Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.46976 * 325.00337 * 12 11 9 14 14 C 1.50698 * 109.47408 * 205.00521 * 12 11 9 15 15 H 1.07999 * 119.99829 * 359.97438 * 14 12 11 16 16 C 1.37877 * 120.00459 * 180.02562 * 14 12 11 17 17 N 1.31521 * 119.99494 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 120.00222 * 179.97438 * 16 14 12 19 19 H 1.48492 * 109.47117 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46928 * 119.99820 * 18 16 14 21 21 H 1.48501 * 109.47061 * 239.99526 * 18 16 14 22 22 C 1.53002 * 109.47205 * 85.00140 * 12 11 9 23 23 C 1.52998 * 109.47024 * 295.00282 * 22 12 11 24 24 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 25 25 C 1.38145 * 120.05942 * 359.97438 * 24 7 6 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 32 32 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 33 33 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 34 34 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 35 35 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 36 36 H 0.96998 * 119.99764 * 180.02562 * 17 16 14 37 37 H 1.08996 * 109.46812 * 55.00283 * 22 12 11 38 38 H 1.08996 * 109.46931 * 174.99675 * 22 12 11 39 39 H 1.08996 * 109.47327 * 299.99686 * 23 22 12 40 40 H 1.09003 * 109.47175 * 59.99643 * 23 22 12 41 41 H 1.09003 * 109.47066 * 179.97438 * 23 22 12 42 42 H 1.08009 * 119.97583 * 179.97438 * 24 7 6 43 43 H 1.08000 * 120.03441 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.1406 2.8850 3.6743 14 6 11.1758 3.1647 3.0963 15 1 11.5944 3.5696 2.1868 16 6 11.8231 3.3570 4.2984 17 7 11.3135 2.8635 5.4059 18 14 13.4238 4.3183 4.3540 19 1 13.7819 4.7631 2.9833 20 1 13.2586 5.5042 5.2324 21 1 14.5035 3.4513 4.8906 22 6 10.1235 0.9707 3.5740 23 6 8.7909 0.2225 3.6458 24 6 5.2549 2.9853 0.0010 25 6 3.8850 2.8070 0.0003 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7884 -0.5724 0.0117 32 1 6.2281 -0.2456 0.0032 33 1 8.0671 1.2509 -0.5113 34 1 7.8338 3.0155 -0.5117 35 1 10.0263 2.4075 0.9329 36 1 11.7687 2.9990 6.2516 37 1 10.7999 0.4444 2.9006 38 1 10.5667 1.0199 4.5686 39 1 8.1145 0.7488 4.3192 40 1 8.3478 0.1733 2.6511 41 1 8.9611 -0.7879 4.0178 42 1 5.6690 3.9828 0.0011 43 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183924820.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = -85.709641 kcal Electronic energy + Delta-G solvation = -22860.405849 eV Core-core repulsion = 19483.533240 eV Total energy + Delta-G solvation = -3376.872610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.24390 -40.48009 -38.54957 -36.81718 -34.25554 -33.61920 -32.77401 -32.01861 -31.70362 -29.15036 -27.57227 -25.03244 -24.85430 -23.18375 -22.51517 -21.63114 -20.95549 -19.23680 -18.82461 -17.40933 -17.19583 -17.02214 -17.00570 -16.43022 -16.16258 -15.76018 -15.21885 -14.79800 -14.60376 -14.45829 -14.39337 -14.16940 -13.86434 -13.51392 -13.37137 -13.17631 -12.90459 -12.77541 -12.75653 -12.67193 -12.47211 -12.40286 -12.12935 -12.00200 -11.64443 -11.60015 -11.56120 -11.01062 -10.61289 -10.46061 -9.90697 -9.54032 -9.01225 -8.14477 -6.31551 0.43564 0.46338 1.44284 1.45683 1.57277 1.99147 2.28209 2.38266 2.63371 3.03991 3.15318 3.82583 3.85681 3.97642 4.05424 4.14967 4.31598 4.35826 4.39030 4.46474 4.50935 4.55535 4.59548 4.72359 4.77399 4.79531 4.92817 4.94034 5.08930 5.12535 5.20212 5.27862 5.34120 5.41446 5.47003 5.59219 5.68934 5.70718 5.83343 5.86379 5.98814 6.20706 6.48879 6.78485 7.10782 7.36655 7.71780 8.90927 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.033859 B = 0.002934 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.771758 B = 9539.905812 C = 9822.352990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.334 6.334 4 C 0.112 3.888 5 C -0.211 4.211 6 C -0.076 4.076 7 C -0.108 4.108 8 C -0.089 4.089 9 C 0.497 3.503 10 O -0.584 6.584 11 N -0.709 5.709 12 C 0.278 3.722 13 H -0.006 1.006 14 C -0.544 4.544 15 H 0.073 0.927 16 C 0.013 3.987 17 N -0.917 5.917 18 Si 0.969 3.031 19 H -0.259 1.259 20 H -0.286 1.286 21 H -0.280 1.280 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.077 4.077 25 C -0.166 4.166 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.404 0.596 36 H 0.264 0.736 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.136 0.864 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.872 -5.897 -15.410 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.248 6.248 4 C 0.067 3.933 5 C -0.230 4.230 6 C -0.094 4.094 7 C -0.108 4.108 8 C -0.129 4.129 9 C 0.285 3.715 10 O -0.465 6.465 11 N -0.358 5.358 12 C 0.174 3.826 13 H 0.012 0.988 14 C -0.583 4.583 15 H 0.091 0.909 16 C -0.187 4.187 17 N -0.556 5.556 18 Si 0.794 3.206 19 H -0.183 1.183 20 H -0.212 1.212 21 H -0.206 1.206 22 C -0.159 4.159 23 C -0.178 4.178 24 C -0.095 4.095 25 C -0.184 4.184 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.239 0.761 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.040 0.960 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.154 0.846 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.544 -5.845 -14.562 21.395 hybrid contribution 1.113 0.387 0.471 1.269 sum -13.430 -5.457 -14.091 20.217 Atomic orbital electron populations 1.21801 0.91311 1.04200 1.03179 1.23056 0.97015 0.80904 1.02096 1.86033 1.18783 1.31221 1.88801 1.19136 0.82643 0.94508 0.97020 1.21382 0.94091 0.98675 1.08829 1.21028 0.94828 0.97025 0.96547 1.19425 0.94613 0.93643 1.03153 1.20665 0.92468 1.06965 0.92784 1.21192 0.82251 0.75935 0.92167 1.90679 1.56268 1.51547 1.48008 1.46270 1.07738 1.71957 1.09880 1.18308 0.92741 0.92803 0.78703 0.98789 1.21643 1.07383 1.34639 0.94607 0.90938 1.25788 1.01262 0.96556 0.95091 1.70070 1.40694 1.45727 0.99061 0.85337 0.78750 0.77922 0.78554 1.18303 1.21191 1.20552 1.21770 0.95652 0.96354 1.02148 1.21657 0.97561 0.98210 1.00410 1.21021 0.92346 0.99275 0.96856 1.20565 0.95375 0.95356 1.07143 0.88115 0.92155 0.91522 0.90823 0.91897 0.83732 0.84698 0.85726 0.85983 0.76112 0.92730 0.93975 0.91355 0.96021 0.93389 0.93816 0.84574 0.84546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.04 0.73 5.46 71.98 0.39 1.13 16 3 O -0.33 -8.18 10.14 -92.39 -0.94 -9.12 16 4 C 0.11 3.00 6.69 22.51 0.15 3.15 16 5 C -0.21 -5.26 9.04 22.37 0.20 -5.05 16 6 C -0.08 -2.00 9.69 22.25 0.22 -1.79 16 7 C -0.11 -2.99 4.37 -19.85 -0.09 -3.07 16 8 C -0.09 -2.27 5.83 29.10 0.17 -2.10 16 9 C 0.50 18.70 6.39 87.66 0.56 19.26 16 10 O -0.58 -27.47 13.17 -3.03 -0.04 -27.51 16 11 N -0.71 -28.15 5.02 -446.09 -2.24 -30.39 16 12 C 0.28 14.17 2.24 44.25 0.10 14.27 16 13 H -0.01 -0.36 7.58 -2.38 -0.02 -0.37 16 14 C -0.54 -28.59 8.73 25.60 0.22 -28.37 16 15 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 16 C 0.01 0.69 5.29 84.65 0.45 1.13 16 17 N -0.92 -52.82 11.29 21.45 0.24 -52.58 16 18 Si 0.97 42.05 29.54 68.60 2.03 44.08 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 22 C -0.12 -5.92 5.45 30.59 0.17 -5.76 16 23 C -0.12 -5.48 8.51 71.98 0.61 -4.87 16 24 C -0.08 -2.12 9.69 22.25 0.22 -1.90 16 25 C -0.17 -4.50 9.99 22.37 0.22 -4.28 16 26 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.02 7.68 -2.39 -0.02 1.00 16 30 H 0.06 1.02 7.65 -2.39 -0.02 1.01 16 31 H 0.15 2.82 6.30 -2.91 -0.02 2.80 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.12 2.42 8.08 -2.39 -0.02 2.40 16 34 H 0.12 2.47 8.08 -2.39 -0.02 2.45 16 35 H 0.40 13.26 8.54 -92.71 -0.79 12.47 16 36 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 3.80 5.95 -2.39 -0.01 3.79 16 39 H 0.02 1.06 7.85 -2.39 -0.02 1.04 16 40 H 0.05 2.06 5.64 -2.39 -0.01 2.05 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -69.95 352.42 3.60 -66.36 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.21 Total: 28.47 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 4.33 Total: -19.31 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.00 Total: -82.98 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -0.98 Total: -36.62 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -69.95 3.60 -66.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183924820.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.354 kcal (2) G-P(sol) polarization free energy of solvation -69.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds