Wall clock time and date at job start Tue Mar 31 2020 06:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31512 * 120.00357 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99802 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46841 * 89.99881 * 9 7 5 11 11 H 1.48494 * 109.47129 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.47268 * 330.00196 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21277 * 120.00157 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99928 * 180.02562 * 14 13 3 17 17 O 1.42897 * 109.47149 * 180.02562 * 16 14 13 18 18 C 1.35908 * 117.00090 * 179.97438 * 17 16 14 19 19 C 1.38760 * 120.05396 * 359.73099 * 18 17 16 20 20 C 1.38120 * 119.93998 * 179.74284 * 19 18 17 21 21 C 1.38290 * 120.05846 * 0.50490 * 20 19 18 22 22 C 1.50699 * 119.94384 * 179.74594 * 21 20 19 23 23 C 1.38239 * 120.10966 * 359.76948 * 21 20 19 24 24 C 1.50697 * 119.97287 * 179.97438 * 23 21 20 25 25 C 1.38170 * 120.05811 * 359.97438 * 23 21 20 26 26 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 28 28 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 29 29 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 30 30 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 31 31 H 0.97001 * 120.00117 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 33 33 H 1.08999 * 109.47104 * 300.00397 * 16 14 13 34 34 H 1.09000 * 109.47712 * 60.00108 * 16 14 13 35 35 H 1.08001 * 120.02980 * 359.97104 * 19 18 17 36 36 H 1.08004 * 119.96756 * 180.25384 * 20 19 18 37 37 H 1.09002 * 109.47164 * 270.02344 * 22 21 20 38 38 H 1.09003 * 109.47365 * 30.02506 * 22 21 20 39 39 H 1.08998 * 109.47100 * 150.02255 * 22 21 20 40 40 H 1.08998 * 109.47310 * 270.02469 * 24 23 21 41 41 H 1.09003 * 109.46927 * 30.02164 * 24 23 21 42 42 H 1.09003 * 109.47432 * 150.01973 * 24 23 21 43 43 H 1.07999 * 120.03127 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8805 1.3362 9 14 3.0964 0.1102 2.5707 10 1 2.8744 -1.3259 2.2646 11 1 3.7942 0.2362 3.8754 12 1 1.7882 0.8095 2.6396 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4341 16 6 0.0361 3.3376 -2.6548 17 8 -1.2889 3.8577 -2.5298 18 6 -1.8039 4.5007 -3.6108 19 6 -1.0470 4.6333 -4.7662 20 6 -1.5747 5.2825 -5.8652 21 6 -2.8522 5.8094 -5.8112 22 6 -3.4231 6.5223 -7.0098 23 6 -3.6060 5.6836 -4.6593 24 6 -4.9976 6.2594 -4.6036 25 6 -3.0848 5.0304 -3.5590 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8771 0.4820 2.1128 32 1 2.2718 2.1231 -1.9978 33 1 0.7275 4.1528 -2.8679 34 1 0.0671 2.6129 -3.4685 35 1 -0.0477 4.2259 -4.8074 36 1 -0.9875 5.3824 -6.7662 37 1 -3.1792 7.5831 -6.9520 38 1 -2.9973 6.1006 -7.9203 39 1 -4.5060 6.3988 -7.0242 40 1 -4.9514 7.2872 -4.2437 41 1 -5.4377 6.2430 -5.6007 42 1 -5.6102 5.6644 -3.9262 43 1 -3.6740 4.9327 -2.6591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183949774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:54 Heat of formation + Delta-G solvation = -56.076343 kcal Electronic energy + Delta-G solvation = -22785.504290 eV Core-core repulsion = 19409.916677 eV Total energy + Delta-G solvation = -3375.587613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.44963 -39.25506 -37.80280 -35.31402 -32.84315 -32.51041 -32.18564 -31.63881 -28.99061 -27.66967 -26.77958 -26.03442 -22.76927 -22.39448 -21.36756 -20.36302 -19.68252 -18.06132 -17.40202 -16.41066 -16.29476 -15.67981 -15.56369 -15.34798 -14.75525 -14.41365 -14.22329 -14.10630 -13.61580 -13.39631 -13.11298 -13.03245 -12.81974 -12.55506 -12.26866 -12.17298 -12.11774 -11.87664 -11.71875 -11.42685 -11.12434 -10.98204 -10.90139 -10.80438 -10.65028 -9.95705 -9.59286 -9.28455 -9.16347 -8.93870 -8.79272 -8.16268 -8.11779 -6.24507 -4.27538 1.16944 1.29574 2.83344 3.08000 3.21744 3.34005 3.39169 3.57109 4.08265 4.28904 4.59865 4.62172 4.80491 4.90243 4.96070 5.07704 5.08392 5.13725 5.15333 5.24913 5.27152 5.42654 5.52257 5.56929 5.60796 5.80943 5.93565 5.94063 6.00336 6.15040 6.18726 6.25342 6.48411 6.61822 6.64737 6.68004 6.79966 6.92794 7.18012 7.24404 7.35713 7.45776 8.08257 8.44103 8.70801 8.83770 9.35834 10.87386 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.002920 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.562201 B = 9587.192905 C =10012.709880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.245 3.755 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.081 0.919 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.697 5.697 14 C 0.505 3.495 15 O -0.526 6.526 16 C 0.040 3.960 17 O -0.287 6.287 18 C 0.134 3.866 19 C -0.213 4.213 20 C -0.076 4.076 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.049 4.049 24 C -0.117 4.117 25 C -0.149 4.149 26 H 0.032 0.968 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.396 0.604 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.844 8.531 -15.893 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.347 5.347 14 C 0.288 3.712 15 O -0.403 6.403 16 C -0.039 4.039 17 O -0.199 6.199 18 C 0.088 3.912 19 C -0.232 4.232 20 C -0.094 4.094 21 C -0.133 4.133 22 C -0.167 4.167 23 C -0.049 4.049 24 C -0.174 4.174 25 C -0.168 4.168 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.229 0.771 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.317 8.415 -14.887 23.636 hybrid contribution 0.330 -0.589 0.218 0.709 sum -15.987 7.826 -14.668 23.065 Atomic orbital electron populations 1.21883 0.96870 0.99153 1.02299 1.22301 0.94391 0.99863 1.01234 1.19189 0.95713 0.88497 0.82450 0.93157 1.21023 0.88456 1.40011 1.07953 0.90121 1.24828 0.94877 0.95098 0.97652 1.69860 1.08691 1.44360 1.29864 0.86910 0.81004 0.79982 0.80914 1.20179 1.22105 1.18396 1.46040 1.14228 1.56070 1.18348 1.19828 0.83150 0.79857 0.88374 1.90715 1.51129 1.58572 1.39886 1.22606 0.83628 0.99196 0.98509 1.86182 1.29973 1.68822 1.34924 1.19076 0.93177 0.92718 0.86269 1.21275 1.01207 1.06639 0.94074 1.20784 0.94635 0.96262 0.97720 1.19632 0.94989 1.02707 0.95931 1.20766 1.01026 0.99751 0.95123 1.19511 0.96189 0.96789 0.92430 1.20873 0.92574 1.01029 1.02893 1.20288 0.94022 1.02658 0.99799 0.94853 0.92812 0.93007 0.92200 0.92647 0.92216 0.77075 0.89297 0.89439 0.85306 0.85850 0.91541 0.91900 0.91400 0.90895 0.90984 0.91356 0.85080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.14 -3.06 5.11 -26.73 -0.14 -3.20 16 3 C 0.24 5.70 1.83 -69.08 -0.13 5.57 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.96 16 5 C -0.54 -14.22 9.31 -34.44 -0.32 -14.54 16 6 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 9 Si 0.88 21.59 24.41 -169.99 -4.15 17.44 16 10 H -0.27 -6.52 6.83 56.52 0.39 -6.13 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.26 -6.31 6.53 56.52 0.37 -5.95 16 13 N -0.70 -13.26 5.02 -54.93 -0.28 -13.54 16 14 C 0.50 9.37 6.47 -10.99 -0.07 9.29 16 15 O -0.53 -11.86 13.64 -14.35 -0.20 -12.05 16 16 C 0.04 0.55 5.22 36.01 0.19 0.74 16 17 O -0.29 -4.58 9.67 -39.36 -0.38 -4.96 16 18 C 0.13 1.81 6.69 -39.22 -0.26 1.55 16 19 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 20 C -0.08 -0.76 9.69 -39.61 -0.38 -1.14 16 21 C -0.13 -1.29 5.88 -104.60 -0.62 -1.91 16 22 C -0.11 -0.75 9.60 36.01 0.35 -0.41 16 23 C -0.05 -0.51 5.88 -104.65 -0.62 -1.12 16 24 C -0.12 -0.87 9.60 36.00 0.35 -0.53 16 25 C -0.15 -1.86 9.64 -39.43 -0.38 -2.24 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 28 H 0.05 1.03 5.65 -51.93 -0.29 0.74 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.28 3.22 -51.93 -0.17 1.12 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.40 6.40 8.54 -40.82 -0.35 6.06 16 33 H 0.09 1.04 7.65 -51.93 -0.40 0.64 16 34 H 0.09 0.98 7.68 -51.93 -0.40 0.59 16 35 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 36 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 39 H 0.07 0.40 5.94 -51.93 -0.31 0.09 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.43 5.94 -51.93 -0.31 0.12 16 42 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 43 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -32.30 341.62 -7.53 -39.83 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.28 Total: 4.70 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -2.17 Total: -11.22 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.50 Total: -38.89 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.58 Total: -17.01 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.15 Total: 17.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.30 -7.53 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.249 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds