Wall clock time and date at job start Tue Mar 31 2020 06:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47102 * 2 1 4 4 H 1.08993 * 109.46955 * 55.00306 * 3 2 1 5 5 C 1.50698 * 109.47184 * 175.00464 * 3 2 1 6 6 H 1.07993 * 120.00472 * 119.99561 * 5 3 2 7 7 C 1.37884 * 119.99909 * 299.99693 * 5 3 2 8 8 N 1.31512 * 120.00357 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99802 * 359.97438 * 7 5 3 10 10 H 1.48505 * 109.46841 * 89.99881 * 9 7 5 11 11 H 1.48494 * 109.47129 * 210.00104 * 9 7 5 12 12 H 1.48501 * 109.47268 * 330.00196 * 9 7 5 13 13 N 1.46500 * 109.46998 * 295.00080 * 3 2 1 14 14 C 1.34773 * 119.99910 * 84.99768 * 13 3 2 15 15 O 1.21277 * 120.00157 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99928 * 180.02562 * 14 13 3 17 17 O 1.42897 * 109.47149 * 180.02562 * 16 14 13 18 18 C 1.35908 * 117.00090 * 179.97438 * 17 16 14 19 19 C 1.38760 * 120.05396 * 359.73099 * 18 17 16 20 20 C 1.38120 * 119.93998 * 179.74284 * 19 18 17 21 21 C 1.38290 * 120.05846 * 0.50490 * 20 19 18 22 22 C 1.50699 * 119.94384 * 179.74594 * 21 20 19 23 23 C 1.38239 * 120.10966 * 359.76948 * 21 20 19 24 24 C 1.50697 * 119.97287 * 179.97438 * 23 21 20 25 25 C 1.38170 * 120.05811 * 359.97438 * 23 21 20 26 26 H 1.09002 * 109.46922 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46822 * 299.99923 * 1 2 3 28 28 H 1.08997 * 109.47474 * 60.00037 * 1 2 3 29 29 H 1.09000 * 109.47145 * 239.99763 * 2 1 3 30 30 H 1.09007 * 109.47521 * 119.99769 * 2 1 3 31 31 H 0.97001 * 120.00117 * 180.02562 * 8 7 5 32 32 H 0.97003 * 119.99995 * 265.00643 * 13 3 2 33 33 H 1.08999 * 109.47104 * 300.00397 * 16 14 13 34 34 H 1.09000 * 109.47712 * 60.00108 * 16 14 13 35 35 H 1.08001 * 120.02980 * 359.97104 * 19 18 17 36 36 H 1.08004 * 119.96756 * 180.25384 * 20 19 18 37 37 H 1.09002 * 109.47164 * 270.02344 * 22 21 20 38 38 H 1.09003 * 109.47365 * 30.02506 * 22 21 20 39 39 H 1.08998 * 109.47100 * 150.02255 * 22 21 20 40 40 H 1.08998 * 109.47310 * 270.02469 * 24 23 21 41 41 H 1.09003 * 109.46927 * 30.02164 * 24 23 21 42 42 H 1.09003 * 109.47432 * 150.01973 * 24 23 21 43 43 H 1.07999 * 120.03127 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1237 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8805 1.3362 9 14 3.0964 0.1102 2.5707 10 1 2.8744 -1.3259 2.2646 11 1 3.7942 0.2362 3.8754 12 1 1.7882 0.8095 2.6396 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6326 -0.4341 16 6 0.0361 3.3376 -2.6548 17 8 -1.2889 3.8577 -2.5298 18 6 -1.8039 4.5007 -3.6108 19 6 -1.0470 4.6333 -4.7662 20 6 -1.5747 5.2825 -5.8652 21 6 -2.8522 5.8094 -5.8112 22 6 -3.4231 6.5223 -7.0098 23 6 -3.6060 5.6836 -4.6593 24 6 -4.9976 6.2594 -4.6036 25 6 -3.0848 5.0304 -3.5590 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8771 0.4820 2.1128 32 1 2.2718 2.1231 -1.9978 33 1 0.7275 4.1528 -2.8679 34 1 0.0671 2.6129 -3.4685 35 1 -0.0477 4.2259 -4.8074 36 1 -0.9875 5.3824 -6.7662 37 1 -3.1792 7.5831 -6.9520 38 1 -2.9973 6.1006 -7.9203 39 1 -4.5060 6.3988 -7.0242 40 1 -4.9514 7.2872 -4.2437 41 1 -5.4377 6.2430 -5.6007 42 1 -5.6102 5.6644 -3.9262 43 1 -3.6740 4.9327 -2.6591 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183949774.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:53 Heat of formation + Delta-G solvation = -76.439936 kcal Electronic energy + Delta-G solvation = -22786.387322 eV Core-core repulsion = 19409.916677 eV Total energy + Delta-G solvation = -3376.470645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.48540 -40.60137 -38.83839 -37.06570 -34.44691 -33.61888 -33.44563 -32.86662 -30.26391 -29.09180 -27.84894 -26.78264 -24.62157 -23.28573 -22.72413 -21.55527 -21.21427 -19.36125 -18.80156 -17.92413 -17.53749 -17.17541 -16.89743 -16.28745 -16.01306 -15.88671 -15.22708 -15.10947 -14.91052 -14.82240 -14.29072 -14.13590 -13.86745 -13.70950 -13.66764 -13.54863 -13.13172 -13.00997 -12.84527 -12.79178 -12.74389 -12.42284 -12.08287 -11.88124 -11.73900 -11.69989 -11.40269 -11.26605 -10.88355 -10.74039 -9.85077 -9.73959 -8.98108 -8.39583 -6.44997 0.36673 0.45712 1.25683 1.34555 1.43959 1.62433 1.67118 2.24679 2.75759 2.80675 2.96336 3.67272 3.89382 3.92196 4.01380 4.10989 4.13148 4.21426 4.29365 4.30148 4.36095 4.42262 4.45960 4.75323 4.80581 4.81910 4.85578 4.96934 4.98432 5.03989 5.08918 5.18905 5.21982 5.23885 5.37605 5.40891 5.45493 5.48975 5.59392 5.74286 5.89208 6.11741 6.40699 6.56833 6.80382 7.17303 7.38217 8.75342 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.036423 B = 0.002920 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.562201 B = 9587.192905 C =10012.709880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.138 4.138 3 C 0.250 3.750 4 H 0.021 0.979 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.258 1.258 11 H -0.294 1.294 12 H -0.263 1.263 13 N -0.693 5.693 14 C 0.503 3.497 15 O -0.570 6.570 16 C 0.049 3.951 17 O -0.320 6.320 18 C 0.105 3.895 19 C -0.217 4.217 20 C -0.081 4.081 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.056 4.056 24 C -0.117 4.117 25 C -0.172 4.172 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.270 0.730 32 H 0.411 0.589 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.214 8.763 -18.310 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.146 3.854 4 H 0.039 0.961 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.760 3.240 10 H -0.184 1.184 11 H -0.221 1.221 12 H -0.187 1.187 13 N -0.344 5.344 14 C 0.289 3.711 15 O -0.449 6.449 16 C -0.029 4.029 17 O -0.233 6.233 18 C 0.060 3.940 19 C -0.236 4.236 20 C -0.098 4.098 21 C -0.134 4.134 22 C -0.166 4.166 23 C -0.056 4.056 24 C -0.173 4.173 25 C -0.190 4.190 26 H 0.079 0.921 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.247 0.753 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.691 8.652 -17.350 26.246 hybrid contribution 0.724 -0.549 0.865 1.255 sum -16.967 8.104 -16.485 25.006 Atomic orbital electron populations 1.21767 0.95426 1.00590 1.01425 1.22219 0.95591 0.98441 1.01336 1.18815 0.93386 0.89660 0.83562 0.96112 1.21258 0.90092 1.38608 1.07070 0.92085 1.25508 0.95681 0.95902 0.99756 1.69961 1.10176 1.46059 1.30874 0.86088 0.79279 0.80063 0.78520 1.18404 1.22106 1.18750 1.45813 1.15119 1.56015 1.17455 1.20581 0.82087 0.78900 0.89552 1.90696 1.52265 1.60060 1.41912 1.22549 0.83817 1.00447 0.96059 1.86112 1.30679 1.69830 1.36680 1.19313 0.93986 0.94114 0.86588 1.21504 1.01787 1.06684 0.93616 1.21171 0.95041 0.95433 0.98191 1.20077 0.94903 1.01883 0.96564 1.20837 1.01705 0.99923 0.94112 1.19858 0.97521 0.96191 0.92002 1.20940 0.91002 1.01233 1.04113 1.20476 0.94181 1.03862 1.00506 0.92146 0.94735 0.92899 0.90807 0.93728 0.92037 0.75302 0.86720 0.86179 0.83619 0.83244 0.90604 0.90672 0.90279 0.90031 0.89134 0.91344 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.51 71.98 0.61 -4.67 16 2 C -0.14 -5.88 5.11 30.60 0.16 -5.72 16 3 C 0.25 11.66 1.83 44.25 0.08 11.75 16 4 H 0.02 1.11 6.63 -2.39 -0.02 1.09 16 5 C -0.53 -28.47 9.31 25.60 0.24 -28.23 16 6 H 0.06 3.43 7.98 -2.91 -0.02 3.41 16 7 C 0.03 1.77 5.45 84.66 0.46 2.23 16 8 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 9 Si 0.93 44.74 24.41 68.60 1.67 46.41 16 10 H -0.26 -11.62 6.83 99.48 0.68 -10.94 16 11 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.26 -12.64 6.53 99.48 0.65 -11.99 16 13 N -0.69 -25.93 5.02 -446.11 -2.24 -28.17 16 14 C 0.50 18.41 6.47 87.66 0.57 18.97 16 15 O -0.57 -26.00 13.64 16.02 0.22 -25.78 16 16 C 0.05 1.30 5.22 71.24 0.37 1.67 16 17 O -0.32 -10.14 9.67 -73.48 -0.71 -10.85 16 18 C 0.10 2.79 6.69 22.51 0.15 2.94 16 19 C -0.22 -4.52 9.04 22.37 0.20 -4.32 16 20 C -0.08 -1.40 9.69 22.25 0.22 -1.18 16 21 C -0.13 -2.28 5.88 -19.85 -0.12 -2.40 16 22 C -0.11 -1.12 9.60 71.24 0.68 -0.44 16 23 C -0.06 -1.08 5.88 -19.88 -0.12 -1.20 16 24 C -0.12 -1.53 9.60 71.23 0.68 -0.84 16 25 C -0.17 -4.29 9.64 22.37 0.22 -4.07 16 26 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.03 1.46 7.85 -2.38 -0.02 1.44 16 28 H 0.05 2.04 5.65 -2.39 -0.01 2.03 16 29 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 30 H 0.04 2.00 3.22 -2.38 -0.01 2.00 16 31 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.41 12.80 8.54 -92.71 -0.79 12.01 16 33 H 0.12 2.42 7.65 -2.39 -0.02 2.40 16 34 H 0.12 2.37 7.68 -2.39 -0.02 2.35 16 35 H 0.15 2.38 6.30 -2.91 -0.02 2.36 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 39 H 0.08 0.64 5.94 -2.39 -0.01 0.62 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 41 H 0.09 0.83 5.94 -2.39 -0.01 0.82 16 42 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 43 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -71.40 341.62 3.80 -67.60 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.15 Total: 21.41 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.41 Total: -15.51 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -1.94 Total: -83.28 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.49 Total: -36.63 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.41 kcal Total: -71.40 3.80 -67.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949774.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.842 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds