Wall clock time and date at job start Tue Mar 31 2020 06:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47444 * 29.99805 * 4 3 2 6 6 C 1.50700 * 109.47377 * 270.00006 * 4 3 2 7 7 O 1.21287 * 119.99933 * 354.99978 * 6 4 3 8 8 N 1.34776 * 120.00542 * 175.00114 * 6 4 3 9 9 C 1.46493 * 120.00207 * 180.02562 * 8 6 4 10 10 H 1.08998 * 109.47221 * 324.99444 * 9 8 6 11 11 C 1.50702 * 109.47176 * 205.00002 * 9 8 6 12 12 H 1.08001 * 119.99948 * 0.02562 * 11 9 8 13 13 C 1.37876 * 120.00298 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00495 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 119.99831 * 0.02562 * 13 11 9 16 16 H 1.48496 * 109.47659 * 89.99467 * 15 13 11 17 17 H 1.48503 * 109.46969 * 209.99712 * 15 13 11 18 18 H 1.48505 * 109.46977 * 329.99171 * 15 13 11 19 19 C 1.53001 * 109.47543 * 85.00078 * 9 8 6 20 20 C 1.52999 * 109.46876 * 295.00151 * 19 9 8 21 21 C 1.50704 * 109.47338 * 150.00083 * 4 3 2 22 22 C 1.38235 * 119.99268 * 39.72516 * 21 4 3 23 23 C 1.38241 * 119.99624 * 179.78984 * 22 21 4 24 24 C 1.38241 * 119.99650 * 0.44085 * 23 22 21 25 25 C 1.38228 * 120.00136 * 359.81483 * 24 23 22 26 26 C 1.38231 * 120.00220 * 359.97437 * 25 24 23 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 0.97007 * 119.99870 * 0.02562 * 8 6 4 33 33 H 0.96994 * 120.00451 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46764 * 54.99788 * 19 9 8 35 35 H 1.08997 * 109.47639 * 175.00028 * 19 9 8 36 36 H 1.09003 * 109.47128 * 299.99415 * 20 19 9 37 37 H 1.09000 * 109.47562 * 59.99681 * 20 19 9 38 38 H 1.09003 * 109.47361 * 180.02562 * 20 19 9 39 39 H 1.07997 * 120.00747 * 359.97438 * 22 21 4 40 40 H 1.07996 * 120.00510 * 180.27137 * 23 22 21 41 41 H 1.08001 * 119.99766 * 179.83383 * 24 23 22 42 42 H 1.07999 * 120.00200 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.00446 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9322 1.4996 1.4200 7 8 3.1435 1.5288 2.3409 8 7 5.2571 1.5025 1.6673 9 6 5.7444 1.5403 3.0482 10 1 5.0734 2.1494 3.6538 11 6 7.1278 2.1375 3.0766 12 1 7.5968 2.4573 2.1578 13 6 7.7942 2.2766 4.2756 14 7 9.0017 2.7972 4.3003 15 14 6.9827 1.7241 5.8648 16 1 7.3220 0.3021 6.1256 17 1 7.4713 2.5637 6.9880 18 1 5.5095 1.8674 5.7441 19 6 5.7911 0.1186 3.6118 20 6 4.3703 -0.4422 3.6992 21 6 3.8341 2.7266 -0.7110 22 6 3.1027 3.8851 -0.5271 23 6 3.4752 5.0479 -1.1752 24 6 4.5738 5.0498 -2.0144 25 6 5.3020 3.8900 -2.2024 26 6 4.9321 2.7284 -1.5508 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 5.8880 1.4796 0.9307 33 1 9.4706 2.8947 5.1437 34 1 6.3911 -0.5125 2.9562 35 1 6.2365 0.1364 4.6065 36 1 3.7702 0.1890 4.3547 37 1 3.9248 -0.4600 2.7045 38 1 4.4034 -1.4548 4.1011 39 1 2.2420 3.8825 0.1253 40 1 2.9064 5.9541 -1.0282 41 1 4.8632 5.9576 -2.5229 42 1 6.1605 3.8916 -2.8576 43 1 5.5013 1.8224 -1.6973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183937189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:10 Heat of formation + Delta-G solvation = -59.175884 kcal Electronic energy + Delta-G solvation = -24068.654661 eV Core-core repulsion = 20692.932641 eV Total energy + Delta-G solvation = -3375.722019 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.10536 -38.57600 -37.42522 -35.18065 -32.93985 -32.21903 -31.35386 -30.82571 -30.45736 -27.80616 -26.29061 -23.10788 -22.68782 -22.30291 -21.86348 -20.62695 -19.57194 -17.69669 -17.05815 -16.63320 -16.20723 -15.74856 -15.31592 -14.98971 -14.58200 -14.34318 -14.26558 -13.85449 -13.35341 -13.26676 -12.98310 -12.65156 -12.55670 -12.36042 -12.18927 -11.91632 -11.86748 -11.69453 -11.27658 -11.13260 -10.99059 -10.91501 -10.79898 -10.63514 -10.18528 -9.92815 -9.52816 -9.22491 -9.10934 -8.81290 -8.74878 -8.46667 -8.04669 -6.20288 -4.22409 1.35127 1.51363 3.13131 3.23132 3.35417 3.40667 3.49490 3.78896 4.22591 4.32046 4.74640 4.89300 5.03825 5.07618 5.09919 5.13392 5.20571 5.31257 5.37312 5.38906 5.56288 5.62015 5.72096 5.90305 5.95366 5.98807 6.00204 6.07859 6.13381 6.15657 6.50724 6.59682 6.60245 6.63084 6.67933 6.82905 6.92877 7.04803 7.12678 7.28012 7.31518 7.52370 8.16080 8.53111 8.77135 8.93746 9.40669 10.91835 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.005940 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.653923 B = 4712.854676 C = 6250.714078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.353 6.353 4 C 0.115 3.885 5 H 0.087 0.913 6 C 0.486 3.514 7 O -0.532 6.532 8 N -0.695 5.695 9 C 0.243 3.757 10 H 0.049 0.951 11 C -0.533 4.533 12 H 0.080 0.920 13 C 0.079 3.921 14 N -0.892 5.892 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.294 1.294 18 H -0.260 1.260 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.083 4.083 22 C -0.083 4.083 23 C -0.123 4.123 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.106 4.106 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.393 0.607 33 H 0.267 0.733 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.031 0.969 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.124 0.876 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -2.894 -13.145 17.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.270 6.270 4 C 0.054 3.946 5 H 0.105 0.895 6 C 0.270 3.730 7 O -0.409 6.409 8 N -0.344 5.344 9 C 0.140 3.860 10 H 0.066 0.934 11 C -0.571 4.571 12 H 0.098 0.902 13 C -0.124 4.124 14 N -0.529 5.529 15 Si 0.711 3.289 16 H -0.203 1.203 17 H -0.221 1.221 18 H -0.185 1.185 19 C -0.177 4.177 20 C -0.200 4.200 21 C -0.084 4.084 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.124 4.124 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.226 0.774 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.752 -2.658 -12.346 17.251 hybrid contribution 0.349 -0.541 0.634 0.903 sum -11.403 -3.199 -11.712 16.657 Atomic orbital electron populations 1.21692 0.93602 1.02019 1.03118 1.22555 0.95785 0.83685 1.00051 1.87962 1.17935 1.26531 1.94598 1.20761 0.83537 0.96742 0.93583 0.89548 1.20823 0.83657 0.77810 0.90723 1.90675 1.55416 1.49593 1.45265 1.46146 1.05436 1.72214 1.10645 1.19144 0.95810 0.92386 0.78701 0.93371 1.21039 0.98377 1.41816 0.95845 0.90189 1.24819 0.94529 0.94277 0.98810 1.69862 1.12075 1.43970 1.26997 0.86926 0.80880 0.78022 0.83051 1.20260 1.22149 1.18485 1.22291 0.95507 0.99333 1.00591 1.21872 0.97909 0.98738 1.01505 1.19381 0.96830 0.93994 0.98163 1.21015 0.99136 0.91784 0.98183 1.21152 0.97522 0.97976 0.97435 1.21173 0.95575 0.98103 0.98517 1.21048 0.99769 0.92755 1.00142 1.20945 0.96256 0.98893 0.96312 0.92064 0.91266 0.91567 0.92853 0.93591 0.77360 0.92311 0.92299 0.92723 0.92830 0.93211 0.94947 0.85460 0.86036 0.86151 0.85816 0.85810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 37.16 0.38 -1.16 16 2 C 0.06 0.70 6.46 37.16 0.24 0.94 16 3 O -0.35 -5.44 8.84 -55.09 -0.49 -5.93 16 4 C 0.12 1.76 2.72 -29.03 -0.08 1.68 16 5 H 0.09 1.08 7.65 -51.93 -0.40 0.69 16 6 C 0.49 9.31 5.68 -10.99 -0.06 9.25 16 7 O -0.53 -11.91 13.65 -14.31 -0.20 -12.11 16 8 N -0.69 -13.91 4.97 -54.93 -0.27 -14.18 16 9 C 0.24 5.80 1.83 -69.08 -0.13 5.67 16 10 H 0.05 1.29 6.63 -51.93 -0.34 0.94 16 11 C -0.53 -14.44 9.31 -34.44 -0.32 -14.76 16 12 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 13 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 14 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 15 Si 0.88 21.89 24.41 -169.99 -4.15 17.74 16 16 H -0.28 -6.61 6.83 56.52 0.39 -6.23 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.26 -6.44 6.53 56.52 0.37 -6.07 16 19 C -0.14 -3.08 5.11 -26.73 -0.14 -3.21 16 20 C -0.14 -2.87 8.51 37.16 0.32 -2.56 16 21 C -0.08 -1.22 4.92 -104.62 -0.52 -1.74 16 22 C -0.08 -1.24 9.35 -39.58 -0.37 -1.61 16 23 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 24 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 26 C -0.11 -1.36 9.67 -39.59 -0.38 -1.74 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.39 7.05 8.54 -40.82 -0.35 6.70 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.28 3.22 -51.93 -0.17 1.11 16 36 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 37 H 0.05 0.97 5.65 -51.93 -0.29 0.68 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.13 1.98 7.77 -52.49 -0.41 1.57 16 40 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 LS Contribution 348.48 15.07 5.25 5.25 Total: -1.00 -32.12 348.48 -8.04 -40.16 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.61 Total: 7.44 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.34 Total: -12.67 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.50 Total: -39.89 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.68 Total: -18.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.15 Total: 17.74 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.12 -8.04 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.013 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds