Wall clock time and date at job start Tue Mar 31 2020 06:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31513 * 120.00011 * 176.07000 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48506 * 109.47256 * 275.09053 * 9 7 5 11 11 H 1.48503 * 109.47330 * 35.09078 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21285 * 120.00088 * 359.97438 * 14 13 3 16 16 C 1.50699 * 120.00031 * 180.02562 * 14 13 3 17 17 O 1.42898 * 109.47657 * 179.97438 * 16 14 13 18 18 C 1.35891 * 117.00414 * 180.02562 * 17 16 14 19 19 C 1.38758 * 120.05548 * 359.97438 * 18 17 16 20 20 C 1.38126 * 119.94388 * 180.02562 * 19 18 17 21 21 C 1.50699 * 119.96966 * 180.02562 * 20 19 18 22 22 C 1.38286 * 120.05356 * 0.02562 * 20 19 18 23 23 C 1.38239 * 120.11487 * 359.96302 * 22 20 19 24 24 C 1.38162 * 120.05625 * 359.75940 * 23 22 20 25 25 C 1.50702 * 120.03186 * 180.25600 * 24 23 22 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 30 30 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 31 31 H 0.97000 * 120.00194 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 33 33 H 1.09004 * 109.46977 * 300.00150 * 16 14 13 34 34 H 1.09007 * 109.47227 * 59.99745 * 16 14 13 35 35 H 1.07993 * 120.02854 * 359.97438 * 19 18 17 36 36 H 1.09001 * 109.47053 * 89.99924 * 21 20 19 37 37 H 1.09004 * 109.46815 * 209.99532 * 21 20 19 38 38 H 1.08996 * 109.47072 * 329.99270 * 21 20 19 39 39 H 1.08008 * 119.94146 * 179.97438 * 22 20 19 40 40 H 1.08010 * 119.97409 * 180.02562 * 23 22 20 41 41 H 1.09005 * 109.47283 * 270.28252 * 25 24 23 42 42 H 1.09004 * 109.47007 * 30.27898 * 25 24 23 43 43 H 1.08994 * 109.47111 * 150.27645 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4621 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2162 3.0796 11 1 1.7675 1.0282 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3349 2.6302 -0.4641 16 6 0.0645 3.3276 -2.6831 17 8 -1.2622 3.8472 -2.5747 18 6 -1.7660 4.4849 -3.6637 19 6 -0.9989 4.6087 -4.8133 20 6 -1.5130 5.2579 -5.9188 21 6 -0.6806 5.3920 -7.1678 22 6 -2.7910 5.7847 -5.8803 23 6 -3.5574 5.6626 -4.7363 24 6 -3.0499 5.0091 -3.6298 25 6 -3.8880 4.8712 -2.3850 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8280 1.5271 2.3972 32 1 2.2931 2.1156 -1.9978 33 1 0.7582 4.1421 -2.8919 34 1 0.1042 2.5998 -3.4936 35 1 -0.0003 4.1985 -4.8434 36 1 -0.8574 4.5339 -7.8162 37 1 -0.9571 6.3068 -7.6921 38 1 0.3748 5.4326 -6.8984 39 1 -3.1911 6.2923 -6.7456 40 1 -4.5555 6.0746 -4.7089 41 1 -3.7171 5.7294 -1.7350 42 1 -4.9420 4.8277 -2.6596 43 1 -3.6113 3.9570 -1.8601 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183923808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:47 Heat of formation + Delta-G solvation = -86.109273 kcal Electronic energy + Delta-G solvation = -23090.375588 eV Core-core repulsion = 19713.485649 eV Total energy + Delta-G solvation = -3376.889939 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.51084 -40.55263 -38.52082 -36.91071 -34.70133 -34.42649 -33.32925 -31.16624 -30.07111 -30.03825 -28.67559 -25.64765 -24.74085 -23.54866 -22.17969 -21.88949 -21.28563 -19.30487 -18.65114 -17.91691 -17.49439 -17.10189 -16.78906 -16.42958 -15.95154 -15.91635 -15.07328 -15.01759 -14.79605 -14.67061 -14.10512 -13.97590 -13.84975 -13.78961 -13.71157 -13.65412 -13.40260 -12.95631 -12.72232 -12.66598 -12.57860 -12.38832 -12.19045 -11.88122 -11.82710 -11.80599 -11.68225 -11.23239 -10.87094 -10.72569 -9.78416 -9.64394 -9.01055 -8.40446 -6.45984 0.36266 0.49065 1.27291 1.32929 1.43367 1.65286 1.70077 2.25648 2.76911 2.79362 3.03389 3.68956 3.84908 3.92829 4.02875 4.11148 4.14850 4.29612 4.30285 4.37474 4.39530 4.52543 4.64624 4.76461 4.78274 4.79303 4.80928 4.86911 4.90972 5.08930 5.18379 5.21746 5.24430 5.37821 5.39277 5.40148 5.53648 5.54907 5.67407 5.70928 5.89687 6.11026 6.40868 6.59060 6.83831 7.19432 7.39954 8.74309 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023363 B = 0.003488 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.179999 B = 8024.475521 C = 8539.070674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 C 0.244 3.756 4 H 0.027 0.973 5 C -0.526 4.526 6 H 0.061 0.939 7 C 0.036 3.964 8 N -0.928 5.928 9 Si 0.920 3.080 10 H -0.277 1.277 11 H -0.254 1.254 12 H -0.277 1.277 13 N -0.696 5.696 14 C 0.501 3.499 15 O -0.571 6.571 16 C 0.048 3.952 17 O -0.313 6.313 18 C 0.107 3.893 19 C -0.217 4.217 20 C -0.060 4.060 21 C -0.114 4.114 22 C -0.159 4.159 23 C -0.081 4.081 24 C -0.144 4.144 25 C -0.103 4.103 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.270 0.730 32 H 0.409 0.591 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.142 0.858 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.406 7.342 -17.459 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C 0.141 3.859 4 H 0.045 0.955 5 C -0.564 4.564 6 H 0.079 0.921 7 C -0.165 4.165 8 N -0.567 5.567 9 Si 0.745 3.255 10 H -0.203 1.203 11 H -0.178 1.178 12 H -0.203 1.203 13 N -0.347 5.347 14 C 0.287 3.713 15 O -0.450 6.450 16 C -0.030 4.030 17 O -0.226 6.226 18 C 0.062 3.938 19 C -0.236 4.236 20 C -0.060 4.060 21 C -0.170 4.170 22 C -0.177 4.177 23 C -0.099 4.099 24 C -0.145 4.145 25 C -0.159 4.159 26 H 0.050 0.950 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.245 0.755 33 H 0.130 0.870 34 H 0.135 0.865 35 H 0.159 0.841 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.877 7.272 -16.468 24.003 hybrid contribution 0.589 0.005 0.816 1.006 sum -15.288 7.277 -15.652 23.058 Atomic orbital electron populations 1.21778 0.96045 1.00326 1.01035 1.22010 0.94753 0.97957 1.01535 1.18903 0.93360 0.90219 0.83449 0.95475 1.21200 0.90089 1.50923 0.94192 0.92086 1.25533 0.95673 0.93894 1.01376 1.69962 1.10995 1.50581 1.25147 0.86155 0.80119 0.79152 0.80038 1.20279 1.17818 1.20293 1.46151 1.14752 1.56057 1.17745 1.20583 0.82287 0.78971 0.89453 1.90689 1.51611 1.60121 1.42623 1.22559 0.83918 1.00346 0.96209 1.86115 1.30410 1.69892 1.36186 1.19203 0.93818 0.94332 0.86450 1.21369 1.01704 1.07019 0.93469 1.20076 0.95177 0.95195 0.95555 1.20864 0.99000 1.03490 0.93669 1.21283 0.94259 1.03008 0.99166 1.21158 1.00737 0.96606 0.91409 1.19560 0.92963 1.03227 0.98727 1.20573 0.99219 1.01781 0.94349 0.95035 0.93323 0.92334 0.91499 0.93012 0.92018 0.75532 0.87043 0.86476 0.84057 0.90028 0.89994 0.91035 0.83405 0.83075 0.91686 0.89670 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.53 71.98 0.61 -4.61 16 2 C -0.12 -5.16 5.54 30.59 0.17 -4.99 16 3 C 0.24 11.22 1.82 44.25 0.08 11.30 16 4 H 0.03 1.40 4.92 -2.39 -0.01 1.38 16 5 C -0.53 -27.72 9.05 25.60 0.23 -27.49 16 6 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 7 C 0.04 2.00 5.47 84.65 0.46 2.46 16 8 N -0.93 -54.69 13.96 21.45 0.30 -54.39 16 9 Si 0.92 44.46 26.69 68.60 1.83 46.29 16 10 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 11 H -0.25 -12.01 6.88 99.48 0.68 -11.32 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 N -0.70 -26.09 5.03 -446.08 -2.24 -28.34 16 14 C 0.50 18.45 6.51 87.66 0.57 19.02 16 15 O -0.57 -25.96 13.64 15.99 0.22 -25.74 16 16 C 0.05 1.29 5.22 71.24 0.37 1.66 16 17 O -0.31 -9.90 8.71 -73.29 -0.64 -10.54 16 18 C 0.11 2.86 6.66 22.51 0.15 3.01 16 19 C -0.22 -4.67 8.69 22.37 0.19 -4.48 16 20 C -0.06 -1.07 5.88 -19.88 -0.12 -1.19 16 21 C -0.11 -1.32 10.01 71.24 0.71 -0.61 16 22 C -0.16 -2.64 9.70 22.28 0.22 -2.42 16 23 C -0.08 -1.51 9.70 22.25 0.22 -1.29 16 24 C -0.14 -3.51 5.89 -19.77 -0.12 -3.63 16 25 C -0.10 -2.40 9.79 71.24 0.70 -1.71 16 26 H 0.03 1.32 7.88 -2.39 -0.02 1.30 16 27 H 0.05 1.88 5.63 -2.39 -0.01 1.87 16 28 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 30 H 0.05 2.25 7.90 -2.38 -0.02 2.23 16 31 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.41 12.84 8.59 -92.71 -0.80 12.05 16 33 H 0.11 2.46 7.66 -2.38 -0.02 2.44 16 34 H 0.12 2.40 7.66 -2.38 -0.02 2.38 16 35 H 0.14 2.50 6.30 -2.91 -0.02 2.49 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 38 H 0.07 0.79 8.08 -2.39 -0.02 0.77 16 39 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 41 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.08 1.51 8.09 -2.39 -0.02 1.49 16 43 H 0.05 1.38 7.53 -2.39 -0.02 1.36 16 Total: -1.00 -69.78 350.97 4.11 -65.67 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.19 Total: 22.01 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.45 Total: -14.95 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -1.94 Total: -82.73 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -0.42 Total: -36.28 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.83 Total: 46.29 kcal Total: -69.78 4.11 -65.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183923808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.438 kcal (2) G-P(sol) polarization free energy of solvation -69.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds