.80645 0.93209 1.21247 0.90572 1.39124 1.06379 0.91995 1.24889 0.98659 0.94770 0.95365 1.69906 1.35078 1.37509 1.09322 0.86391 0.84776 0.77785 0.78135 1.19747 1.20855 1.20871 1.46416 1.13956 1.56062 1.18810 1.19790 0.83368 0.80081 0.87907 1.90712 1.51076 1.58538 1.39794 1.22381 0.83820 0.97252 0.96277 0.88969 1.22317 1.04035 0.99630 0.97155 1.86247 1.30536 1.44850 1.57750 1.19129 0.94092 0.87482 0.89781 1.20468 0.95932 0.98285 1.03000 1.20921 0.99133 0.95239 0.94268 1.20894 0.94495 1.02143 1.00920 1.19693 0.95021 0.94347 0.95814 1.20818 0.98002 1.01344 0.97078 1.21211 1.01024 1.01613 0.99527 0.93134 0.95769 0.94271 0.88204 0.94962 0.92560 0.77948 0.90112 0.91260 0.90747 0.85126 0.85497 0.86189 0.91018 0.91425 0.91416 0.85217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.53 -13.81 8.73 -34.44 -0.30 -14.11 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.40 11.29 55.43 0.63 -23.77 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.70 -14.10 4.91 -54.93 -0.27 -14.37 16 14 C 0.51 10.08 5.80 -10.99 -0.06 10.02 16 15 O -0.52 -12.69 13.64 -14.35 -0.20 -12.88 16 16 C 0.06 0.96 2.65 -27.88 -0.07 0.89 16 17 H 0.09 1.22 6.31 -51.93 -0.33 0.90 16 18 C -0.17 -2.13 9.06 37.16 0.34 -1.79 16 19 O -0.28 -4.76 9.33 -39.34 -0.37 -5.12 16 20 C 0.14 2.02 6.60 -39.22 -0.26 1.76 16 21 C -0.16 -2.04 9.99 -39.44 -0.39 -2.44 16 22 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 23 C -0.17 -1.67 9.70 -39.56 -0.38 -2.05 16 24 C -0.05 -0.51 5.88 -104.65 -0.62 -1.13 16 25 C -0.12 -0.89 10.01 36.00 0.36 -0.53 16 26 C -0.22 -2.61 7.89 -39.43 -0.31 -2.92 16 27 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 30 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.39 6.59 7.96 -40.82 -0.32 6.26 16 34 H 0.08 0.86 7.56 -51.93 -0.39 0.47 16 35 H 0.07 0.72 6.91 -51.93 -0.36 0.37 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 42 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 43 H 0.13 1.40 5.43 -52.49 -0.29 1.11 16 LS Contribution 348.02 15.07 5.24 5.24 Total: -1.00 -30.92 348.02 -8.59 -39.51 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -6.43 Total: 7.42 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -2.18 Total: -11.29 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.36 Total: -38.15 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.56 Total: -18.01 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.92 -8.59 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183921108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.409 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds