Wall clock time and date at job start Tue Mar 31 2020 06:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 H 1.09003 * 109.46612 * 304.99830 * 3 2 1 5 5 C 1.50699 * 109.47132 * 185.00052 * 3 2 1 6 6 H 1.08002 * 120.00001 * 239.99649 * 5 3 2 7 7 C 1.37874 * 120.00505 * 59.99857 * 5 3 2 8 8 N 1.31521 * 119.99709 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00360 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47067 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47323 * 119.99987 * 9 7 5 12 12 H 1.48498 * 109.47381 * 239.99850 * 9 7 5 13 13 N 1.46500 * 109.47312 * 64.99606 * 3 2 1 14 14 C 1.34772 * 119.99978 * 275.00242 * 13 3 2 15 15 O 1.21281 * 120.00222 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99740 * 179.97438 * 14 13 3 17 17 H 1.09000 * 109.47569 * 60.00214 * 16 14 13 18 18 C 1.52998 * 109.47250 * 299.99894 * 16 14 13 19 19 O 1.42903 * 109.47222 * 180.02562 * 16 14 13 20 20 C 1.35900 * 117.00422 * 204.68777 * 19 16 14 21 21 C 1.38748 * 120.06003 * 174.63496 * 20 19 16 22 22 C 1.38121 * 119.94817 * 180.02562 * 21 20 19 23 23 C 1.38289 * 120.05232 * 0.02562 * 22 21 20 24 24 C 1.38250 * 120.11544 * 359.95388 * 23 22 21 25 25 C 1.50695 * 119.97408 * 179.97438 * 24 23 22 26 26 C 1.38166 * 120.04955 * 0.27924 * 24 23 22 27 27 H 1.09000 * 109.47322 * 60.00573 * 1 2 3 28 28 H 1.09006 * 109.47330 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47396 * 300.00216 * 1 2 3 30 30 H 1.08999 * 109.47396 * 239.99784 * 2 1 3 31 31 H 1.09005 * 109.46869 * 119.99979 * 2 1 3 32 32 H 0.96999 * 120.00014 * 179.97438 * 8 7 5 33 33 H 0.97003 * 119.99674 * 94.99931 * 13 3 2 34 34 H 1.09002 * 109.47041 * 60.00152 * 18 16 14 35 35 H 1.09004 * 109.47559 * 180.02562 * 18 16 14 36 36 H 1.09007 * 109.47241 * 299.99947 * 18 16 14 37 37 H 1.07998 * 120.02842 * 0.02562 * 21 20 19 38 38 H 1.07997 * 119.97701 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.94608 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.46762 * 90.00175 * 25 24 23 41 41 H 1.08999 * 109.47154 * 209.99707 * 25 24 23 42 42 H 1.08999 * 109.47155 * 330.00222 * 25 24 23 43 43 H 1.08000 * 120.02398 * 179.74161 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0049 0.8800 -1.3810 10 1 6.5987 1.5452 -0.1936 11 1 6.4961 -0.5191 -1.4625 12 1 6.4000 1.6155 -2.6090 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3668 15 8 -0.3396 2.6319 0.4343 16 6 0.0362 3.3377 2.6547 17 1 0.7275 4.1531 2.8678 18 6 0.0797 2.3206 3.7967 19 8 -1.2893 3.8569 2.5301 20 6 -1.6223 4.8987 3.3367 21 6 -2.8525 5.5240 3.1922 22 6 -3.1883 6.5830 4.0129 23 6 -2.2994 7.0205 4.9777 24 6 -1.0732 6.3989 5.1240 25 6 -0.1067 6.8786 6.1760 26 6 -0.7307 5.3423 4.3023 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.8293 -0.0613 -2.9498 33 1 2.2719 2.1232 1.9978 34 1 1.0906 1.9242 3.8919 35 1 -0.2093 2.8074 4.7282 36 1 -0.6118 1.5052 3.5837 37 1 -3.5469 5.1830 2.4386 38 1 -4.1455 7.0703 3.9005 39 1 -2.5636 7.8489 5.6182 40 1 -0.2861 6.3402 7.1067 41 1 0.9145 6.6959 5.8416 42 1 -0.2496 7.9466 6.3407 43 1 0.2290 4.8597 4.4142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183921108.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:14 Heat of formation + Delta-G solvation = -79.792874 kcal Electronic energy + Delta-G solvation = -23340.914059 eV Core-core repulsion = 19964.298020 eV Total energy + Delta-G solvation = -3376.616039 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.66069 -40.44734 -38.55645 -36.88323 -34.56817 -33.86510 -33.14625 -31.98770 -30.85155 -28.90913 -27.76648 -25.89265 -24.91781 -23.45519 -22.42963 -21.84381 -21.08872 -19.09376 -18.96771 -17.67420 -17.27765 -16.86575 -16.78006 -16.54537 -15.96129 -15.86746 -15.16135 -14.92582 -14.61321 -14.47105 -14.23959 -14.01129 -13.93342 -13.54448 -13.36522 -13.24934 -13.16703 -12.90591 -12.86652 -12.70875 -12.64745 -12.32469 -12.14506 -12.06927 -11.89980 -11.72484 -11.59476 -11.05791 -10.66526 -10.51357 -9.74808 -9.70192 -9.12404 -8.16379 -6.34076 0.38008 0.48396 1.44864 1.46042 1.57621 1.67778 1.77919 2.40760 2.79862 2.81159 3.13459 3.61473 3.80290 3.86329 3.92156 3.99482 4.19287 4.37909 4.44678 4.47160 4.54809 4.59257 4.63882 4.74070 4.75482 4.83231 4.87713 4.95602 5.03830 5.09730 5.23816 5.30378 5.37825 5.41625 5.51133 5.52539 5.59469 5.66375 5.76863 5.85937 5.92983 6.15193 6.42673 6.73498 6.90789 7.31913 7.50251 8.89305 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.003481 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.302628 B = 8040.992595 C = 8690.084999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.546 4.546 6 H 0.076 0.924 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.694 5.694 14 C 0.501 3.499 15 O -0.575 6.575 16 C 0.073 3.927 17 H 0.116 0.884 18 C -0.166 4.166 19 O -0.315 6.315 20 C 0.110 3.890 21 C -0.182 4.182 22 C -0.076 4.076 23 C -0.164 4.164 24 C -0.052 4.052 25 C -0.115 4.115 26 C -0.221 4.221 27 H 0.022 0.978 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.265 0.735 33 H 0.406 0.594 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.122 0.878 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 10.770 19.241 22.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.584 4.584 6 H 0.094 0.906 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.213 1.213 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.455 6.455 16 C 0.014 3.986 17 H 0.133 0.867 18 C -0.223 4.223 19 O -0.228 6.228 20 C 0.066 3.934 21 C -0.201 4.201 22 C -0.094 4.094 23 C -0.182 4.182 24 C -0.052 4.052 25 C -0.171 4.171 26 C -0.240 4.240 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.242 0.758 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.078 0.922 37 H 0.140 0.860 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.810 10.542 18.254 22.152 hybrid contribution 1.015 -0.328 -0.631 1.239 sum -5.795 10.214 17.623 21.177 Atomic orbital electron populations 1.21690 0.97292 0.99143 1.00080 1.21784 0.93406 0.99092 1.01595 1.18416 0.93854 0.89162 0.80989 0.98609 1.21595 0.91117 1.38914 1.06815 0.90628 1.25789 1.03376 0.94373 0.95022 1.70065 1.37064 1.38362 1.09902 0.85301 0.79021 0.77799 0.78230 1.18176 1.20496 1.21251 1.46114 1.14696 1.55771 1.17928 1.20658 0.82419 0.79197 0.89129 1.90689 1.52416 1.60298 1.42076 1.22288 0.84175 0.98261 0.93910 0.86670 1.22311 1.04933 0.98436 0.96636 1.86185 1.31025 1.46263 1.59377 1.19416 0.95345 0.87800 0.90882 1.20668 0.95896 0.99565 1.03954 1.21252 1.00384 0.94200 0.93535 1.21319 0.93987 1.02378 1.00534 1.20117 0.95807 0.93493 0.95829 1.20885 0.97345 1.02358 0.96514 1.21389 1.01096 1.02248 0.99254 0.95924 0.93468 0.93921 0.90916 0.93520 0.92617 0.75783 0.88124 0.88923 0.92208 0.86017 0.82910 0.83267 0.89700 0.91016 0.89934 0.84030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.51 71.98 0.61 -5.15 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.28 14.19 2.24 44.24 0.10 14.29 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.26 16 5 C -0.55 -28.28 8.73 25.60 0.22 -28.06 16 6 H 0.08 3.62 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.92 -52.15 11.29 21.45 0.24 -51.90 16 9 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 10 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 13 N -0.69 -27.96 4.91 -446.10 -2.19 -30.16 16 14 C 0.50 20.35 5.80 87.66 0.51 20.86 16 15 O -0.58 -29.26 13.64 16.01 0.22 -29.04 16 16 C 0.07 2.20 2.65 29.85 0.08 2.28 16 17 H 0.12 2.88 6.31 -2.39 -0.02 2.86 16 18 C -0.17 -3.76 9.06 71.98 0.65 -3.11 16 19 O -0.32 -10.86 9.33 -73.39 -0.68 -11.54 16 20 C 0.11 3.15 6.60 22.51 0.15 3.29 16 21 C -0.18 -4.72 9.99 22.36 0.22 -4.50 16 22 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 23 C -0.16 -2.79 9.70 22.28 0.22 -2.58 16 24 C -0.05 -0.95 5.88 -19.88 -0.12 -1.07 16 25 C -0.11 -1.33 10.01 71.23 0.71 -0.61 16 26 C -0.22 -4.98 7.89 22.37 0.18 -4.80 16 27 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 28 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 30 H 0.07 4.00 5.95 -2.39 -0.01 3.99 16 31 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 32 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.41 13.23 7.96 -92.71 -0.74 12.50 16 34 H 0.10 1.86 7.56 -2.39 -0.02 1.84 16 35 H 0.09 1.69 6.91 -2.39 -0.02 1.67 16 36 H 0.06 1.54 8.14 -2.38 -0.02 1.53 16 37 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 38 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 42 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 43 H 0.14 2.69 5.43 -2.91 -0.02 2.67 16 Total: -1.00 -70.57 348.02 4.26 -66.31 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: 0.27 Total: 27.79 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 4.37 Total: -14.90 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.95 Total: -82.06 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -0.47 Total: -40.59 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -70.57 4.26 -66.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183921108.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.480 kcal (2) G-P(sol) polarization free energy of solvation -70.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds