Wall clock time and date at job start Tue Mar 31 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 O 1.42904 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.35896 * 117.00192 * 180.02562 * 17 16 14 19 19 C 1.38751 * 120.05725 * 0.02562 * 18 17 16 20 20 C 1.38125 * 119.94743 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.96927 * 179.97438 * 20 19 18 22 22 C 1.38279 * 120.05283 * 0.02562 * 20 19 18 23 23 C 1.38247 * 120.11778 * 359.95748 * 22 20 19 24 24 C 1.38171 * 120.04848 * 359.76427 * 23 22 20 25 25 C 1.50704 * 120.02567 * 180.25082 * 24 23 22 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 28 28 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.08001 * 120.02237 * 359.97438 * 19 18 17 36 36 H 1.09007 * 109.46811 * 90.00571 * 21 20 19 37 37 H 1.09000 * 109.46949 * 209.99667 * 21 20 19 38 38 H 1.08992 * 109.47633 * 330.00128 * 21 20 19 39 39 H 1.08001 * 119.94702 * 179.97438 * 22 20 19 40 40 H 1.07991 * 119.97856 * 180.02562 * 23 22 20 41 41 H 1.08996 * 109.47218 * 270.28095 * 25 24 23 42 42 H 1.09003 * 109.47263 * 30.28150 * 25 24 23 43 43 H 1.08998 * 109.46589 * 150.27621 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 8 -1.2892 3.8570 2.5302 18 6 -1.8041 4.4998 3.6111 19 6 -1.0489 4.6288 4.7679 20 6 -1.5747 5.2822 5.8654 21 6 -0.7551 5.4221 7.1222 22 6 -2.8529 5.8071 5.8120 23 6 -3.6074 5.6803 4.6606 24 6 -3.0837 5.0326 3.5581 25 6 -3.9045 4.8996 2.3012 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -0.0510 4.2179 4.8104 36 1 -0.1770 6.3452 7.0781 37 1 -1.4180 5.4496 7.9871 38 1 -0.0776 4.5730 7.2106 39 1 -3.2625 6.3173 6.6713 40 1 -4.6052 6.0915 4.6212 41 1 -4.4867 3.9791 2.3431 42 1 -4.5784 5.7521 2.2154 43 1 -3.2421 4.8717 1.4361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183923830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:51 Heat of formation + Delta-G solvation = -66.740993 kcal Electronic energy + Delta-G solvation = -23004.946673 eV Core-core repulsion = 19628.896605 eV Total energy + Delta-G solvation = -3376.050067 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42719 -39.01469 -37.40954 -35.03419 -33.86134 -32.46376 -31.13798 -30.21024 -29.29611 -28.40805 -26.62522 -24.83046 -23.18300 -22.41523 -21.14270 -20.35158 -19.39370 -17.60705 -17.36283 -16.21258 -16.10872 -15.65279 -15.43491 -15.18862 -14.43642 -14.30438 -14.20774 -13.76764 -13.40978 -13.25859 -12.97242 -12.78952 -12.71276 -12.43953 -12.18112 -11.91790 -11.71898 -11.46270 -11.36811 -11.28576 -11.01515 -10.93215 -10.89208 -10.81408 -10.33564 -10.22021 -9.65408 -9.10329 -9.02548 -8.80339 -8.53889 -8.09104 -7.90004 -6.15864 -4.25661 1.20324 1.36976 2.94144 3.21321 3.25279 3.29824 3.32133 3.62398 4.18234 4.36779 4.58974 4.69794 4.88850 5.00216 5.07942 5.15303 5.17668 5.22688 5.35827 5.38789 5.44795 5.55525 5.60764 5.63128 5.76376 5.88734 6.21876 6.26023 6.37643 6.42509 6.43941 6.48686 6.63764 6.72821 7.01231 7.16242 7.31270 7.37224 7.39971 7.58828 7.69133 7.85812 8.13991 8.57064 8.73058 9.03775 9.41602 10.89505 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024143 B = 0.003251 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.474027 B = 8609.475834 C = 9351.173402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.704 5.704 14 C 0.503 3.497 15 O -0.525 6.525 16 C 0.038 3.962 17 O -0.282 6.282 18 C 0.136 3.864 19 C -0.210 4.210 20 C -0.055 4.055 21 C -0.115 4.115 22 C -0.160 4.160 23 C -0.081 4.081 24 C -0.120 4.120 25 C -0.107 4.107 26 H 0.023 0.977 27 H 0.037 0.963 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.389 0.611 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 8.554 16.208 20.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.354 5.354 14 C 0.286 3.714 15 O -0.401 6.401 16 C -0.041 4.041 17 O -0.194 6.194 18 C 0.090 3.910 19 C -0.228 4.228 20 C -0.055 4.055 21 C -0.171 4.171 22 C -0.179 4.179 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.163 4.163 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.865 8.378 15.116 19.900 hybrid contribution 1.547 -0.071 0.507 1.630 sum -8.318 8.307 15.623 19.552 Atomic orbital electron populations 1.21848 0.98276 0.98150 1.01273 1.21949 0.92649 0.99710 1.02376 1.18835 0.94298 0.89172 0.80602 0.93156 1.21250 0.90568 1.39142 1.06393 0.91972 1.24891 0.98677 0.94761 0.95358 1.69903 1.35090 1.37525 1.09306 0.86389 0.84754 0.77790 0.78139 1.19742 1.20858 1.20857 1.46393 1.13990 1.56146 1.18909 1.19768 0.83406 0.80085 0.88172 1.90717 1.51005 1.58569 1.39838 1.22664 0.83490 0.99015 0.98925 1.86190 1.29896 1.68642 1.34677 1.18929 0.92821 0.92922 0.86298 1.21143 1.01151 1.06830 0.93705 1.19660 0.94604 0.96161 0.95078 1.20802 0.99373 1.02481 0.94470 1.20868 0.94636 1.03718 0.98641 1.20841 0.99390 0.97760 0.91936 1.19290 0.92975 1.02158 0.97684 1.20625 0.99073 1.01656 0.94988 0.95752 0.94357 0.93082 0.88175 0.94968 0.92548 0.77885 0.89721 0.89642 0.85392 0.91050 0.91483 0.91490 0.86169 0.85530 0.91413 0.91960 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.52 37.16 0.32 -2.78 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.38 11.29 55.43 0.63 -23.75 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.70 -14.06 5.02 -54.93 -0.28 -14.33 16 14 C 0.50 9.85 6.48 -10.99 -0.07 9.78 16 15 O -0.52 -12.47 13.64 -14.35 -0.20 -12.67 16 16 C 0.04 0.56 5.22 36.01 0.19 0.75 16 17 O -0.28 -4.66 8.71 -39.32 -0.34 -5.01 16 18 C 0.14 1.94 6.66 -39.22 -0.26 1.68 16 19 C -0.21 -2.53 8.69 -39.43 -0.34 -2.87 16 20 C -0.05 -0.58 5.88 -104.65 -0.62 -1.19 16 21 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 22 C -0.16 -1.61 9.70 -39.56 -0.38 -2.00 16 23 C -0.08 -0.87 9.70 -39.60 -0.38 -1.25 16 24 C -0.12 -1.56 5.89 -104.47 -0.62 -2.18 16 25 C -0.11 -1.30 9.79 36.01 0.35 -0.94 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.54 16 28 H 0.05 1.22 7.85 -51.93 -0.41 0.82 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.39 6.52 8.54 -40.82 -0.35 6.17 16 33 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 34 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 35 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 36 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 37 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 43 H 0.08 1.08 7.53 -51.93 -0.39 0.69 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -30.85 351.47 -8.67 -39.53 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -6.61 Total: 6.31 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.15 Total: -10.64 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.35 Total: -38.09 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.54 Total: -17.67 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.85 -8.67 -39.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183923830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.216 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds