Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47045 * 120.00577 * 9 7 5 12 12 H 1.48501 * 109.46950 * 240.00369 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 O 1.42904 * 109.47077 * 180.02562 * 16 14 13 18 18 C 1.35896 * 117.00192 * 180.02562 * 17 16 14 19 19 C 1.38751 * 120.05725 * 0.02562 * 18 17 16 20 20 C 1.38125 * 119.94743 * 180.02562 * 19 18 17 21 21 C 1.50700 * 119.96927 * 179.97438 * 20 19 18 22 22 C 1.38279 * 120.05283 * 0.02562 * 20 19 18 23 23 C 1.38247 * 120.11778 * 359.95748 * 22 20 19 24 24 C 1.38171 * 120.04848 * 359.76427 * 23 22 20 25 25 C 1.50704 * 120.02567 * 180.25082 * 24 23 22 26 26 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 28 28 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 29 29 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 30 30 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 31 31 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 32 32 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 33 33 H 1.08995 * 109.47765 * 299.99977 * 16 14 13 34 34 H 1.09000 * 109.47068 * 60.00791 * 16 14 13 35 35 H 1.08001 * 120.02237 * 359.97438 * 19 18 17 36 36 H 1.09007 * 109.46811 * 90.00571 * 21 20 19 37 37 H 1.09000 * 109.46949 * 209.99667 * 21 20 19 38 38 H 1.08992 * 109.47633 * 330.00128 * 21 20 19 39 39 H 1.08001 * 119.94702 * 179.97438 * 22 20 19 40 40 H 1.07991 * 119.97856 * 180.02562 * 23 22 20 41 41 H 1.08996 * 109.47218 * 270.28095 * 25 24 23 42 42 H 1.09003 * 109.47263 * 30.28150 * 25 24 23 43 43 H 1.08998 * 109.46589 * 150.27621 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5989 1.5440 -0.1930 11 1 6.4961 -0.5192 -1.4625 12 1 6.4001 1.6154 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 8 -1.2892 3.8570 2.5302 18 6 -1.8041 4.4998 3.6111 19 6 -1.0489 4.6288 4.7679 20 6 -1.5747 5.2822 5.8654 21 6 -0.7551 5.4221 7.1222 22 6 -2.8529 5.8071 5.8120 23 6 -3.6074 5.6803 4.6606 24 6 -3.0837 5.0326 3.5581 25 6 -3.9045 4.8996 2.3012 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0607 -2.9502 32 1 2.2720 2.1231 1.9978 33 1 0.0673 2.6131 3.4684 34 1 0.7277 4.1530 2.8678 35 1 -0.0510 4.2179 4.8104 36 1 -0.1770 6.3452 7.0781 37 1 -1.4180 5.4496 7.9871 38 1 -0.0776 4.5730 7.2106 39 1 -3.2625 6.3173 6.6713 40 1 -4.6052 6.0915 4.6212 41 1 -4.4867 3.9791 2.3431 42 1 -4.5784 5.7521 2.2154 43 1 -3.2421 4.8717 1.4361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183923830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -84.456177 kcal Electronic energy + Delta-G solvation = -23005.714861 eV Core-core repulsion = 19628.896605 eV Total energy + Delta-G solvation = -3376.818255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49113 -40.49076 -38.50076 -36.87780 -34.69818 -34.34502 -32.97037 -31.15374 -30.06724 -29.86325 -28.36351 -25.65244 -25.00984 -23.51472 -22.16835 -21.89166 -21.15401 -19.03281 -18.64669 -17.58936 -17.44537 -17.10065 -16.71848 -16.43586 -16.02001 -15.82273 -15.04809 -14.95448 -14.66334 -14.58359 -14.10360 -13.89548 -13.80323 -13.69295 -13.49981 -13.39700 -13.18917 -12.88920 -12.73194 -12.66234 -12.63407 -12.19701 -12.15577 -12.07737 -11.81642 -11.78586 -11.59839 -11.06070 -10.71483 -10.53029 -9.69989 -9.63936 -9.00676 -8.16699 -6.34254 0.36654 0.49503 1.44628 1.45709 1.57250 1.71026 1.74302 2.40827 2.77660 2.90586 3.13271 3.70994 3.86526 3.93532 4.03646 4.11929 4.15280 4.30393 4.37774 4.47247 4.54837 4.64742 4.73824 4.76513 4.78539 4.80288 4.87520 4.91359 5.04167 5.18738 5.23710 5.38202 5.40670 5.41364 5.52573 5.55077 5.59468 5.67687 5.76824 5.86611 5.94160 6.15044 6.41793 6.73549 6.91622 7.32122 7.51345 8.89005 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024143 B = 0.003251 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.474027 B = 8609.475834 C = 9351.173402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.259 1.259 11 H -0.279 1.279 12 H -0.286 1.286 13 N -0.698 5.698 14 C 0.498 3.502 15 O -0.574 6.574 16 C 0.050 3.950 17 O -0.315 6.315 18 C 0.106 3.894 19 C -0.217 4.217 20 C -0.059 4.059 21 C -0.113 4.113 22 C -0.159 4.159 23 C -0.081 4.081 24 C -0.145 4.145 25 C -0.103 4.103 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.142 0.858 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.149 0.851 40 H 0.152 0.848 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.627 9.474 19.575 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.212 1.212 13 N -0.349 5.349 14 C 0.284 3.716 15 O -0.453 6.453 16 C -0.028 4.028 17 O -0.228 6.228 18 C 0.061 3.939 19 C -0.235 4.235 20 C -0.060 4.060 21 C -0.170 4.170 22 C -0.177 4.177 23 C -0.099 4.099 24 C -0.145 4.145 25 C -0.160 4.160 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.042 0.958 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.243 0.757 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.160 0.840 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.084 0.916 42 H 0.103 0.897 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.236 9.314 18.542 22.712 hybrid contribution 1.266 -0.291 -0.491 1.389 sum -7.970 9.023 18.051 21.697 Atomic orbital electron populations 1.21687 0.97200 0.99156 1.00113 1.21797 0.93494 0.99150 1.01552 1.18406 0.93816 0.89130 0.81037 0.98461 1.21604 0.91183 1.38906 1.06801 0.90661 1.25789 1.03368 0.94386 0.95033 1.70060 1.37055 1.38384 1.09882 0.85304 0.79043 0.77794 0.78226 1.18230 1.20511 1.21201 1.46093 1.14854 1.55921 1.18017 1.20609 0.82404 0.79178 0.89425 1.90698 1.52316 1.60223 1.42109 1.22551 0.83881 1.00252 0.96109 1.86130 1.30469 1.69677 1.36512 1.19231 0.93822 0.94325 0.86543 1.21367 1.01662 1.07095 0.93397 1.20078 0.95143 0.95110 0.95633 1.20862 0.99497 1.03178 0.93434 1.21284 0.94386 1.02837 0.99174 1.21157 1.00530 0.96854 0.91331 1.19562 0.93094 1.03248 0.98624 1.20573 0.98808 1.02648 0.93936 0.93493 0.93957 0.95779 0.90910 0.93644 0.92605 0.75688 0.86614 0.86859 0.83999 0.90111 0.89929 0.90926 0.83331 0.83065 0.91562 0.89660 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.52 71.98 0.61 -5.09 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.77 16 3 C 0.28 14.16 2.24 44.24 0.10 14.26 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.34 8.73 25.60 0.22 -28.11 16 6 H 0.08 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.13 11.29 21.45 0.24 -51.89 16 9 Si 0.97 41.49 29.54 68.60 2.03 43.51 16 10 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 11 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 12 H -0.29 -12.28 7.11 99.48 0.71 -11.58 16 13 N -0.70 -27.84 5.02 -446.10 -2.24 -30.08 16 14 C 0.50 19.77 6.48 87.66 0.57 20.33 16 15 O -0.57 -28.57 13.64 16.01 0.22 -28.35 16 16 C 0.05 1.43 5.22 71.24 0.37 1.80 16 17 O -0.31 -10.52 8.71 -73.35 -0.64 -11.16 16 18 C 0.11 2.95 6.66 22.51 0.15 3.10 16 19 C -0.22 -4.78 8.69 22.37 0.19 -4.59 16 20 C -0.06 -1.08 5.88 -19.88 -0.12 -1.19 16 21 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 22 C -0.16 -2.69 9.70 22.28 0.22 -2.47 16 23 C -0.08 -1.55 9.70 22.26 0.22 -1.33 16 24 C -0.14 -3.67 5.89 -19.77 -0.12 -3.79 16 25 C -0.10 -2.56 9.79 71.24 0.70 -1.86 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.88 5.64 -2.39 -0.01 1.86 16 28 H 0.02 1.19 7.85 -2.39 -0.02 1.17 16 29 H 0.07 4.01 5.95 -2.39 -0.01 3.99 16 30 H 0.04 2.06 8.14 -2.39 -0.02 2.05 16 31 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.41 13.09 8.54 -92.70 -0.79 12.30 16 33 H 0.12 2.56 7.66 -2.39 -0.02 2.54 16 34 H 0.11 2.57 7.66 -2.39 -0.02 2.55 16 35 H 0.14 2.56 6.30 -2.91 -0.02 2.55 16 36 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.08 0.71 8.08 -2.39 -0.02 0.70 16 38 H 0.07 0.77 8.08 -2.39 -0.02 0.76 16 39 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.15 2.03 8.06 -2.92 -0.02 2.01 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 43 H 0.04 1.39 7.53 -2.39 -0.02 1.37 16 Total: -1.00 -70.34 351.47 4.27 -66.08 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.22 Total: 25.99 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: 4.44 Total: -14.10 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.00 Total: -81.97 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.42 Total: -39.51 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -70.34 4.27 -66.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183923830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.379 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds