Wall clock time and date at job start Tue Mar 31 2020 06:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46700 * 2 1 4 4 C 1.42901 * 113.99822 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47333 * 29.99850 * 4 3 2 6 6 C 1.50703 * 109.46877 * 269.99735 * 4 3 2 7 7 O 1.21274 * 120.00273 * 355.00290 * 6 4 3 8 8 N 1.34780 * 120.00005 * 174.99904 * 6 4 3 9 9 C 1.46491 * 120.00118 * 180.02562 * 8 6 4 10 10 H 1.08993 * 109.47421 * 34.99786 * 9 8 6 11 11 C 1.50702 * 109.47334 * 155.00324 * 9 8 6 12 12 H 1.08003 * 119.99843 * 5.44353 * 11 9 8 13 13 C 1.37876 * 120.00246 * 185.45719 * 11 9 8 14 14 N 1.31514 * 120.00183 * 9.47183 * 13 11 9 15 15 Si 1.86799 * 119.99992 * 189.47859 * 13 11 9 16 16 H 1.48499 * 109.47115 * 84.99255 * 15 13 11 17 17 H 1.48502 * 109.46985 * 204.99038 * 15 13 11 18 18 H 1.48493 * 109.47097 * 324.98611 * 15 13 11 19 19 C 1.53005 * 109.47120 * 275.00007 * 9 8 6 20 20 C 1.52999 * 109.46997 * 65.19677 * 19 9 8 21 21 C 1.50700 * 109.47369 * 149.99665 * 4 3 2 22 22 C 1.38242 * 119.99705 * 39.72879 * 21 4 3 23 23 C 1.38236 * 119.99497 * 179.78682 * 22 21 4 24 24 C 1.38227 * 120.00321 * 0.43937 * 23 22 21 25 25 C 1.38235 * 119.99887 * 359.81419 * 24 23 22 26 26 C 1.38234 * 120.00424 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47286 * 59.99855 * 1 2 3 28 28 H 1.09006 * 109.46951 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46826 * 299.99953 * 1 2 3 30 30 H 1.09001 * 109.47331 * 119.99369 * 2 1 3 31 31 H 1.08993 * 109.47132 * 240.00343 * 2 1 3 32 32 H 0.97003 * 119.99619 * 359.97438 * 8 6 4 33 33 H 0.96999 * 120.00500 * 180.02562 * 14 13 11 34 34 H 1.08995 * 109.47149 * 185.20278 * 19 9 8 35 35 H 1.09003 * 109.46713 * 305.19483 * 19 9 8 36 36 H 1.09000 * 109.46681 * 60.00548 * 20 19 9 37 37 H 1.09005 * 109.46714 * 179.97438 * 20 19 9 38 38 H 1.08998 * 109.47170 * 300.00361 * 20 19 9 39 39 H 1.08000 * 119.99921 * 359.97438 * 22 21 4 40 40 H 1.08007 * 119.99546 * 180.26900 * 23 22 21 41 41 H 1.08006 * 120.00140 * 179.83058 * 24 23 22 42 42 H 1.08011 * 119.99910 * 180.02562 * 25 24 23 43 43 H 1.07993 * 120.00425 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9321 1.4998 1.4201 7 8 3.1434 1.5289 2.3409 8 7 5.2570 1.5027 1.6673 9 6 5.7443 1.5405 3.0483 10 1 5.0695 0.9713 3.6875 11 6 7.1240 0.9373 3.1109 12 1 7.6268 0.6438 2.2013 13 6 7.7442 0.7599 4.3295 14 7 7.0688 0.9400 5.4435 15 14 9.5438 0.2640 4.3981 16 1 10.3955 1.4766 4.3014 17 1 9.8169 -0.4317 5.6813 18 1 9.8496 -0.6473 3.2662 19 6 5.7999 2.9917 3.5299 20 6 4.3822 3.5639 3.5896 21 6 3.8341 2.7266 -0.7110 22 6 3.1027 3.8852 -0.5272 23 6 3.4753 5.0478 -1.1755 24 6 4.5737 5.0498 -2.0145 25 6 5.3020 3.8899 -2.2024 26 6 4.9321 2.7283 -1.5508 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 5.8878 1.4789 0.9308 33 1 7.5052 0.8155 6.3008 34 1 6.2486 3.0282 4.5225 35 1 6.4010 3.5814 2.8377 36 1 3.7813 2.9741 4.2819 37 1 4.4218 4.5976 3.9332 38 1 3.9336 3.5274 2.5969 39 1 2.2420 3.8826 0.1252 40 1 2.9064 5.9541 -1.0285 41 1 4.8632 5.9576 -2.5232 42 1 6.1606 3.8916 -2.8577 43 1 5.5013 1.8223 -1.6973 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183937206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:12 Heat of formation + Delta-G solvation = -86.890917 kcal Electronic energy + Delta-G solvation = -24046.163256 eV Core-core repulsion = 20669.239422 eV Total energy + Delta-G solvation = -3376.923834 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.37010 -39.71783 -38.60338 -36.77169 -34.42208 -33.71429 -32.66606 -31.79707 -31.43507 -29.18736 -27.51058 -24.97666 -24.00508 -23.31028 -22.94040 -21.91917 -21.10027 -19.20507 -18.15650 -17.77801 -17.67219 -16.98687 -16.66204 -16.25880 -15.87241 -15.78359 -15.46510 -15.00074 -14.61393 -14.60073 -14.21981 -13.98606 -13.59147 -13.50158 -13.32757 -13.26445 -13.11337 -12.91889 -12.84684 -12.62387 -12.23842 -12.20735 -12.10248 -11.99740 -11.81251 -11.65293 -11.35178 -11.10966 -10.54476 -10.34415 -9.78726 -9.65917 -9.59216 -8.19318 -6.32748 0.36067 0.53626 1.44596 1.46068 1.55317 1.76214 2.24665 2.45422 2.70020 3.08376 3.12471 3.67242 3.87463 3.96715 4.12466 4.18180 4.20745 4.32277 4.36895 4.42799 4.45140 4.50117 4.65358 4.69311 4.69889 4.82363 5.01403 5.03330 5.04722 5.18012 5.19542 5.22909 5.39181 5.49707 5.56677 5.60812 5.61452 5.64243 5.71717 5.87641 6.05988 6.08757 6.13572 6.75578 6.96703 7.33096 7.55138 8.89504 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014038 B = 0.005198 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.090621 B = 5385.359323 C = 6286.545618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.047 3.953 3 O -0.370 6.370 4 C 0.123 3.877 5 H 0.113 0.887 6 C 0.482 3.518 7 O -0.574 6.574 8 N -0.697 5.697 9 C 0.279 3.721 10 H 0.001 0.999 11 C -0.548 4.548 12 H 0.074 0.926 13 C 0.018 3.982 14 N -0.918 5.918 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.289 1.289 18 H -0.262 1.262 19 C -0.109 4.109 20 C -0.123 4.123 21 C -0.099 4.099 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.115 4.115 25 C -0.120 4.120 26 C -0.111 4.111 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.401 0.599 33 H 0.265 0.735 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.023 0.977 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 3.570 -18.108 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.029 4.029 3 O -0.288 6.288 4 C 0.062 3.938 5 H 0.130 0.870 6 C 0.268 3.732 7 O -0.455 6.455 8 N -0.348 5.348 9 C 0.175 3.825 10 H 0.019 0.981 11 C -0.586 4.586 12 H 0.092 0.908 13 C -0.183 4.183 14 N -0.556 5.556 15 Si 0.792 3.208 16 H -0.196 1.196 17 H -0.215 1.215 18 H -0.186 1.186 19 C -0.148 4.148 20 C -0.180 4.180 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.129 4.129 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.123 0.877 40 H 0.155 0.845 41 H 0.168 0.832 42 H 0.171 0.829 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.550 3.724 -17.247 18.497 hybrid contribution 0.962 -0.582 0.736 1.344 sum -4.588 3.142 -16.511 17.422 Atomic orbital electron populations 1.21704 0.92050 1.03518 1.02642 1.22784 0.97165 0.82676 1.00287 1.87949 1.18243 1.28199 1.94417 1.20750 0.83547 0.98609 0.90911 0.86964 1.21606 0.83050 0.76384 0.92192 1.90656 1.56342 1.51196 1.47256 1.46212 1.06075 1.72303 1.10173 1.18359 0.93358 0.92534 0.78240 0.98131 1.21521 1.00877 1.42506 0.93712 0.90827 1.25781 1.02644 0.94877 0.94963 1.70141 1.37760 1.49497 0.98179 0.85429 0.79301 0.78538 0.77517 1.19597 1.21492 1.18575 1.21675 0.95082 0.97425 1.00650 1.21664 0.97358 0.98608 1.00402 1.19422 0.98015 0.93226 0.99269 1.21020 0.99238 0.93131 0.99160 1.21387 0.98251 0.97765 0.97375 1.21560 0.94655 0.99395 0.97675 1.21463 1.00406 0.92104 0.99747 1.21256 0.95554 1.00415 0.95671 0.91029 0.88806 0.93415 0.95103 0.90790 0.76407 0.92647 0.93031 0.93529 0.95753 0.93541 0.93714 0.87745 0.84488 0.83250 0.82852 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 10.28 71.98 0.74 -2.40 16 2 C 0.05 1.27 6.46 71.98 0.46 1.73 16 3 O -0.37 -12.14 8.84 -129.99 -1.15 -13.28 16 4 C 0.12 3.88 2.72 29.10 0.08 3.96 16 5 H 0.11 2.85 7.65 -2.39 -0.02 2.84 16 6 C 0.48 19.93 5.69 87.66 0.50 20.43 16 7 O -0.57 -28.88 13.64 15.98 0.22 -28.66 16 8 N -0.70 -29.33 4.98 -446.11 -2.22 -31.55 16 9 C 0.28 14.46 2.10 44.25 0.09 14.55 16 10 H 0.00 0.05 7.52 -2.39 -0.02 0.03 16 11 C -0.55 -28.94 8.66 25.60 0.22 -28.72 16 12 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 13 C 0.02 0.96 5.16 84.65 0.44 1.40 16 14 N -0.92 -53.55 12.16 21.45 0.26 -53.29 16 15 Si 0.97 41.88 29.55 68.60 2.03 43.90 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 17 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 18 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 19 C -0.11 -5.46 5.50 30.60 0.17 -5.29 16 20 C -0.12 -5.78 8.52 71.98 0.61 -5.17 16 21 C -0.10 -2.79 4.92 -19.86 -0.10 -2.89 16 22 C -0.11 -3.13 9.35 22.27 0.21 -2.93 16 23 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 24 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 25 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 26 C -0.11 -2.46 9.67 22.27 0.22 -2.25 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 32 H 0.40 14.31 8.53 -92.71 -0.79 13.52 16 33 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 34 H 0.05 2.84 6.80 -2.39 -0.02 2.83 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.02 1.23 7.86 -2.39 -0.02 1.21 16 37 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.04 2.07 5.64 -2.39 -0.01 2.06 16 39 H 0.10 3.44 7.77 -2.91 -0.02 3.41 16 40 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 42 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 43 H 0.15 2.50 8.04 -2.91 -0.02 2.48 16 Total: -1.00 -70.47 356.63 3.65 -66.82 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.20 Total: 30.44 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.31 Total: -14.38 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -1.96 Total: -84.84 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.93 Total: -41.95 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -70.47 3.65 -66.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183937206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.071 kcal (2) G-P(sol) polarization free energy of solvation -70.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds