Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46976 * 325.00337 * 12 11 9 14 14 C 1.50698 * 109.47408 * 205.00521 * 12 11 9 15 15 H 1.07999 * 119.99829 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00459 * 180.02562 * 14 12 11 17 17 N 1.31521 * 119.99494 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00222 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47117 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46928 * 119.99820 * 18 16 14 21 21 H 1.48501 * 109.47061 * 239.99526 * 18 16 14 22 22 C 1.53002 * 109.47205 * 85.00140 * 12 11 9 23 23 C 1.52998 * 109.47024 * 295.00282 * 22 12 11 24 24 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 25 25 C 1.38145 * 120.05942 * 359.97438 * 24 7 6 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 32 32 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 33 33 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 34 34 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 35 35 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 36 36 H 0.96998 * 119.99764 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.46812 * 55.00283 * 22 12 11 38 38 H 1.08996 * 109.46931 * 174.99675 * 22 12 11 39 39 H 1.08996 * 109.47327 * 299.99686 * 23 22 12 40 40 H 1.09003 * 109.47175 * 59.99643 * 23 22 12 41 41 H 1.09003 * 109.47066 * 179.97438 * 23 22 12 42 42 H 1.08009 * 119.97583 * 179.97438 * 24 7 6 43 43 H 1.08000 * 120.03441 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.1406 2.8850 3.6743 14 6 11.1758 3.1647 3.0963 15 1 11.5944 3.5696 2.1868 16 6 11.8231 3.3570 4.2984 17 7 11.3135 2.8635 5.4059 18 14 13.4238 4.3183 4.3540 19 1 13.7819 4.7631 2.9833 20 1 13.2586 5.5042 5.2324 21 1 14.5035 3.4513 4.8906 22 6 10.1235 0.9707 3.5740 23 6 8.7909 0.2225 3.6458 24 6 5.2549 2.9853 0.0010 25 6 3.8850 2.8070 0.0003 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7884 -0.5724 0.0117 32 1 6.2281 -0.2456 0.0032 33 1 8.0671 1.2509 -0.5113 34 1 7.8338 3.0155 -0.5117 35 1 10.0263 2.4075 0.9329 36 1 11.7687 2.9990 6.2516 37 1 10.7999 0.4444 2.9006 38 1 10.5667 1.0199 4.5686 39 1 8.1145 0.7488 4.3192 40 1 8.3478 0.1733 2.6511 41 1 8.9611 -0.7879 4.0178 42 1 5.6690 3.9828 0.0011 43 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183924820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = -66.745472 kcal Electronic energy + Delta-G solvation = -22859.583501 eV Core-core repulsion = 19483.533240 eV Total energy + Delta-G solvation = -3376.050261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19622 -39.03101 -37.46723 -34.98874 -32.64556 -32.30088 -31.42440 -30.83956 -30.56921 -27.43853 -26.17937 -24.13381 -23.03794 -22.13099 -21.35369 -20.05872 -19.24348 -18.29100 -17.05804 -16.23067 -16.05305 -15.78317 -15.41889 -15.00392 -14.69581 -14.32542 -13.95478 -13.57176 -13.48693 -13.39432 -12.96117 -12.82532 -12.66218 -12.37353 -11.91199 -11.83780 -11.63689 -11.43046 -11.23020 -11.21678 -10.93684 -10.82072 -10.79510 -10.69170 -10.29214 -10.14224 -9.60505 -9.03032 -8.93271 -8.87457 -8.48313 -7.96684 -7.76059 -6.11023 -4.20252 1.46604 1.52188 3.11961 3.23877 3.31851 3.34318 3.49479 3.78592 4.26295 4.48974 4.68143 4.69763 4.89578 4.94069 4.95445 5.02139 5.20208 5.24362 5.38903 5.46388 5.52277 5.62872 5.71559 5.72173 5.77748 5.86051 6.13262 6.35036 6.41188 6.43206 6.48233 6.68879 6.76191 6.84976 7.06246 7.23120 7.40375 7.42588 7.51334 7.64641 7.77002 7.93398 8.20830 8.72973 8.81335 9.21784 9.47777 10.94305 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.002934 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.771758 B = 9539.905812 C = 9822.352990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.121 3.879 5 C -0.207 4.207 6 C -0.066 4.066 7 C -0.088 4.088 8 C -0.104 4.104 9 C 0.500 3.500 10 O -0.541 6.541 11 N -0.712 5.712 12 C 0.270 3.730 13 H 0.048 0.952 14 C -0.532 4.532 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.882 5.882 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.066 4.066 25 C -0.151 4.151 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.387 0.613 36 H 0.263 0.737 37 H 0.030 0.970 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.021 0.979 42 H 0.127 0.873 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 -5.275 -13.388 20.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.076 3.924 5 C -0.225 4.225 6 C -0.084 4.084 7 C -0.089 4.089 8 C -0.144 4.144 9 C 0.285 3.715 10 O -0.419 6.419 11 N -0.360 5.360 12 C 0.168 3.832 13 H 0.066 0.934 14 C -0.571 4.571 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.166 4.166 23 C -0.193 4.193 24 C -0.084 4.084 25 C -0.169 4.169 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.219 0.781 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.040 0.960 42 H 0.145 0.855 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.882 -5.218 -12.488 20.116 hybrid contribution 1.341 0.220 -0.165 1.369 sum -13.541 -4.998 -12.653 19.195 Atomic orbital electron populations 1.21770 0.92927 1.02713 1.03447 1.22742 0.95676 0.82298 1.01381 1.86037 1.19388 1.28993 1.88988 1.18935 0.81914 0.94247 0.97311 1.21116 0.94260 0.97728 1.09436 1.20753 0.94180 0.96701 0.96797 1.19251 0.94260 0.93183 1.02188 1.20705 0.92793 1.04248 0.96688 1.20269 0.83316 0.77742 0.90203 1.90691 1.55367 1.49907 1.45897 1.46500 1.06616 1.71580 1.11306 1.18757 0.94509 0.93087 0.76814 0.93407 1.21284 1.07077 1.34623 0.94106 0.92073 1.24899 0.97843 0.95609 0.95424 1.69912 1.39146 1.44446 0.98488 0.86414 0.83009 0.79661 0.78130 1.19760 1.20909 1.20913 1.21926 0.94792 0.96223 1.03641 1.21829 0.99224 0.97751 1.00528 1.20801 0.92047 0.98696 0.96868 1.20329 0.95086 0.94632 1.06883 0.90497 0.91519 0.91629 0.92199 0.92038 0.85861 0.86048 0.88821 0.88655 0.78069 0.92657 0.95137 0.88398 0.93214 0.94256 0.96016 0.85497 0.85485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.49 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.04 10.14 -19.41 -0.20 -4.24 16 4 C 0.12 1.66 6.69 -39.21 -0.26 1.40 16 5 C -0.21 -2.71 9.04 -39.43 -0.36 -3.07 16 6 C -0.07 -0.92 9.69 -39.61 -0.38 -1.31 16 7 C -0.09 -1.29 4.37 -104.60 -0.46 -1.75 16 8 C -0.10 -1.45 5.83 -29.03 -0.17 -1.62 16 9 C 0.50 9.62 6.39 -10.98 -0.07 9.55 16 10 O -0.54 -12.55 13.17 5.56 0.07 -12.47 16 11 N -0.71 -14.42 5.02 -54.93 -0.28 -14.69 16 12 C 0.27 6.77 2.24 -69.08 -0.15 6.61 16 13 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 14 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 15 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 17 N -0.88 -24.81 11.29 55.43 0.63 -24.19 16 18 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 23 C -0.14 -3.07 8.51 37.16 0.32 -2.75 16 24 C -0.07 -0.93 9.69 -39.61 -0.38 -1.32 16 25 C -0.15 -2.07 9.99 -39.43 -0.39 -2.47 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.47 7.68 -51.93 -0.40 0.08 16 30 H 0.06 0.54 7.65 -51.93 -0.40 0.15 16 31 H 0.12 1.32 6.30 -52.49 -0.33 0.99 16 32 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 33 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 39 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 40 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.13 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -31.53 352.42 -8.40 -39.92 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -6.64 Total: 7.34 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -2.27 Total: -12.55 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.35 Total: -38.88 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.12 Total: -16.71 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.53 -8.40 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183924820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.822 kcal (2) G-P(sol) polarization free energy of solvation -31.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds