Wall clock time and date at job start Tue Mar 31 2020 06:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47636 * 2 1 4 4 C 1.42892 * 114.00303 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47556 * 29.99749 * 4 3 2 6 6 C 1.50702 * 109.47217 * 149.99900 * 4 3 2 7 7 O 1.21280 * 120.00216 * 4.99885 * 6 4 3 8 8 N 1.34782 * 119.99668 * 184.72343 * 6 4 3 9 9 C 1.46508 * 119.99493 * 180.27516 * 8 6 4 10 10 H 1.08994 * 109.47291 * 34.99652 * 9 8 6 11 11 C 1.50700 * 109.46732 * 155.00449 * 9 8 6 12 12 H 1.08001 * 120.00363 * 5.44526 * 11 9 8 13 13 C 1.37880 * 119.99660 * 185.45320 * 11 9 8 14 14 N 1.31514 * 120.00005 * 9.46202 * 13 11 9 15 15 Si 1.86802 * 119.99895 * 189.46672 * 13 11 9 16 16 H 1.48491 * 109.47177 * 84.98945 * 15 13 11 17 17 H 1.48503 * 109.46897 * 204.99222 * 15 13 11 18 18 H 1.48500 * 109.46953 * 324.99023 * 15 13 11 19 19 C 1.53001 * 109.46698 * 274.99771 * 9 8 6 20 20 C 1.52999 * 109.47261 * 64.90644 * 19 9 8 21 21 C 1.50702 * 109.47130 * 269.99444 * 4 3 2 22 22 C 1.38232 * 120.00007 * 324.73285 * 21 4 3 23 23 C 1.38237 * 119.99821 * 179.80992 * 22 21 4 24 24 C 1.38233 * 120.00273 * 0.39011 * 23 22 21 25 25 C 1.38237 * 119.99872 * 359.85791 * 24 23 22 26 26 C 1.38238 * 120.00044 * 359.95643 * 25 24 23 27 27 H 1.08997 * 109.47401 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46945 * 300.00332 * 1 2 3 29 29 H 1.09008 * 109.46724 * 60.00037 * 1 2 3 30 30 H 1.08998 * 109.47528 * 239.99234 * 2 1 3 31 31 H 1.09008 * 109.46724 * 119.99963 * 2 1 3 32 32 H 0.96991 * 120.00477 * 0.27763 * 8 6 4 33 33 H 0.96996 * 120.00032 * 180.02562 * 14 13 11 34 34 H 1.09001 * 109.46785 * 184.90292 * 19 9 8 35 35 H 1.08996 * 109.47690 * 304.90175 * 19 9 8 36 36 H 1.09001 * 109.46933 * 299.99557 * 20 19 9 37 37 H 1.08996 * 109.47152 * 59.99201 * 20 19 9 38 38 H 1.09000 * 109.47026 * 179.97438 * 20 19 9 39 39 H 1.07995 * 120.00327 * 359.97438 * 22 21 4 40 40 H 1.08006 * 119.99971 * 180.22719 * 23 22 21 41 41 H 1.07998 * 120.00376 * 179.83913 * 24 23 22 42 42 H 1.08001 * 120.00261 * 179.97438 * 25 24 23 43 43 H 1.08000 * 120.00170 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5129 6 6 3.8349 2.7261 -0.7099 7 8 2.9867 3.5045 -1.0914 8 7 5.1391 2.9962 -0.9164 9 6 5.5321 4.2300 -1.6017 10 1 4.8433 5.0306 -1.3321 11 6 6.9307 4.6101 -1.1890 12 1 7.5054 3.9500 -0.5563 13 6 7.4767 5.8009 -1.6192 14 7 6.7218 6.6878 -2.2301 15 14 9.2887 6.1545 -1.3342 16 1 10.0887 5.5550 -2.4322 17 1 9.5081 7.6230 -1.3066 18 1 9.7097 5.5666 -0.0371 19 6 5.4893 4.0085 -3.1150 20 6 4.0470 3.7426 -3.5510 21 6 3.9311 1.5000 1.4216 22 6 3.1871 2.1347 2.3986 23 6 3.6441 2.1680 3.7028 24 6 4.8488 1.5735 4.0286 25 6 5.5952 0.9432 3.0506 26 6 5.1365 0.9066 1.7470 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 5.8175 2.3737 -0.6113 33 1 7.1060 7.5253 -2.5331 34 1 5.8644 4.8970 -3.6229 35 1 6.1111 3.1518 -3.3746 36 1 3.6719 2.8542 -3.0430 37 1 3.4252 4.5993 -3.2913 38 1 4.0165 3.5853 -4.6291 39 1 2.2477 2.6023 2.1435 40 1 3.0610 2.6607 4.4669 41 1 5.2070 1.6017 5.0470 42 1 6.5367 0.4791 3.3049 43 1 5.7198 0.4145 0.9829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183937175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:06 Heat of formation + Delta-G solvation = -85.959122 kcal Electronic energy + Delta-G solvation = -23925.426026 eV Core-core repulsion = 20548.542598 eV Total energy + Delta-G solvation = -3376.883428 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34260 -39.77741 -38.58602 -36.81401 -34.40204 -33.66472 -32.56949 -31.80914 -31.48181 -29.21287 -27.53934 -24.95456 -23.93304 -23.31520 -22.97455 -21.90526 -21.10657 -19.08451 -18.29526 -17.80379 -17.45685 -17.07512 -16.68828 -16.20080 -15.97467 -15.70512 -15.51315 -15.16139 -14.60066 -14.36453 -14.24725 -14.02140 -13.59291 -13.45329 -13.34079 -13.30636 -13.19594 -12.91371 -12.77542 -12.61123 -12.23354 -12.20672 -12.09099 -11.99539 -11.85832 -11.62051 -11.10202 -10.97266 -10.55065 -10.47619 -9.81057 -9.72254 -9.57479 -8.18266 -6.31463 0.34743 0.51379 1.45073 1.46138 1.55611 1.77385 2.07888 2.43825 2.80358 3.13371 3.21091 3.61154 3.88978 3.97772 4.12496 4.17091 4.21140 4.31085 4.38126 4.45414 4.48179 4.52231 4.62416 4.69031 4.71419 4.83694 5.01396 5.03980 5.04720 5.15822 5.22181 5.25889 5.40967 5.51237 5.54355 5.60239 5.61548 5.62017 5.73709 5.89545 6.06952 6.10150 6.18145 6.76488 6.96702 7.34048 7.55430 8.90569 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014463 B = 0.005384 C = 0.004219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.542562 B = 5198.991483 C = 6634.339476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.378 6.378 4 C 0.125 3.875 5 H 0.117 0.883 6 C 0.504 3.496 7 O -0.572 6.572 8 N -0.696 5.696 9 C 0.279 3.721 10 H -0.002 1.002 11 C -0.547 4.547 12 H 0.073 0.927 13 C 0.018 3.982 14 N -0.918 5.918 15 Si 0.967 3.033 16 H -0.268 1.268 17 H -0.290 1.290 18 H -0.263 1.263 19 C -0.112 4.112 20 C -0.125 4.125 21 C -0.124 4.124 22 C -0.110 4.110 23 C -0.131 4.131 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.112 4.112 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.264 0.736 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.022 0.978 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.527 -17.339 9.260 19.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.297 6.297 4 C 0.064 3.936 5 H 0.134 0.866 6 C 0.289 3.711 7 O -0.452 6.452 8 N -0.346 5.346 9 C 0.176 3.824 10 H 0.016 0.984 11 C -0.585 4.585 12 H 0.091 0.909 13 C -0.182 4.182 14 N -0.555 5.555 15 Si 0.791 3.209 16 H -0.194 1.194 17 H -0.215 1.215 18 H -0.188 1.188 19 C -0.151 4.151 20 C -0.182 4.182 21 C -0.124 4.124 22 C -0.128 4.128 23 C -0.149 4.149 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.130 4.130 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.069 0.931 39 H 0.124 0.876 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.170 0.830 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.264 -16.439 8.895 19.172 hybrid contribution 0.910 0.521 -0.027 1.049 sum -3.354 -15.918 8.868 18.528 Atomic orbital electron populations 1.21742 0.92634 1.03546 1.02432 1.22836 0.96619 0.82311 1.01159 1.88032 1.18247 1.28593 1.94832 1.20651 0.83707 0.96291 0.92973 0.86600 1.20712 0.83146 0.87959 0.79250 1.90666 1.51528 1.50398 1.52591 1.46107 1.06024 1.24203 1.58283 1.18385 0.94176 0.81137 0.88736 0.98403 1.21502 0.99129 1.05362 1.32494 0.90934 1.25768 1.02518 0.95178 0.94757 1.70143 1.37134 1.08101 1.40163 0.85441 0.79419 0.76883 0.79118 1.19372 1.21550 1.18750 1.21706 0.94997 1.00226 0.98168 1.21686 0.97149 1.00139 0.99257 1.20075 0.97102 1.01255 0.94016 1.21032 0.99835 0.98197 0.93786 1.21393 0.97521 1.00112 0.95887 1.21552 0.94231 0.96848 1.00869 1.21477 1.00625 0.99350 0.92453 1.21290 0.94491 0.99109 0.98124 0.88295 0.92490 0.92892 0.92035 0.92080 0.76319 0.92664 0.92929 0.92853 0.93701 0.95857 0.93082 0.87582 0.84558 0.83406 0.83043 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.28 71.98 0.74 -2.11 16 2 C 0.05 1.05 6.46 71.98 0.46 1.52 16 3 O -0.38 -12.33 8.68 -129.99 -1.13 -13.46 16 4 C 0.13 3.92 2.73 29.10 0.08 4.00 16 5 H 0.12 2.83 7.70 -2.39 -0.02 2.81 16 6 C 0.50 21.14 5.73 87.66 0.50 21.64 16 7 O -0.57 -29.51 13.64 15.96 0.22 -29.29 16 8 N -0.70 -29.30 4.97 -446.08 -2.22 -31.52 16 9 C 0.28 14.50 2.11 44.24 0.09 14.59 16 10 H 0.00 -0.13 7.52 -2.39 -0.02 -0.14 16 11 C -0.55 -29.01 8.66 25.60 0.22 -28.79 16 12 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 13 C 0.02 0.99 5.16 84.66 0.44 1.42 16 14 N -0.92 -53.69 12.16 21.45 0.26 -53.43 16 15 Si 0.97 42.07 29.55 68.60 2.03 44.10 16 16 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 17 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 19 C -0.11 -5.47 5.50 30.59 0.17 -5.30 16 20 C -0.12 -5.70 8.51 71.98 0.61 -5.09 16 21 C -0.12 -3.56 4.90 -19.86 -0.10 -3.65 16 22 C -0.11 -3.32 9.35 22.27 0.21 -3.11 16 23 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 24 C -0.12 -2.44 10.05 22.27 0.22 -2.21 16 25 C -0.12 -2.47 10.05 22.27 0.22 -2.25 16 26 C -0.11 -2.60 9.50 22.27 0.21 -2.38 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 1.20 8.09 -2.39 -0.02 1.18 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.40 14.21 8.35 -92.72 -0.77 13.44 16 33 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.05 2.85 6.80 -2.39 -0.02 2.84 16 35 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.04 1.98 5.65 -2.39 -0.01 1.97 16 37 H 0.02 1.16 7.84 -2.39 -0.02 1.14 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.11 3.55 7.64 -2.91 -0.02 3.53 16 40 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 43 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -71.73 356.07 3.69 -68.04 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: 0.22 Total: 30.29 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 4.31 Total: -14.73 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -1.96 Total: -84.94 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -0.91 Total: -42.75 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -71.73 3.69 -68.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.914 kcal (2) G-P(sol) polarization free energy of solvation -71.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds