Wall clock time and date at job start Tue Mar 31 2020 06:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47300 * 2 1 4 4 H 1.08999 * 109.46781 * 304.90152 * 3 2 1 5 5 C 1.50702 * 109.46713 * 184.90196 * 3 2 1 6 6 H 1.07998 * 120.00000 * 245.44692 * 5 3 2 7 7 C 1.37872 * 120.00375 * 65.45568 * 5 3 2 8 8 N 1.31520 * 120.00010 * 9.46447 * 7 5 3 9 9 Si 1.86802 * 120.00418 * 189.46910 * 7 5 3 10 10 H 1.48493 * 109.47331 * 84.98547 * 9 7 5 11 11 H 1.48496 * 109.47037 * 204.99423 * 9 7 5 12 12 H 1.48503 * 109.46748 * 324.98767 * 9 7 5 13 13 N 1.46492 * 109.47363 * 64.90341 * 3 2 1 14 14 C 1.34781 * 119.99706 * 275.00332 * 13 3 2 15 15 O 1.21276 * 119.99985 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99700 * 180.02562 * 14 13 3 17 17 O 1.42901 * 109.46603 * 179.97438 * 16 14 13 18 18 C 1.35899 * 116.99588 * 179.97438 * 17 16 14 19 19 C 1.38756 * 120.05769 * 359.72271 * 18 17 16 20 20 C 1.38128 * 119.94357 * 179.79249 * 19 18 17 21 21 C 1.38288 * 120.05205 * 0.48396 * 20 19 18 22 22 C 1.50709 * 119.93636 * 179.72762 * 21 20 19 23 23 C 1.38232 * 120.11707 * 359.74639 * 21 20 19 24 24 C 1.50702 * 119.97389 * 179.97438 * 23 21 20 25 25 C 1.38164 * 120.05699 * 0.02562 * 23 21 20 26 26 H 1.08999 * 109.47408 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46732 * 300.00334 * 1 2 3 28 28 H 1.09005 * 109.46919 * 59.99688 * 1 2 3 29 29 H 1.09001 * 109.46732 * 239.99666 * 2 1 3 30 30 H 1.09005 * 109.46919 * 120.00312 * 2 1 3 31 31 H 0.96998 * 120.00037 * 180.02562 * 8 7 5 32 32 H 0.96995 * 120.00354 * 94.99590 * 13 3 2 33 33 H 1.08994 * 109.47240 * 59.99667 * 16 14 13 34 34 H 1.08994 * 109.46874 * 299.99281 * 16 14 13 35 35 H 1.07999 * 120.02659 * 0.02562 * 19 18 17 36 36 H 1.07999 * 119.96762 * 180.21527 * 20 19 18 37 37 H 1.09001 * 109.46555 * 270.02001 * 22 21 20 38 38 H 1.08990 * 109.47454 * 30.02180 * 22 21 20 39 39 H 1.09001 * 109.46610 * 150.02355 * 22 21 20 40 40 H 1.08994 * 109.47226 * 270.02059 * 24 23 21 41 41 H 1.08995 * 109.47278 * 30.02389 * 24 23 21 42 42 H 1.09003 * 109.47235 * 150.02378 * 24 23 21 43 43 H 1.08004 * 120.03426 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5422 1.4441 -0.1214 6 1 4.1494 1.8089 0.6938 7 6 4.1412 0.9799 -1.2732 8 7 3.4097 0.7114 -2.3326 9 14 5.9920 0.7324 -1.3290 10 1 6.3290 -0.6069 -0.7835 11 1 6.4618 0.8272 -2.7345 12 1 6.6563 1.7806 -0.5134 13 7 1.6506 2.0982 1.2507 14 6 0.4330 2.6652 1.3636 15 8 -0.3398 2.6329 0.4295 16 6 0.0326 3.3402 2.6501 17 8 -1.2924 3.8601 2.5227 18 6 -1.8090 4.5037 3.6024 19 6 -1.0583 4.6272 4.7628 20 6 -1.5841 5.2855 5.8574 21 6 -2.8613 5.8125 5.8008 22 6 -3.4347 6.5249 6.9987 23 6 -3.6131 5.6867 4.6476 24 6 -5.0049 6.2617 4.5897 25 6 -3.0901 5.0332 3.5484 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8311 0.3845 -3.1428 32 1 2.2688 2.1242 1.9977 33 1 0.7236 4.1558 2.8629 34 1 0.0625 2.6167 3.4647 35 1 -0.0623 4.2122 4.8088 36 1 -0.9987 5.3848 6.7596 37 1 -3.9548 5.8074 7.6335 38 1 -2.6285 6.9924 7.5638 39 1 -4.1358 7.2900 6.6651 40 1 -5.7222 5.5113 4.9220 41 1 -5.0648 7.1346 5.2398 42 1 -5.2345 6.5552 3.5653 43 1 -3.6779 4.9347 2.6477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183949794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:57 Heat of formation + Delta-G solvation = -65.654424 kcal Electronic energy + Delta-G solvation = -22689.915626 eV Core-core repulsion = 19313.912676 eV Total energy + Delta-G solvation = -3376.002950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38084 -39.07693 -37.69419 -35.02712 -32.79978 -32.45613 -32.12934 -31.17826 -28.85268 -27.42207 -26.48975 -25.95823 -23.06217 -22.34954 -21.10951 -20.14406 -19.43383 -17.96478 -17.30355 -16.20391 -16.15717 -15.53579 -15.35643 -15.18589 -14.54056 -14.46075 -14.14884 -14.03819 -13.51667 -13.30736 -13.00396 -12.82148 -12.71895 -12.38785 -12.21598 -12.13290 -11.79058 -11.46921 -11.39853 -11.36077 -11.05068 -10.90063 -10.81923 -10.72924 -10.37776 -10.24078 -9.71796 -9.14980 -9.01889 -8.89834 -8.51267 -8.08162 -7.91935 -6.17626 -4.23552 1.20990 1.33924 2.93902 3.23013 3.25622 3.30453 3.31683 3.61351 4.18189 4.37033 4.63488 4.66960 4.84722 4.95814 5.00113 5.13104 5.15222 5.20097 5.23205 5.30076 5.39208 5.45992 5.56253 5.60700 5.63720 5.84693 5.97595 6.22865 6.29827 6.32864 6.36961 6.52161 6.57241 6.69782 6.96201 7.13190 7.27636 7.35239 7.38878 7.58207 7.67321 7.80100 8.03109 8.57707 8.75050 9.04283 9.42224 10.90599 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.002816 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.511582 B = 9940.035938 C =10431.332993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.270 3.730 4 H 0.058 0.942 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.502 3.498 15 O -0.524 6.524 16 C 0.039 3.961 17 O -0.286 6.286 18 C 0.134 3.866 19 C -0.214 4.214 20 C -0.076 4.076 21 C -0.134 4.134 22 C -0.110 4.110 23 C -0.049 4.049 24 C -0.117 4.117 25 C -0.149 4.149 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.389 0.611 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.129 0.871 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.839 8.776 17.430 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.169 3.831 4 H 0.075 0.925 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.515 5.515 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.285 3.715 15 O -0.401 6.401 16 C -0.040 4.040 17 O -0.198 6.198 18 C 0.088 3.912 19 C -0.233 4.233 20 C -0.094 4.094 21 C -0.134 4.134 22 C -0.166 4.166 23 C -0.049 4.049 24 C -0.174 4.174 25 C -0.168 4.168 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.221 0.779 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.467 8.639 16.319 21.735 hybrid contribution 1.674 -0.300 0.450 1.759 sum -9.794 8.339 16.769 21.134 Atomic orbital electron populations 1.21854 0.97965 0.98287 1.01565 1.21866 0.93006 0.99782 1.01277 1.18842 0.94438 0.88901 0.80932 0.92451 1.21152 0.90410 1.44261 1.01882 0.92023 1.24890 0.98530 0.95107 0.94946 1.69985 1.35820 1.43559 1.02163 0.86515 0.84888 0.78719 0.77305 1.20396 1.21146 1.19907 1.46373 1.13993 1.56169 1.18882 1.19784 0.83403 0.80090 0.88193 1.90721 1.51154 1.58533 1.39679 1.22658 0.83439 0.99026 0.98897 1.86197 1.30069 1.68678 1.34849 1.19096 0.93161 0.92597 0.86306 1.21270 1.01369 1.06593 0.94039 1.20773 0.94733 0.96282 0.97637 1.19622 0.94956 1.02909 0.95891 1.20762 1.00935 0.99610 0.95313 1.19505 0.96145 0.96843 0.92414 1.20871 0.92695 1.00803 1.02987 1.20299 0.93918 1.02630 0.99945 0.95655 0.94103 0.92884 0.90116 0.94626 0.92476 0.77893 0.89565 0.89681 0.85362 0.85915 0.91592 0.91936 0.91408 0.90926 0.91006 0.91336 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.77 16 2 C -0.12 -2.85 5.50 -26.73 -0.15 -3.00 16 3 C 0.27 6.68 2.11 -69.09 -0.15 6.53 16 4 H 0.06 1.67 7.52 -51.93 -0.39 1.28 16 5 C -0.54 -13.96 8.66 -34.44 -0.30 -14.26 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.75 16 8 N -0.88 -24.69 12.16 55.43 0.67 -24.02 16 9 Si 0.90 20.35 29.55 -169.99 -5.02 15.33 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.70 -14.10 5.02 -54.93 -0.28 -14.37 16 14 C 0.50 9.93 6.47 -10.98 -0.07 9.86 16 15 O -0.52 -12.62 13.64 -14.35 -0.20 -12.82 16 16 C 0.04 0.58 5.22 36.01 0.19 0.76 16 17 O -0.29 -4.81 9.67 -39.33 -0.38 -5.19 16 18 C 0.13 1.91 6.69 -39.21 -0.26 1.65 16 19 C -0.21 -2.54 9.04 -39.43 -0.36 -2.90 16 20 C -0.08 -0.79 9.69 -39.60 -0.38 -1.18 16 21 C -0.13 -1.35 5.88 -104.60 -0.62 -1.97 16 22 C -0.11 -0.78 9.60 36.01 0.35 -0.43 16 23 C -0.05 -0.53 5.88 -104.65 -0.62 -1.14 16 24 C -0.12 -0.91 9.60 36.01 0.35 -0.57 16 25 C -0.15 -1.94 9.64 -39.43 -0.38 -2.32 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 28 H 0.05 1.27 7.84 -51.93 -0.41 0.86 16 29 H 0.08 2.10 6.80 -51.93 -0.35 1.75 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.39 6.50 8.53 -40.82 -0.35 6.15 16 33 H 0.09 1.07 7.67 -51.93 -0.40 0.67 16 34 H 0.09 1.03 7.65 -51.93 -0.40 0.63 16 35 H 0.13 1.29 6.30 -52.49 -0.33 0.96 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.07 0.41 5.94 -51.93 -0.31 0.11 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.45 5.94 -51.93 -0.31 0.15 16 42 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 43 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 349.75 15.07 5.27 5.27 Total: -1.00 -31.47 349.75 -8.55 -40.02 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.45 Total: 5.75 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.17 Total: -9.98 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.40 Total: -38.39 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.58 Total: -18.01 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.47 -8.55 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.630 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds