Wall clock time and date at job start Tue Mar 31 2020 06:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.46923 * 35.00124 * 12 11 9 14 14 C 1.50701 * 109.47302 * 155.00289 * 12 11 9 15 15 H 1.07997 * 119.99685 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99799 * 179.97438 * 14 12 11 17 17 N 1.31509 * 120.00170 * 0.02562 * 16 14 12 18 18 Si 1.86809 * 119.99690 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46744 * 60.00234 * 18 16 14 20 20 H 1.48496 * 109.46920 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47196 * 300.00241 * 18 16 14 22 22 C 1.53006 * 109.47314 * 275.00240 * 12 11 9 23 23 C 1.52999 * 109.46877 * 64.99930 * 22 12 11 24 24 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 25 25 C 1.38145 * 120.05942 * 359.97438 * 24 7 6 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 31 31 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 32 32 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 33 33 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 34 34 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 35 35 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 36 36 H 0.97008 * 119.99825 * 179.97438 * 17 16 14 37 37 H 1.08996 * 109.47075 * 184.99927 * 22 12 11 38 38 H 1.08997 * 109.46993 * 305.00385 * 22 12 11 39 39 H 1.09005 * 109.47065 * 299.99789 * 23 22 12 40 40 H 1.09001 * 109.47451 * 59.99649 * 23 22 12 41 41 H 1.08998 * 109.47246 * 180.02562 * 23 22 12 42 42 H 1.08009 * 119.97583 * 179.97438 * 24 7 6 43 43 H 1.08000 * 120.03441 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 1 9.2948 1.7163 3.6742 14 6 11.3329 1.9741 3.0962 15 1 11.8419 1.6910 2.1868 16 6 12.0079 1.9562 4.2983 17 7 11.3878 2.3004 5.4058 18 14 13.8028 1.4415 4.3540 19 1 14.6066 2.3568 3.5048 20 1 14.2930 1.5063 5.7542 21 1 13.9353 0.0520 3.8474 22 6 9.7476 3.8201 3.5742 23 6 8.2666 4.1970 3.6461 24 6 5.2549 2.9853 0.0010 25 6 3.8850 2.8070 0.0003 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.7884 -0.5724 0.0117 32 1 6.2281 -0.2456 0.0032 33 1 8.0671 1.2509 -0.5113 34 1 7.8338 3.0155 -0.5117 35 1 10.0263 2.4075 0.9329 36 1 11.8627 2.2874 6.2516 37 1 10.1884 3.8873 4.5689 38 1 10.2643 4.5039 2.9008 39 1 7.8258 4.1298 2.6514 40 1 7.7498 3.5131 4.3194 41 1 8.1688 5.2169 4.0182 42 1 5.6690 3.9828 0.0011 43 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183924842.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:24 Heat of formation + Delta-G solvation = -85.613387 kcal Electronic energy + Delta-G solvation = -22851.285745 eV Core-core repulsion = 19474.417310 eV Total energy + Delta-G solvation = -3376.868436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.24452 -40.48025 -38.54998 -36.81595 -34.25540 -33.62139 -32.76567 -32.03836 -31.69148 -29.14790 -27.57180 -25.04886 -24.83034 -23.20082 -22.50002 -21.63253 -20.95568 -19.23833 -18.82052 -17.40459 -17.17470 -17.06159 -17.00802 -16.39568 -16.16842 -15.74112 -15.32420 -14.69934 -14.58118 -14.45330 -14.39308 -14.20455 -13.89812 -13.49340 -13.36452 -13.16271 -12.93244 -12.76513 -12.75268 -12.63284 -12.45753 -12.43018 -12.16769 -11.99647 -11.64672 -11.60383 -11.55392 -11.03055 -10.60341 -10.45308 -9.90748 -9.54026 -9.01332 -8.13906 -6.31338 0.43577 0.46176 1.45524 1.47228 1.54941 1.99132 2.28019 2.38457 2.63417 3.04004 3.15587 3.82503 3.85446 3.97417 4.04967 4.14792 4.31744 4.35574 4.38521 4.46178 4.51292 4.55854 4.60050 4.72531 4.76999 4.80050 4.92672 4.93792 5.09569 5.12109 5.20018 5.28190 5.34228 5.41408 5.47167 5.59147 5.68838 5.70642 5.83505 5.86289 5.98980 6.20782 6.48531 6.78146 7.10853 7.36788 7.71812 8.91023 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030967 B = 0.002923 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.979589 B = 9575.651130 C = 9683.755818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.112 3.888 5 C -0.212 4.212 6 C -0.079 4.079 7 C -0.108 4.108 8 C -0.089 4.089 9 C 0.497 3.503 10 O -0.584 6.584 11 N -0.709 5.709 12 C 0.279 3.721 13 H -0.006 1.006 14 C -0.547 4.547 15 H 0.072 0.928 16 C 0.014 3.986 17 N -0.917 5.917 18 Si 0.969 3.031 19 H -0.264 1.264 20 H -0.288 1.288 21 H -0.271 1.271 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.075 4.075 25 C -0.165 4.165 26 H 0.100 0.900 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.404 0.596 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.047 0.953 40 H 0.021 0.979 41 H 0.043 0.957 42 H 0.139 0.861 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.300 -2.503 -15.375 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.248 6.248 4 C 0.067 3.933 5 C -0.231 4.231 6 C -0.097 4.097 7 C -0.108 4.108 8 C -0.129 4.129 9 C 0.285 3.715 10 O -0.465 6.465 11 N -0.358 5.358 12 C 0.175 3.825 13 H 0.012 0.988 14 C -0.585 4.585 15 H 0.091 0.909 16 C -0.186 4.186 17 N -0.555 5.555 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.214 1.214 21 H -0.197 1.197 22 C -0.159 4.159 23 C -0.179 4.179 24 C -0.093 4.093 25 C -0.183 4.183 26 H 0.118 0.882 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.239 0.761 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.157 0.843 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.975 -2.424 -14.517 20.997 hybrid contribution 1.224 -0.439 0.443 1.374 sum -13.751 -2.863 -14.075 19.884 Atomic orbital electron populations 1.21800 0.91265 1.04191 1.03210 1.23052 0.97044 0.80931 1.02050 1.86032 1.18774 1.31168 1.88803 1.19142 0.82619 0.94530 0.97029 1.21372 0.94083 0.98699 1.08912 1.21030 0.94846 0.97111 0.96688 1.19425 0.94641 0.93617 1.03146 1.20665 0.92448 1.06985 0.92785 1.21192 0.82267 0.75922 0.92167 1.90678 1.56192 1.51627 1.48009 1.46271 1.07660 1.72031 1.09885 1.18297 0.92811 0.92675 0.78693 0.98795 1.21585 0.96071 1.46236 0.94622 0.90941 1.25784 1.02888 0.94891 0.95062 1.70055 1.38368 1.48042 0.99049 0.85444 0.79166 0.78970 0.77026 1.18852 1.21396 1.19654 1.21776 0.94502 0.97514 1.02157 1.21660 0.97216 0.98570 1.00422 1.21020 0.92262 0.99254 0.96728 1.20578 0.95415 0.95295 1.07042 0.88155 0.92118 0.91481 0.90875 0.91967 0.83868 0.84972 0.86013 0.85696 0.76111 0.92709 0.91336 0.93991 0.93386 0.96013 0.93826 0.84305 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.04 0.74 5.46 71.98 0.39 1.13 16 3 O -0.33 -8.17 10.14 -92.39 -0.94 -9.10 16 4 C 0.11 3.00 6.69 22.51 0.15 3.15 16 5 C -0.21 -5.37 9.04 22.37 0.20 -5.17 16 6 C -0.08 -2.12 9.69 22.25 0.22 -1.90 16 7 C -0.11 -2.99 4.37 -19.85 -0.09 -3.07 16 8 C -0.09 -2.27 5.83 29.10 0.17 -2.10 16 9 C 0.50 18.71 6.39 87.66 0.56 19.27 16 10 O -0.58 -27.49 13.17 -3.03 -0.04 -27.53 16 11 N -0.71 -28.17 5.02 -446.08 -2.24 -30.41 16 12 C 0.28 14.22 2.24 44.25 0.10 14.32 16 13 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 14 C -0.55 -28.71 8.73 25.60 0.22 -28.49 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C 0.01 0.73 5.29 84.66 0.45 1.18 16 17 N -0.92 -52.83 11.29 21.45 0.24 -52.58 16 18 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 C -0.12 -5.96 5.45 30.60 0.17 -5.79 16 23 C -0.12 -5.53 8.52 71.98 0.61 -4.92 16 24 C -0.07 -2.01 9.69 22.25 0.22 -1.79 16 25 C -0.16 -4.40 9.99 22.37 0.22 -4.18 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.04 7.68 -2.39 -0.02 1.02 16 30 H 0.06 1.04 7.65 -2.39 -0.02 1.02 16 31 H 0.14 2.89 6.30 -2.91 -0.02 2.87 16 32 H 0.13 3.16 8.06 -2.91 -0.02 3.13 16 33 H 0.12 2.46 8.08 -2.39 -0.02 2.44 16 34 H 0.13 2.44 8.08 -2.39 -0.02 2.42 16 35 H 0.40 13.26 8.54 -92.71 -0.79 12.47 16 36 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 37 H 0.07 3.82 5.95 -2.39 -0.01 3.80 16 38 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 39 H 0.05 2.07 5.65 -2.38 -0.01 2.06 16 40 H 0.02 1.07 7.85 -2.39 -0.02 1.05 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -69.82 352.43 3.60 -66.23 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.21 Total: 28.86 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 4.33 Total: -19.43 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -2.00 Total: -83.00 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.98 Total: -36.63 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -69.82 3.60 -66.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183924842.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.387 kcal (2) G-P(sol) polarization free energy of solvation -69.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds