Wall clock time and date at job start Tue Mar 31 2020 06:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48506 * 109.47256 * 275.09053 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 13 3 17 17 O 1.42898 * 109.47657 * 179.97438 * 16 14 13 18 18 C 1.35891 * 117.00414 * 180.02562 * 17 16 14 19 19 C 1.38758 * 120.05548 * 359.97438 * 18 17 16 20 20 C 1.38126 * 119.94388 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.96966 * 180.02562 * 20 19 18 22 22 C 1.38286 * 120.05356 * 0.02562 * 20 19 18 23 23 C 1.38239 * 120.11487 * 359.96302 * 22 20 19 24 24 C 1.38162 * 120.05625 * 359.75940 * 23 22 20 25 25 C 1.50702 * 120.03186 * 180.25600 * 24 23 22 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 31 31 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 33 33 H 1.09004 * 109.46977 * 300.00150 * 16 14 13 34 34 H 1.09007 * 109.47227 * 59.99745 * 16 14 13 35 35 H 1.07993 * 120.02854 * 359.97438 * 19 18 17 36 36 H 1.09001 * 109.47053 * 89.99924 * 21 20 19 37 37 H 1.09004 * 109.46815 * 209.99532 * 21 20 19 38 38 H 1.08996 * 109.47072 * 329.99270 * 21 20 19 39 39 H 1.08008 * 119.94146 * 179.97438 * 22 20 19 40 40 H 1.08010 * 119.97409 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.47283 * 270.28252 * 25 24 23 42 42 H 1.09004 * 109.47007 * 30.27898 * 25 24 23 43 43 H 1.08994 * 109.47111 * 150.27645 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2162 3.0796 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 8 -1.2622 3.8472 -2.5747 18 6 -1.7660 4.4849 -3.6637 19 6 -0.9989 4.6087 -4.8133 20 6 -1.5130 5.2579 -5.9188 21 6 -0.6806 5.3920 -7.1678 22 6 -2.7910 5.7847 -5.8803 23 6 -3.5574 5.6626 -4.7363 24 6 -3.0499 5.0091 -3.6298 25 6 -3.8880 4.8712 -2.3850 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8280 1.5271 2.3972 32 1 2.2931 2.1156 -1.9978 33 1 0.7582 4.1421 -2.8919 34 1 0.1042 2.5998 -3.4936 35 1 -0.0003 4.1985 -4.8434 36 1 -0.8574 4.5339 -7.8162 37 1 -0.9571 6.3068 -7.6921 38 1 0.3748 5.4326 -6.8984 39 1 -3.1911 6.2923 -6.7456 40 1 -4.5555 6.0746 -4.7089 41 1 -3.7171 5.7294 -1.7350 42 1 -4.9420 4.8277 -2.6596 43 1 -3.6113 3.9570 -1.8601 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183923808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:48 Heat of formation + Delta-G solvation = -67.198968 kcal Electronic energy + Delta-G solvation = -23089.555576 eV Core-core repulsion = 19713.485649 eV Total energy + Delta-G solvation = -3376.069927 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47538 -39.15427 -37.48080 -35.17268 -33.89245 -32.44169 -31.67134 -30.26479 -29.32301 -28.57678 -27.07242 -24.86080 -23.00299 -22.45733 -21.18440 -20.49640 -19.62216 -17.67205 -17.49815 -16.40779 -16.28117 -15.72153 -15.57173 -15.35532 -14.55879 -14.28381 -14.15387 -13.82146 -13.58583 -13.28683 -13.00726 -12.88119 -12.77988 -12.53872 -12.39159 -11.95320 -11.94655 -11.89364 -11.66165 -11.39873 -11.00785 -10.95236 -10.92106 -10.73477 -10.69833 -10.00288 -9.89087 -9.27644 -9.16551 -8.83126 -8.75372 -8.13676 -8.09046 -6.27652 -4.31816 1.17598 1.33948 2.86258 3.11812 3.25408 3.32462 3.39876 3.59488 4.12306 4.29443 4.56066 4.66784 4.86235 4.94923 5.04237 5.07340 5.14901 5.16265 5.29350 5.37600 5.42256 5.51904 5.58884 5.59418 5.72231 5.86161 6.02357 6.06223 6.18489 6.21605 6.22669 6.39097 6.45920 6.60300 6.69307 6.76033 6.91435 6.96718 7.22539 7.28263 7.37280 7.49052 8.06523 8.47182 8.71602 8.86737 9.33917 10.83844 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003488 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.179999 B = 8024.475521 C = 8539.070674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.240 3.760 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.079 0.921 7 C 0.082 3.918 8 N -0.888 5.888 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.285 1.285 13 N -0.699 5.699 14 C 0.503 3.497 15 O -0.529 6.529 16 C 0.038 3.962 17 O -0.283 6.283 18 C 0.136 3.864 19 C -0.209 4.209 20 C -0.054 4.054 21 C -0.115 4.115 22 C -0.160 4.160 23 C -0.081 4.081 24 C -0.121 4.121 25 C -0.106 4.106 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.031 0.969 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.268 0.732 32 H 0.394 0.606 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.129 0.871 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.988 6.734 -15.122 21.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.524 5.524 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.211 1.211 13 N -0.349 5.349 14 C 0.286 3.714 15 O -0.406 6.406 16 C -0.041 4.041 17 O -0.195 6.195 18 C 0.090 3.910 19 C -0.228 4.228 20 C -0.054 4.054 21 C -0.172 4.172 22 C -0.178 4.178 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.163 4.163 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.227 0.773 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.147 0.853 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.458 6.658 -14.092 21.259 hybrid contribution 0.197 0.143 0.230 0.335 sum -14.261 6.802 -13.862 21.019 Atomic orbital electron populations 1.21912 0.97361 0.98956 1.02067 1.22100 0.93696 0.99369 1.01355 1.19179 0.95573 0.89043 0.82383 0.93116 1.20992 0.88525 1.52518 0.95025 0.90271 1.24916 0.94886 0.93544 0.98889 1.69873 1.09629 1.48400 1.24469 0.86930 0.81312 0.79592 0.82352 1.19814 1.18212 1.21131 1.46466 1.13837 1.56062 1.18555 1.19890 0.83340 0.79890 0.88270 1.90707 1.50522 1.58717 1.40683 1.22649 0.83617 0.99172 0.98654 1.86176 1.29882 1.68935 1.34513 1.18917 0.92884 0.92970 0.86235 1.21150 1.01216 1.06740 0.93676 1.19671 0.94597 0.96144 0.95033 1.20807 0.99255 1.02321 0.94783 1.20877 0.94517 1.03829 0.98590 1.20840 0.99593 0.97449 0.92043 1.19282 0.92893 1.02190 0.97775 1.20621 0.97845 1.03320 0.94524 0.93050 0.93225 0.95001 0.92913 0.91958 0.92167 0.77274 0.89389 0.89571 0.85339 0.91038 0.91457 0.91427 0.86136 0.85524 0.91415 0.91961 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.53 37.16 0.32 -2.58 16 2 C -0.13 -2.69 5.54 -26.73 -0.15 -2.84 16 3 C 0.24 5.53 1.82 -69.08 -0.13 5.41 16 4 H 0.05 1.29 4.92 -51.93 -0.26 1.04 16 5 C -0.53 -13.94 9.05 -34.44 -0.31 -14.25 16 6 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.75 13.96 55.43 0.77 -24.98 16 9 Si 0.87 21.30 26.69 -169.99 -4.54 16.76 16 10 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.26 -6.18 6.88 56.52 0.39 -5.79 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.70 -13.36 5.03 -54.93 -0.28 -13.63 16 14 C 0.50 9.40 6.51 -10.98 -0.07 9.32 16 15 O -0.53 -11.92 13.64 -14.35 -0.20 -12.12 16 16 C 0.04 0.54 5.22 36.00 0.19 0.73 16 17 O -0.28 -4.52 8.71 -39.31 -0.34 -4.86 16 18 C 0.14 1.88 6.66 -39.21 -0.26 1.62 16 19 C -0.21 -2.46 8.69 -39.43 -0.34 -2.80 16 20 C -0.05 -0.56 5.88 -104.65 -0.62 -1.18 16 21 C -0.12 -0.87 10.01 36.01 0.36 -0.50 16 22 C -0.16 -1.58 9.70 -39.56 -0.38 -1.96 16 23 C -0.08 -0.85 9.70 -39.61 -0.38 -1.23 16 24 C -0.12 -1.53 5.89 -104.47 -0.62 -2.14 16 25 C -0.11 -1.25 9.79 36.01 0.35 -0.90 16 26 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 27 H 0.05 0.98 5.63 -51.93 -0.29 0.69 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 1.38 7.90 -51.93 -0.41 0.97 16 31 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 32 H 0.39 6.43 8.59 -40.82 -0.35 6.08 16 33 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 34 H 0.09 0.99 7.66 -51.93 -0.40 0.59 16 35 H 0.13 1.30 6.30 -52.49 -0.33 0.97 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 38 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 40 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 43 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -31.68 350.97 -8.03 -39.71 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.60 Total: 4.97 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -2.14 Total: -11.14 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.50 Total: -38.61 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.54 Total: -16.98 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.54 Total: 16.76 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.68 -8.03 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183923808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.487 kcal (2) G-P(sol) polarization free energy of solvation -31.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds