Wall clock time and date at job start Tue Mar 31 2020 06:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.42899 * 113.99629 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47444 * 29.99805 * 4 3 2 6 6 C 1.50700 * 109.47377 * 270.00006 * 4 3 2 7 7 O 1.21287 * 119.99933 * 354.99978 * 6 4 3 8 8 N 1.34776 * 120.00542 * 175.00114 * 6 4 3 9 9 C 1.46493 * 120.00207 * 180.02562 * 8 6 4 10 10 H 1.08998 * 109.47221 * 324.99444 * 9 8 6 11 11 C 1.50702 * 109.47176 * 205.00002 * 9 8 6 12 12 H 1.08001 * 119.99948 * 0.02562 * 11 9 8 13 13 C 1.37876 * 120.00298 * 179.97438 * 11 9 8 14 14 N 1.31511 * 120.00495 * 179.97438 * 13 11 9 15 15 Si 1.86799 * 119.99831 * 0.02562 * 13 11 9 16 16 H 1.48496 * 109.47659 * 89.99467 * 15 13 11 17 17 H 1.48503 * 109.46969 * 209.99712 * 15 13 11 18 18 H 1.48505 * 109.46977 * 329.99171 * 15 13 11 19 19 C 1.53001 * 109.47543 * 85.00078 * 9 8 6 20 20 C 1.52999 * 109.46876 * 295.00151 * 19 9 8 21 21 C 1.50704 * 109.47338 * 150.00083 * 4 3 2 22 22 C 1.38235 * 119.99268 * 39.72516 * 21 4 3 23 23 C 1.38241 * 119.99624 * 179.78984 * 22 21 4 24 24 C 1.38241 * 119.99650 * 0.44085 * 23 22 21 25 25 C 1.38228 * 120.00136 * 359.81483 * 24 23 22 26 26 C 1.38231 * 120.00220 * 359.97437 * 25 24 23 27 27 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 32 32 H 0.97007 * 119.99870 * 0.02562 * 8 6 4 33 33 H 0.96994 * 120.00451 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.46764 * 54.99788 * 19 9 8 35 35 H 1.08997 * 109.47639 * 175.00028 * 19 9 8 36 36 H 1.09003 * 109.47128 * 299.99415 * 20 19 9 37 37 H 1.09000 * 109.47562 * 59.99681 * 20 19 9 38 38 H 1.09003 * 109.47361 * 180.02562 * 20 19 9 39 39 H 1.07997 * 120.00747 * 359.97438 * 22 21 4 40 40 H 1.07996 * 120.00510 * 180.27137 * 23 22 21 41 41 H 1.08001 * 119.99766 * 179.83383 * 24 23 22 42 42 H 1.07999 * 120.00200 * 180.02562 * 25 24 23 43 43 H 1.07995 * 120.00446 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9322 1.4996 1.4200 7 8 3.1435 1.5288 2.3409 8 7 5.2571 1.5025 1.6673 9 6 5.7444 1.5403 3.0482 10 1 5.0734 2.1494 3.6538 11 6 7.1278 2.1375 3.0766 12 1 7.5968 2.4573 2.1578 13 6 7.7942 2.2766 4.2756 14 7 9.0017 2.7972 4.3003 15 14 6.9827 1.7241 5.8648 16 1 7.3220 0.3021 6.1256 17 1 7.4713 2.5637 6.9880 18 1 5.5095 1.8674 5.7441 19 6 5.7911 0.1186 3.6118 20 6 4.3703 -0.4422 3.6992 21 6 3.8341 2.7266 -0.7110 22 6 3.1027 3.8851 -0.5271 23 6 3.4752 5.0479 -1.1752 24 6 4.5738 5.0498 -2.0144 25 6 5.3020 3.8900 -2.2024 26 6 4.9321 2.7284 -1.5508 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 5.8880 1.4796 0.9307 33 1 9.4706 2.8947 5.1437 34 1 6.3911 -0.5125 2.9562 35 1 6.2365 0.1364 4.6065 36 1 3.7702 0.1890 4.3547 37 1 3.9248 -0.4600 2.7045 38 1 4.4034 -1.4548 4.1011 39 1 2.2420 3.8825 0.1253 40 1 2.9064 5.9541 -1.0282 41 1 4.8632 5.9576 -2.5229 42 1 6.1605 3.8916 -2.8576 43 1 5.5013 1.8224 -1.6973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183937189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:09 Heat of formation + Delta-G solvation = -79.287929 kcal Electronic energy + Delta-G solvation = -24069.526785 eV Core-core repulsion = 20692.932641 eV Total energy + Delta-G solvation = -3376.594143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43632 -39.80044 -38.64095 -36.94779 -34.49096 -33.94459 -32.82302 -31.82617 -31.43277 -29.60972 -27.62963 -24.65791 -23.97659 -23.37587 -23.05245 -22.11939 -21.21921 -19.37669 -18.20758 -18.01768 -17.71772 -17.30642 -16.58567 -16.37090 -15.88342 -15.83582 -15.46659 -15.21535 -14.92284 -14.61509 -14.24715 -14.10485 -13.84809 -13.70013 -13.55915 -13.35313 -13.14226 -12.95358 -12.88590 -12.76517 -12.42647 -12.22679 -12.00516 -11.88022 -11.82977 -11.49454 -11.29972 -11.25339 -10.86801 -10.36848 -9.82110 -9.80322 -9.60664 -8.38829 -6.43772 0.33863 0.51712 1.24177 1.33147 1.42676 1.67210 2.21039 2.24664 2.65768 2.96842 3.03607 3.66130 3.84618 3.88206 4.12060 4.17123 4.18279 4.21278 4.29631 4.30766 4.36925 4.44363 4.47542 4.63110 4.68779 4.80640 4.82966 4.97616 5.02312 5.03413 5.09509 5.15859 5.19562 5.24629 5.39384 5.49062 5.54450 5.58158 5.62304 5.64001 6.03195 6.10136 6.17945 6.57613 6.85194 7.18683 7.42049 8.76340 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.005940 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.653923 B = 4712.854676 C = 6250.714078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 O -0.370 6.370 4 C 0.126 3.874 5 H 0.119 0.881 6 C 0.486 3.514 7 O -0.568 6.568 8 N -0.693 5.693 9 C 0.250 3.750 10 H 0.016 0.984 11 C -0.530 4.530 12 H 0.057 0.943 13 C 0.033 3.967 14 N -0.932 5.932 15 Si 0.933 3.067 16 H -0.257 1.257 17 H -0.293 1.293 18 H -0.265 1.265 19 C -0.137 4.137 20 C -0.133 4.133 21 C -0.102 4.102 22 C -0.109 4.109 23 C -0.132 4.132 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.111 4.111 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.047 0.953 30 H 0.038 0.962 31 H 0.073 0.927 32 H 0.404 0.596 33 H 0.270 0.730 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 -4.105 -14.689 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.030 4.030 3 O -0.288 6.288 4 C 0.065 3.935 5 H 0.136 0.864 6 C 0.272 3.728 7 O -0.448 6.448 8 N -0.343 5.343 9 C 0.145 3.855 10 H 0.034 0.966 11 C -0.568 4.568 12 H 0.075 0.925 13 C -0.167 4.167 14 N -0.571 5.571 15 Si 0.760 3.240 16 H -0.183 1.183 17 H -0.221 1.221 18 H -0.190 1.190 19 C -0.175 4.175 20 C -0.190 4.190 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.150 4.150 24 C -0.135 4.135 25 C -0.140 4.140 26 C -0.129 4.129 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.239 0.761 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.126 0.874 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.044 -3.885 -13.922 18.814 hybrid contribution 0.422 -0.088 1.015 1.103 sum -11.622 -3.973 -12.906 17.816 Atomic orbital electron populations 1.21708 0.92263 1.03508 1.02565 1.22812 0.97007 0.82558 1.00588 1.87973 1.18012 1.28415 1.94394 1.20698 0.83693 0.98458 0.90688 0.86383 1.21602 0.82702 0.76166 0.92363 1.90654 1.56143 1.50986 1.47026 1.45971 1.06325 1.72609 1.09435 1.18777 0.93106 0.92945 0.80625 0.96614 1.21251 0.99519 1.41147 0.94922 0.92488 1.25491 0.94928 0.94552 1.01760 1.69963 1.13495 1.45706 1.27918 0.86092 0.79580 0.78622 0.79663 1.18265 1.22061 1.18976 1.22201 0.97059 0.98211 1.00036 1.21756 0.95974 0.99765 1.01524 1.19466 0.97937 0.93543 0.99331 1.21057 0.99369 0.93131 0.99136 1.21406 0.98238 0.97931 0.97398 1.21565 0.94753 0.99359 0.97803 1.21472 1.00320 0.92329 0.99925 1.21268 0.95573 1.00365 0.95649 0.91358 0.88748 0.93348 0.94351 0.90843 0.76073 0.92082 0.90895 0.93812 0.94825 0.92849 0.92009 0.87385 0.84450 0.83416 0.83076 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 10.28 71.98 0.74 -2.07 16 2 C 0.05 1.10 6.46 71.98 0.46 1.56 16 3 O -0.37 -11.21 8.84 -129.99 -1.15 -12.36 16 4 C 0.13 3.70 2.72 29.10 0.08 3.78 16 5 H 0.12 2.66 7.65 -2.39 -0.02 2.64 16 6 C 0.49 18.51 5.68 87.66 0.50 19.01 16 7 O -0.57 -25.86 13.65 15.94 0.22 -25.64 16 8 N -0.69 -27.50 4.97 -446.10 -2.22 -29.72 16 9 C 0.25 11.98 1.83 44.25 0.08 12.06 16 10 H 0.02 0.87 6.63 -2.39 -0.02 0.86 16 11 C -0.53 -29.06 9.31 25.60 0.24 -28.82 16 12 H 0.06 3.32 7.98 -2.91 -0.02 3.29 16 13 C 0.03 1.85 5.45 84.65 0.46 2.31 16 14 N -0.93 -55.98 13.96 21.45 0.30 -55.68 16 15 Si 0.93 45.28 24.41 68.60 1.67 46.95 16 16 H -0.26 -11.63 6.83 99.48 0.68 -10.95 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 18 H -0.26 -12.96 6.53 99.48 0.65 -12.31 16 19 C -0.14 -5.90 5.11 30.59 0.16 -5.74 16 20 C -0.13 -5.15 8.51 71.98 0.61 -4.54 16 21 C -0.10 -2.91 4.92 -19.86 -0.10 -3.01 16 22 C -0.11 -3.26 9.35 22.27 0.21 -3.05 16 23 C -0.13 -3.29 10.05 22.27 0.22 -3.07 16 24 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 25 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 26 C -0.11 -2.59 9.67 22.27 0.22 -2.37 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.40 14.15 8.54 -92.70 -0.79 13.36 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 35 H 0.04 1.98 3.22 -2.39 -0.01 1.98 16 36 H 0.03 1.41 7.85 -2.39 -0.02 1.39 16 37 H 0.05 2.01 5.65 -2.39 -0.01 2.00 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.11 3.54 7.77 -2.91 -0.02 3.52 16 40 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 41 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 42 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.15 2.64 8.04 -2.91 -0.02 2.61 16 Total: -1.00 -70.66 348.48 3.28 -67.39 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.12 Total: 27.69 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.33 Total: -18.62 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.92 Total: -85.40 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.93 Total: -38.01 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.67 Total: 46.95 kcal Total: -70.66 3.28 -67.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.902 kcal (2) G-P(sol) polarization free energy of solvation -70.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds