Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46923 * 35.00124 * 12 11 9 14 14 C 1.50701 * 109.47302 * 155.00289 * 12 11 9 15 15 H 1.07997 * 119.99685 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99799 * 179.97438 * 14 12 11 17 17 N 1.31509 * 120.00170 * 0.02562 * 16 14 12 18 18 Si 1.86809 * 119.99690 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46744 * 60.00234 * 18 16 14 20 20 H 1.48496 * 109.46920 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47196 * 300.00241 * 18 16 14 22 22 C 1.53006 * 109.47314 * 275.00240 * 12 11 9 23 23 C 1.52999 * 109.46877 * 64.99930 * 22 12 11 24 24 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 25 25 C 1.38145 * 120.05942 * 359.97438 * 24 7 6 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 32 32 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 33 33 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 34 34 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 35 35 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 36 36 H 0.97008 * 119.99825 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47075 * 184.99927 * 22 12 11 38 38 H 1.08997 * 109.46993 * 305.00385 * 22 12 11 39 39 H 1.09005 * 109.47065 * 299.99789 * 23 22 12 40 40 H 1.09001 * 109.47451 * 59.99649 * 23 22 12 41 41 H 1.08998 * 109.47246 * 180.02562 * 23 22 12 42 42 H 1.08009 * 119.97583 * 179.97438 * 24 7 6 43 43 H 1.08000 * 120.03441 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.2948 1.7163 3.6742 14 6 11.3329 1.9741 3.0962 15 1 11.8419 1.6910 2.1868 16 6 12.0079 1.9562 4.2983 17 7 11.3878 2.3004 5.4058 18 14 13.8028 1.4415 4.3540 19 1 14.6066 2.3568 3.5048 20 1 14.2930 1.5063 5.7542 21 1 13.9353 0.0520 3.8474 22 6 9.7476 3.8201 3.5742 23 6 8.2666 4.1970 3.6461 24 6 5.2549 2.9853 0.0010 25 6 3.8850 2.8070 0.0003 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7884 -0.5724 0.0117 32 1 6.2281 -0.2456 0.0032 33 1 8.0671 1.2509 -0.5113 34 1 7.8338 3.0155 -0.5117 35 1 10.0263 2.4075 0.9329 36 1 11.8627 2.2874 6.2516 37 1 10.1884 3.8873 4.5689 38 1 10.2643 4.5039 2.9008 39 1 7.8258 4.1298 2.6514 40 1 7.7498 3.5131 4.3194 41 1 8.1688 5.2169 4.0182 42 1 5.6690 3.9828 0.0011 43 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183924842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = -66.690326 kcal Electronic energy + Delta-G solvation = -22850.465180 eV Core-core repulsion = 19474.417310 eV Total energy + Delta-G solvation = -3376.047870 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.19539 -39.02969 -37.46614 -34.98599 -32.64509 -32.30068 -31.41508 -30.85540 -30.55359 -27.43497 -26.17824 -24.13354 -23.02120 -22.14757 -21.34075 -20.05602 -19.24117 -18.28995 -17.05473 -16.22834 -16.04064 -15.81439 -15.40342 -14.98053 -14.67955 -14.30837 -14.07205 -13.51922 -13.47262 -13.34701 -13.00338 -12.82131 -12.65254 -12.36991 -11.93077 -11.82662 -11.60502 -11.43159 -11.23535 -11.20284 -10.96456 -10.80596 -10.78754 -10.69010 -10.30827 -10.13086 -9.59740 -9.04229 -8.93203 -8.87440 -8.47626 -7.96607 -7.75899 -6.10540 -4.20058 1.46571 1.52284 3.12040 3.25796 3.31312 3.32209 3.49560 3.78609 4.26246 4.49135 4.68374 4.70001 4.89680 4.94392 4.95466 5.02346 5.20432 5.24495 5.39128 5.46365 5.52461 5.62129 5.71608 5.72698 5.77951 5.85950 6.13263 6.35071 6.42532 6.43486 6.49418 6.69979 6.76194 6.84900 7.07333 7.23895 7.41058 7.42630 7.51625 7.64555 7.77409 7.93641 8.21281 8.72960 8.81180 9.21834 9.47863 10.94640 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030967 B = 0.002923 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.979589 B = 9575.651130 C = 9683.755818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.121 3.879 5 C -0.207 4.207 6 C -0.066 4.066 7 C -0.088 4.088 8 C -0.104 4.104 9 C 0.500 3.500 10 O -0.541 6.541 11 N -0.712 5.712 12 C 0.271 3.729 13 H 0.048 0.952 14 C -0.534 4.534 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.882 5.882 18 Si 0.900 3.100 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 C -0.127 4.127 23 C -0.136 4.136 24 C -0.066 4.066 25 C -0.151 4.151 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.387 0.613 36 H 0.265 0.735 37 H 0.098 0.902 38 H 0.030 0.970 39 H 0.039 0.961 40 H 0.049 0.951 41 H 0.021 0.979 42 H 0.126 0.874 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.606 -2.256 -13.356 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.076 3.924 5 C -0.225 4.225 6 C -0.084 4.084 7 C -0.089 4.089 8 C -0.144 4.144 9 C 0.285 3.715 10 O -0.419 6.419 11 N -0.360 5.360 12 C 0.169 3.831 13 H 0.066 0.934 14 C -0.573 4.573 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.520 5.520 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.166 4.166 23 C -0.193 4.193 24 C -0.084 4.084 25 C -0.169 4.169 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.219 0.781 36 H 0.075 0.925 37 H 0.116 0.884 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.040 0.960 42 H 0.144 0.856 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -15.280 -2.175 -12.446 19.827 hybrid contribution 1.439 -0.474 -0.190 1.527 sum -13.841 -2.649 -12.636 18.928 Atomic orbital electron populations 1.21770 0.92928 1.02716 1.03439 1.22744 0.95674 0.82292 1.01394 1.86036 1.19386 1.29000 1.88990 1.18934 0.81917 0.94246 0.97313 1.21123 0.94264 0.97742 1.09400 1.20768 0.94194 0.96745 0.96711 1.19252 0.94255 0.93187 1.02185 1.20705 0.92805 1.04236 0.96691 1.20269 0.83324 0.77737 0.90202 1.90691 1.55263 1.50013 1.45896 1.46500 1.06555 1.71637 1.11309 1.18745 0.93907 0.93636 0.76800 0.93440 1.21209 0.95474 1.46514 0.94066 0.92189 1.24890 0.98489 0.94914 0.95411 1.69888 1.36642 1.46939 0.98513 0.86529 0.84442 0.79114 0.77126 1.20174 1.21158 1.20227 1.21929 0.93534 0.97498 1.03637 1.21830 0.98787 0.98180 1.00549 1.20786 0.92048 0.98637 0.96959 1.20323 0.95076 0.94624 1.06917 0.90495 0.91522 0.91633 0.92191 0.92028 0.85845 0.85977 0.88735 0.88742 0.78074 0.92536 0.88405 0.95122 0.94231 0.93229 0.95977 0.85570 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.16 0.38 -0.66 16 2 C 0.05 0.49 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.04 10.14 -19.41 -0.20 -4.24 16 4 C 0.12 1.66 6.69 -39.21 -0.26 1.40 16 5 C -0.21 -2.72 9.04 -39.43 -0.36 -3.08 16 6 C -0.07 -0.93 9.69 -39.61 -0.38 -1.31 16 7 C -0.09 -1.29 4.37 -104.60 -0.46 -1.75 16 8 C -0.10 -1.45 5.83 -29.03 -0.17 -1.62 16 9 C 0.50 9.62 6.39 -10.98 -0.07 9.55 16 10 O -0.54 -12.55 13.17 5.56 0.07 -12.48 16 11 N -0.71 -14.43 5.02 -54.93 -0.28 -14.70 16 12 C 0.27 6.79 2.24 -69.08 -0.15 6.64 16 13 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 14 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 17 N -0.88 -24.82 11.29 55.43 0.63 -24.19 16 18 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.13 -3.10 5.45 -26.73 -0.15 -3.25 16 23 C -0.14 -3.08 8.52 37.16 0.32 -2.76 16 24 C -0.07 -0.93 9.69 -39.61 -0.38 -1.31 16 25 C -0.15 -2.07 9.99 -39.43 -0.39 -2.46 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 30 H 0.06 0.55 7.65 -51.93 -0.40 0.15 16 31 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 32 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 35 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 40 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 43 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 352.43 15.07 5.31 5.31 Total: -1.00 -31.49 352.43 -8.40 -39.89 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.64 Total: 7.44 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -2.27 Total: -12.58 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.35 Total: -38.89 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.12 Total: -16.72 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.49 -8.40 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183924842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.802 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds