Wall clock time and date at job start Tue Mar 31 2020 06:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46700 * 2 1 4 4 C 1.42901 * 113.99822 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47333 * 29.99850 * 4 3 2 6 6 C 1.50703 * 109.46877 * 269.99735 * 4 3 2 7 7 O 1.21274 * 120.00273 * 355.00290 * 6 4 3 8 8 N 1.34780 * 120.00005 * 174.99904 * 6 4 3 9 9 C 1.46491 * 120.00118 * 180.02562 * 8 6 4 10 10 H 1.08993 * 109.47421 * 34.99786 * 9 8 6 11 11 C 1.50702 * 109.47334 * 155.00324 * 9 8 6 12 12 H 1.08003 * 119.99843 * 5.44353 * 11 9 8 13 13 C 1.37876 * 120.00246 * 185.45719 * 11 9 8 14 14 N 1.31514 * 120.00183 * 9.47183 * 13 11 9 15 15 Si 1.86799 * 119.99992 * 189.47859 * 13 11 9 16 16 H 1.48499 * 109.47115 * 84.99255 * 15 13 11 17 17 H 1.48502 * 109.46985 * 204.99038 * 15 13 11 18 18 H 1.48493 * 109.47097 * 324.98611 * 15 13 11 19 19 C 1.53005 * 109.47120 * 275.00007 * 9 8 6 20 20 C 1.52999 * 109.46997 * 65.19677 * 19 9 8 21 21 C 1.50700 * 109.47369 * 149.99665 * 4 3 2 22 22 C 1.38242 * 119.99705 * 39.72879 * 21 4 3 23 23 C 1.38236 * 119.99497 * 179.78682 * 22 21 4 24 24 C 1.38227 * 120.00321 * 0.43937 * 23 22 21 25 25 C 1.38235 * 119.99887 * 359.81419 * 24 23 22 26 26 C 1.38234 * 120.00424 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47286 * 59.99855 * 1 2 3 28 28 H 1.09006 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46826 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.47331 * 119.99369 * 2 1 3 31 31 H 1.08993 * 109.47132 * 240.00343 * 2 1 3 32 32 H 0.97003 * 119.99619 * 359.97438 * 8 6 4 33 33 H 0.96999 * 120.00500 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.47149 * 185.20278 * 19 9 8 35 35 H 1.09003 * 109.46713 * 305.19483 * 19 9 8 36 36 H 1.09000 * 109.46681 * 60.00548 * 20 19 9 37 37 H 1.09005 * 109.46714 * 179.97438 * 20 19 9 38 38 H 1.08998 * 109.47170 * 300.00361 * 20 19 9 39 39 H 1.08000 * 119.99921 * 359.97438 * 22 21 4 40 40 H 1.08007 * 119.99546 * 180.26900 * 23 22 21 41 41 H 1.08006 * 120.00140 * 179.83058 * 24 23 22 42 42 H 1.08011 * 119.99910 * 180.02562 * 25 24 23 43 43 H 1.07993 * 120.00425 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9321 1.4998 1.4201 7 8 3.1434 1.5289 2.3409 8 7 5.2570 1.5027 1.6673 9 6 5.7443 1.5405 3.0483 10 1 5.0695 0.9713 3.6875 11 6 7.1240 0.9373 3.1109 12 1 7.6268 0.6438 2.2013 13 6 7.7442 0.7599 4.3295 14 7 7.0688 0.9400 5.4435 15 14 9.5438 0.2640 4.3981 16 1 10.3955 1.4766 4.3014 17 1 9.8169 -0.4317 5.6813 18 1 9.8496 -0.6473 3.2662 19 6 5.7999 2.9917 3.5299 20 6 4.3822 3.5639 3.5896 21 6 3.8341 2.7266 -0.7110 22 6 3.1027 3.8852 -0.5272 23 6 3.4753 5.0478 -1.1755 24 6 4.5737 5.0498 -2.0145 25 6 5.3020 3.8899 -2.2024 26 6 4.9321 2.7283 -1.5508 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 5.8878 1.4789 0.9308 33 1 7.5052 0.8155 6.3008 34 1 6.2486 3.0282 4.5225 35 1 6.4010 3.5814 2.8377 36 1 3.7813 2.9741 4.2819 37 1 4.4218 4.5976 3.9332 38 1 3.9336 3.5274 2.5969 39 1 2.2420 3.8826 0.1252 40 1 2.9064 5.9541 -1.0285 41 1 4.8632 5.9576 -2.5232 42 1 6.1606 3.8916 -2.8577 43 1 5.5013 1.8223 -1.6973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183937206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:13 Heat of formation + Delta-G solvation = -68.854863 kcal Electronic energy + Delta-G solvation = -24045.381154 eV Core-core repulsion = 20669.239422 eV Total energy + Delta-G solvation = -3376.141732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.01108 -38.47423 -37.29421 -34.89073 -32.85680 -32.12783 -31.02589 -30.74353 -30.41168 -27.38848 -26.06034 -23.11903 -22.89661 -22.27756 -21.75708 -20.27940 -19.31775 -17.55363 -17.01819 -16.57868 -15.89457 -15.55530 -15.19346 -14.86158 -14.48838 -14.38449 -14.12657 -13.72095 -13.32497 -13.12913 -12.70111 -12.62835 -12.49337 -12.23434 -11.92656 -11.75357 -11.44697 -11.30777 -11.22410 -11.03072 -10.99111 -10.80102 -10.74299 -10.36122 -10.19317 -10.03449 -9.63844 -9.10304 -9.06034 -8.83744 -8.48346 -8.36188 -7.81367 -6.14279 -4.19684 1.33822 1.48678 3.24699 3.29371 3.31562 3.32475 3.59519 3.82084 4.27387 4.43918 4.78443 4.92661 5.04633 5.11383 5.16382 5.18827 5.19041 5.39025 5.47735 5.51440 5.58716 5.64723 5.75210 5.97129 6.01140 6.11027 6.15764 6.38465 6.44263 6.48490 6.57140 6.61135 6.63904 7.02955 7.04449 7.15404 7.24648 7.35476 7.44030 7.63147 7.72755 7.85788 8.08433 8.68099 8.79932 9.14019 9.46217 10.93905 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.005198 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.090621 B = 5385.359323 C = 6286.545618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.112 3.888 5 H 0.086 0.914 6 C 0.485 3.515 7 O -0.530 6.530 8 N -0.703 5.703 9 C 0.270 3.730 10 H 0.055 0.945 11 C -0.537 4.537 12 H 0.060 0.940 13 C 0.070 3.930 14 N -0.879 5.879 15 Si 0.897 3.103 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.118 4.118 20 C -0.138 4.138 21 C -0.079 4.079 22 C -0.083 4.083 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.121 4.121 26 C -0.108 4.108 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.386 0.614 33 H 0.265 0.735 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.050 0.950 37 H 0.022 0.978 38 H 0.043 0.957 39 H 0.128 0.872 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 3.133 -15.094 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.051 3.949 5 H 0.103 0.897 6 C 0.268 3.732 7 O -0.407 6.407 8 N -0.352 5.352 9 C 0.168 3.832 10 H 0.073 0.927 11 C -0.575 4.575 12 H 0.078 0.922 13 C -0.134 4.134 14 N -0.516 5.516 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.157 4.157 20 C -0.195 4.195 21 C -0.080 4.080 22 C -0.101 4.101 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.139 4.139 26 C -0.126 4.126 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.218 0.782 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.146 0.854 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.260 3.289 -14.182 16.268 hybrid contribution 1.561 -0.463 -0.174 1.638 sum -5.699 2.826 -14.356 15.702 Atomic orbital electron populations 1.21692 0.93659 1.02003 1.03036 1.22548 0.95705 0.83662 1.00140 1.87938 1.17989 1.26587 1.94658 1.20818 0.83553 0.96486 0.94084 0.89671 1.20722 0.83889 0.78170 0.90407 1.90680 1.55380 1.49514 1.45162 1.46466 1.05216 1.72066 1.11437 1.18786 0.94699 0.92959 0.76743 0.92699 1.21168 1.00543 1.42693 0.93111 0.92160 1.24878 0.98231 0.94906 0.95402 1.69984 1.35840 1.48221 0.97563 0.86546 0.84969 0.78626 0.77469 1.20412 1.21183 1.19931 1.21830 0.94391 0.97498 1.01993 1.21838 0.98778 0.97904 1.01008 1.19427 0.96592 0.94103 0.97829 1.21032 0.99143 0.91747 0.98175 1.21148 0.97490 0.98003 0.97469 1.21154 0.95716 0.98081 0.98662 1.21040 0.99868 0.92784 1.00188 1.20965 0.96409 0.98845 0.96370 0.92169 0.91272 0.91551 0.92688 0.93669 0.78170 0.92560 0.90354 0.94781 0.93109 0.95883 0.93788 0.85422 0.86083 0.86239 0.85918 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 37.16 0.38 -1.27 16 2 C 0.06 0.76 6.46 37.16 0.24 1.00 16 3 O -0.35 -5.74 8.84 -55.09 -0.49 -6.23 16 4 C 0.11 1.79 2.72 -29.03 -0.08 1.71 16 5 H 0.09 1.15 7.65 -51.93 -0.40 0.76 16 6 C 0.48 9.79 5.69 -10.98 -0.06 9.73 16 7 O -0.53 -12.63 13.64 -14.30 -0.20 -12.82 16 8 N -0.70 -14.66 4.98 -54.94 -0.27 -14.93 16 9 C 0.27 6.80 2.10 -69.08 -0.15 6.66 16 10 H 0.06 1.62 7.52 -51.93 -0.39 1.23 16 11 C -0.54 -14.13 8.66 -34.44 -0.30 -14.43 16 12 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 13 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 14 N -0.88 -24.93 12.16 55.43 0.67 -24.25 16 15 Si 0.90 20.55 29.55 -169.99 -5.02 15.53 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.12 -2.88 5.50 -26.73 -0.15 -3.03 16 20 C -0.14 -3.15 8.52 37.16 0.32 -2.83 16 21 C -0.08 -1.16 4.92 -104.62 -0.52 -1.68 16 22 C -0.08 -1.22 9.35 -39.58 -0.37 -1.59 16 23 C -0.12 -1.54 10.05 -39.59 -0.40 -1.94 16 24 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 25 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.11 -1.35 9.67 -39.58 -0.38 -1.74 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.39 7.10 8.53 -40.82 -0.35 6.75 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.08 2.09 6.80 -51.93 -0.35 1.74 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 1.24 7.86 -51.93 -0.41 0.83 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.99 5.64 -51.93 -0.29 0.70 16 39 H 0.13 1.99 7.77 -52.49 -0.41 1.59 16 40 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 LS Contribution 356.63 15.07 5.37 5.37 Total: -1.00 -31.05 356.63 -9.06 -40.11 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.79 Total: 8.36 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.35 Total: -11.14 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.40 Total: -39.18 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.68 Total: -19.05 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.05 -9.06 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.745 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds