Wall clock time and date at job start Tue Mar 31 2020 06:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47636 * 2 1 4 4 C 1.42892 * 114.00303 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47556 * 29.99749 * 4 3 2 6 6 C 1.50702 * 109.47217 * 149.99900 * 4 3 2 7 7 O 1.21280 * 120.00216 * 4.99885 * 6 4 3 8 8 N 1.34782 * 119.99668 * 184.72343 * 6 4 3 9 9 C 1.46508 * 119.99493 * 180.27516 * 8 6 4 10 10 H 1.08994 * 109.47291 * 34.99652 * 9 8 6 11 11 C 1.50700 * 109.46732 * 155.00449 * 9 8 6 12 12 H 1.08001 * 120.00363 * 5.44526 * 11 9 8 13 13 C 1.37880 * 119.99660 * 185.45320 * 11 9 8 14 14 N 1.31514 * 120.00005 * 9.46202 * 13 11 9 15 15 Si 1.86802 * 119.99895 * 189.46672 * 13 11 9 16 16 H 1.48491 * 109.47177 * 84.98945 * 15 13 11 17 17 H 1.48503 * 109.46897 * 204.99222 * 15 13 11 18 18 H 1.48500 * 109.46953 * 324.99023 * 15 13 11 19 19 C 1.53001 * 109.46698 * 274.99771 * 9 8 6 20 20 C 1.52999 * 109.47261 * 64.90644 * 19 9 8 21 21 C 1.50702 * 109.47130 * 269.99444 * 4 3 2 22 22 C 1.38232 * 120.00007 * 324.73285 * 21 4 3 23 23 C 1.38237 * 119.99821 * 179.80992 * 22 21 4 24 24 C 1.38233 * 120.00273 * 0.39011 * 23 22 21 25 25 C 1.38237 * 119.99872 * 359.85791 * 24 23 22 26 26 C 1.38238 * 120.00044 * 359.95643 * 25 24 23 27 27 H 1.08997 * 109.47401 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46945 * 300.00332 * 1 2 3 29 29 H 1.09008 * 109.46724 * 60.00037 * 1 2 3 30 30 H 1.08998 * 109.47528 * 239.99234 * 2 1 3 31 31 H 1.09008 * 109.46724 * 119.99963 * 2 1 3 32 32 H 0.96991 * 120.00477 * 0.27763 * 8 6 4 33 33 H 0.96996 * 120.00032 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.46785 * 184.90292 * 19 9 8 35 35 H 1.08996 * 109.47690 * 304.90175 * 19 9 8 36 36 H 1.09001 * 109.46933 * 299.99557 * 20 19 9 37 37 H 1.08996 * 109.47152 * 59.99201 * 20 19 9 38 38 H 1.09000 * 109.47026 * 179.97438 * 20 19 9 39 39 H 1.07995 * 120.00327 * 359.97438 * 22 21 4 40 40 H 1.08006 * 119.99971 * 180.22719 * 23 22 21 41 41 H 1.07998 * 120.00376 * 179.83913 * 24 23 22 42 42 H 1.08001 * 120.00261 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00170 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5129 6 6 3.8349 2.7261 -0.7099 7 8 2.9867 3.5045 -1.0914 8 7 5.1391 2.9962 -0.9164 9 6 5.5321 4.2300 -1.6017 10 1 4.8433 5.0306 -1.3321 11 6 6.9307 4.6101 -1.1890 12 1 7.5054 3.9500 -0.5563 13 6 7.4767 5.8009 -1.6192 14 7 6.7218 6.6878 -2.2301 15 14 9.2887 6.1545 -1.3342 16 1 10.0887 5.5550 -2.4322 17 1 9.5081 7.6230 -1.3066 18 1 9.7097 5.5666 -0.0371 19 6 5.4893 4.0085 -3.1150 20 6 4.0470 3.7426 -3.5510 21 6 3.9311 1.5000 1.4216 22 6 3.1871 2.1347 2.3986 23 6 3.6441 2.1680 3.7028 24 6 4.8488 1.5735 4.0286 25 6 5.5952 0.9432 3.0506 26 6 5.1365 0.9066 1.7470 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 5.8175 2.3737 -0.6113 33 1 7.1060 7.5253 -2.5331 34 1 5.8644 4.8970 -3.6229 35 1 6.1111 3.1518 -3.3746 36 1 3.6719 2.8542 -3.0430 37 1 3.4252 4.5993 -3.2913 38 1 4.0165 3.5853 -4.6291 39 1 2.2477 2.6023 2.1435 40 1 3.0610 2.6607 4.4669 41 1 5.2070 1.6017 5.0470 42 1 6.5367 0.4791 3.3049 43 1 5.7198 0.4145 0.9829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183937175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:07 Heat of formation + Delta-G solvation = -67.441659 kcal Electronic energy + Delta-G solvation = -23924.623048 eV Core-core repulsion = 20548.542598 eV Total energy + Delta-G solvation = -3376.080450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00590 -38.42585 -37.39990 -34.92577 -32.77859 -32.10889 -31.01792 -30.73698 -30.46630 -27.43045 -26.07501 -23.04527 -22.96756 -22.34982 -21.71382 -20.28522 -19.31401 -17.42337 -17.12194 -16.61895 -15.82387 -15.60158 -15.17724 -14.94003 -14.53221 -14.37305 -14.19807 -13.67906 -13.29541 -13.09217 -12.74909 -12.70249 -12.46296 -12.31753 -11.92826 -11.78034 -11.46114 -11.34517 -11.25979 -11.00919 -10.99416 -10.86500 -10.75274 -10.33978 -10.19252 -9.75968 -9.67368 -9.13553 -9.08909 -8.81877 -8.47448 -8.43460 -7.81037 -6.12618 -4.17751 1.36263 1.50693 3.25943 3.28535 3.33227 3.35963 3.44077 3.84270 4.32429 4.55762 4.73038 4.92767 5.03082 5.06037 5.12966 5.20409 5.20873 5.31938 5.36488 5.51514 5.54945 5.62571 5.71453 5.87510 6.00385 6.07385 6.13015 6.36206 6.40780 6.50741 6.58790 6.61186 6.62028 6.99945 7.06309 7.13963 7.23495 7.34327 7.43391 7.64072 7.73160 7.87137 8.09265 8.68382 8.81909 9.15157 9.47880 10.95641 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.005384 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.542562 B = 5198.991483 C = 6634.339476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.348 6.348 4 C 0.112 3.888 5 H 0.086 0.914 6 C 0.509 3.491 7 O -0.524 6.524 8 N -0.702 5.702 9 C 0.271 3.729 10 H 0.056 0.944 11 C -0.535 4.535 12 H 0.061 0.939 13 C 0.070 3.930 14 N -0.879 5.879 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.120 4.120 20 C -0.139 4.139 21 C -0.107 4.107 22 C -0.085 4.085 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.108 4.108 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.386 0.614 33 H 0.264 0.736 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.023 0.977 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -14.708 8.051 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.266 6.266 4 C 0.050 3.950 5 H 0.103 0.897 6 C 0.292 3.708 7 O -0.400 6.400 8 N -0.352 5.352 9 C 0.170 3.830 10 H 0.074 0.926 11 C -0.574 4.574 12 H 0.079 0.921 13 C -0.134 4.134 14 N -0.516 5.516 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.159 4.159 20 C -0.196 4.196 21 C -0.108 4.108 22 C -0.103 4.103 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.126 4.126 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.218 0.782 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.248 -13.756 7.665 16.942 hybrid contribution 1.600 -0.286 0.284 1.650 sum -4.649 -14.042 7.949 16.793 Atomic orbital electron populations 1.21708 0.93606 1.01893 1.03380 1.22563 0.95774 0.84072 0.99904 1.88058 1.18159 1.25738 1.94655 1.20847 0.83235 0.98487 0.92394 0.89670 1.19826 0.84060 0.86779 0.80168 1.90691 1.50355 1.48268 1.50722 1.46377 1.05066 1.25240 1.58488 1.18802 0.95826 0.80822 0.87596 0.92597 1.21156 0.98723 1.05024 1.32471 0.92126 1.24872 0.98072 0.95385 0.95068 1.69985 1.35090 1.07618 1.38915 0.86548 0.85057 0.77383 0.78645 1.20435 1.21180 1.19919 1.21861 0.93913 1.00867 0.99257 1.21848 0.98795 1.01356 0.97604 1.20104 0.95938 0.99749 0.94983 1.21017 0.99965 0.97021 0.92343 1.21148 0.96638 0.99908 0.96418 1.21154 0.95053 0.98094 0.99301 1.21056 0.99706 1.00062 0.93012 1.20985 0.95320 0.99520 0.96802 0.91316 0.91852 0.91620 0.93402 0.93438 0.78171 0.92569 0.90182 0.94714 0.94079 0.92906 0.95748 0.85387 0.86114 0.86272 0.85996 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.05 0.64 6.46 37.16 0.24 0.88 16 3 O -0.35 -5.63 8.68 -55.09 -0.48 -6.11 16 4 C 0.11 1.79 2.73 -29.03 -0.08 1.71 16 5 H 0.09 1.13 7.70 -51.93 -0.40 0.73 16 6 C 0.51 10.48 5.73 -10.98 -0.06 10.41 16 7 O -0.52 -12.85 13.64 -14.30 -0.20 -13.05 16 8 N -0.70 -14.74 4.97 -54.93 -0.27 -15.01 16 9 C 0.27 6.85 2.11 -69.08 -0.15 6.71 16 10 H 0.06 1.67 7.52 -51.93 -0.39 1.28 16 11 C -0.54 -14.18 8.66 -34.44 -0.30 -14.47 16 12 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 13 C 0.07 1.89 5.16 -17.82 -0.09 1.79 16 14 N -0.88 -24.99 12.16 55.43 0.67 -24.32 16 15 Si 0.90 20.67 29.55 -169.99 -5.02 15.65 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C -0.12 -2.88 5.50 -26.73 -0.15 -3.03 16 20 C -0.14 -3.10 8.51 37.16 0.32 -2.79 16 21 C -0.11 -1.59 4.90 -104.62 -0.51 -2.10 16 22 C -0.09 -1.28 9.35 -39.58 -0.37 -1.65 16 23 C -0.12 -1.59 10.05 -39.58 -0.40 -1.98 16 24 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 25 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.11 -1.40 9.50 -39.58 -0.38 -1.78 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.39 7.09 8.35 -40.82 -0.34 6.75 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.08 2.11 6.80 -51.93 -0.35 1.76 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.04 0.90 5.65 -51.93 -0.29 0.60 16 37 H 0.05 1.27 7.84 -51.93 -0.41 0.87 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.13 2.00 7.64 -52.49 -0.40 1.60 16 40 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 41 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 42 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -31.51 356.07 -9.04 -40.55 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -6.77 Total: 7.99 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.34 Total: -11.06 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.40 Total: -39.33 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.67 Total: -19.16 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.51 -9.04 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.894 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds