Wall clock time and date at job start Tue Mar 31 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47300 * 2 1 4 4 H 1.08999 * 109.46781 * 304.90152 * 3 2 1 5 5 C 1.50702 * 109.46713 * 184.90196 * 3 2 1 6 6 H 1.07998 * 120.00000 * 245.44692 * 5 3 2 7 7 C 1.37872 * 120.00375 * 65.45568 * 5 3 2 8 8 N 1.31520 * 120.00010 * 9.46447 * 7 5 3 9 9 Si 1.86802 * 120.00418 * 189.46910 * 7 5 3 10 10 H 1.48493 * 109.47331 * 84.98547 * 9 7 5 11 11 H 1.48496 * 109.47037 * 204.99423 * 9 7 5 12 12 H 1.48503 * 109.46748 * 324.98767 * 9 7 5 13 13 N 1.46492 * 109.47363 * 64.90341 * 3 2 1 14 14 C 1.34781 * 119.99706 * 275.00332 * 13 3 2 15 15 O 1.21276 * 119.99985 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99700 * 180.02562 * 14 13 3 17 17 O 1.42901 * 109.46603 * 179.97438 * 16 14 13 18 18 C 1.35899 * 116.99588 * 179.97438 * 17 16 14 19 19 C 1.38756 * 120.05769 * 359.72271 * 18 17 16 20 20 C 1.38128 * 119.94357 * 179.79249 * 19 18 17 21 21 C 1.38288 * 120.05205 * 0.48396 * 20 19 18 22 22 C 1.50709 * 119.93636 * 179.72762 * 21 20 19 23 23 C 1.38232 * 120.11707 * 359.74639 * 21 20 19 24 24 C 1.50702 * 119.97389 * 179.97438 * 23 21 20 25 25 C 1.38164 * 120.05699 * 0.02562 * 23 21 20 26 26 H 1.08999 * 109.47408 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46732 * 300.00334 * 1 2 3 28 28 H 1.09005 * 109.46919 * 59.99688 * 1 2 3 29 29 H 1.09001 * 109.46732 * 239.99666 * 2 1 3 30 30 H 1.09005 * 109.46919 * 120.00312 * 2 1 3 31 31 H 0.96998 * 120.00037 * 180.02562 * 8 7 5 32 32 H 0.96995 * 120.00354 * 94.99590 * 13 3 2 33 33 H 1.08994 * 109.47240 * 59.99667 * 16 14 13 34 34 H 1.08994 * 109.46874 * 299.99281 * 16 14 13 35 35 H 1.07999 * 120.02659 * 0.02562 * 19 18 17 36 36 H 1.07999 * 119.96762 * 180.21527 * 20 19 18 37 37 H 1.09001 * 109.46555 * 270.02001 * 22 21 20 38 38 H 1.08990 * 109.47454 * 30.02180 * 22 21 20 39 39 H 1.09001 * 109.46610 * 150.02355 * 22 21 20 40 40 H 1.08994 * 109.47226 * 270.02059 * 24 23 21 41 41 H 1.08995 * 109.47278 * 30.02389 * 24 23 21 42 42 H 1.09003 * 109.47235 * 150.02378 * 24 23 21 43 43 H 1.08004 * 120.03426 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6068 1.9810 -0.8428 5 6 3.5422 1.4441 -0.1214 6 1 4.1494 1.8089 0.6938 7 6 4.1412 0.9799 -1.2732 8 7 3.4097 0.7114 -2.3326 9 14 5.9920 0.7324 -1.3290 10 1 6.3290 -0.6069 -0.7835 11 1 6.4618 0.8272 -2.7345 12 1 6.6563 1.7806 -0.5134 13 7 1.6506 2.0982 1.2507 14 6 0.4330 2.6652 1.3636 15 8 -0.3398 2.6329 0.4295 16 6 0.0326 3.3402 2.6501 17 8 -1.2924 3.8601 2.5227 18 6 -1.8090 4.5037 3.6024 19 6 -1.0583 4.6272 4.7628 20 6 -1.5841 5.2855 5.8574 21 6 -2.8613 5.8125 5.8008 22 6 -3.4347 6.5249 6.9987 23 6 -3.6131 5.6867 4.6476 24 6 -5.0049 6.2617 4.5897 25 6 -3.0901 5.0332 3.5484 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8311 0.3845 -3.1428 32 1 2.2688 2.1242 1.9977 33 1 0.7236 4.1558 2.8629 34 1 0.0625 2.6167 3.4647 35 1 -0.0623 4.2122 4.8088 36 1 -0.9987 5.3848 6.7596 37 1 -3.9548 5.8074 7.6335 38 1 -2.6285 6.9924 7.5638 39 1 -4.1358 7.2900 6.6651 40 1 -5.7222 5.5113 4.9220 41 1 -5.0648 7.1346 5.2398 42 1 -5.2345 6.5552 3.5653 43 1 -3.6779 4.9347 2.6477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183949794.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:56 Heat of formation + Delta-G solvation = -84.268119 kcal Electronic energy + Delta-G solvation = -22690.722776 eV Core-core repulsion = 19313.912676 eV Total energy + Delta-G solvation = -3376.810100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45020 -40.50990 -38.80348 -36.87815 -34.34606 -33.59575 -33.17021 -32.78900 -30.13541 -28.77444 -27.76506 -26.77245 -24.96901 -23.23463 -22.48434 -21.45950 -21.13111 -19.20515 -18.75650 -17.60778 -17.44601 -17.10796 -16.75860 -16.25039 -16.00049 -15.81435 -15.21441 -14.97686 -14.79342 -14.59949 -14.28886 -13.99425 -13.71606 -13.54699 -13.49887 -13.30479 -13.07270 -12.93716 -12.85679 -12.74140 -12.61618 -12.21622 -12.11108 -12.07487 -11.73409 -11.70817 -11.61932 -11.11819 -10.69095 -10.53383 -9.74350 -9.71187 -8.97599 -8.20083 -6.33536 0.36946 0.46092 1.45017 1.46204 1.55484 1.70609 1.73839 2.40926 2.76083 2.89727 3.11901 3.73289 3.90320 3.94494 4.02563 4.12925 4.13671 4.30013 4.36332 4.43956 4.44640 4.50512 4.69423 4.75527 4.81821 4.85657 4.97360 5.02817 5.04208 5.20133 5.22574 5.24300 5.38672 5.41538 5.45580 5.48168 5.59430 5.72077 5.74466 5.85410 5.93531 6.04614 6.42051 6.74885 6.91481 7.32064 7.51402 8.88841 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.032721 B = 0.002816 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.511582 B = 9940.035938 C =10431.332993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.277 3.723 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.969 3.031 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.262 1.262 13 N -0.697 5.697 14 C 0.497 3.503 15 O -0.576 6.576 16 C 0.051 3.949 17 O -0.322 6.322 18 C 0.104 3.896 19 C -0.217 4.217 20 C -0.080 4.080 21 C -0.134 4.134 22 C -0.109 4.109 23 C -0.055 4.055 24 C -0.117 4.117 25 C -0.173 4.173 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.023 0.977 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.265 0.735 32 H 0.408 0.592 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.066 0.934 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.098 9.494 21.043 25.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.173 3.827 4 H 0.020 0.980 5 C -0.587 4.587 6 H 0.095 0.905 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.794 3.206 10 H -0.195 1.195 11 H -0.216 1.216 12 H -0.186 1.186 13 N -0.348 5.348 14 C 0.283 3.717 15 O -0.455 6.455 16 C -0.027 4.027 17 O -0.235 6.235 18 C 0.059 3.941 19 C -0.236 4.236 20 C -0.097 4.097 21 C -0.134 4.134 22 C -0.165 4.165 23 C -0.056 4.056 24 C -0.173 4.173 25 C -0.192 4.192 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.244 0.756 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.085 0.915 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.716 9.372 19.993 24.544 hybrid contribution 1.344 -0.446 -0.623 1.547 sum -9.373 8.926 19.370 23.296 Atomic orbital electron populations 1.21696 0.96928 0.99396 1.00301 1.21717 0.93814 0.98991 1.00647 1.18421 0.93926 0.89052 0.81275 0.98036 1.21534 0.91079 1.43786 1.02264 0.90545 1.25802 1.03283 0.94804 0.94552 1.70145 1.37897 1.44734 1.02835 0.85407 0.79072 0.79103 0.77058 1.19499 1.21613 1.18637 1.46073 1.14833 1.55902 1.18002 1.20651 0.82413 0.79181 0.89458 1.90702 1.52533 1.60272 1.42032 1.22567 0.83701 1.00339 0.96110 1.86126 1.30814 1.69786 1.36797 1.19347 0.94018 0.94091 0.86651 1.21505 1.01953 1.06617 0.93490 1.21176 0.95115 0.95329 0.98111 1.20081 0.94853 1.02010 0.96494 1.20835 1.01633 0.99884 0.94172 1.19855 0.97499 0.96216 0.91982 1.20939 0.91162 1.01643 1.03530 1.20481 0.94098 1.03941 1.00658 0.93184 0.93715 0.95794 0.92930 0.92801 0.92625 0.75609 0.86678 0.86304 0.83563 0.83095 0.90518 0.90637 0.90330 0.89953 0.89083 0.91472 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.51 71.98 0.61 -5.09 16 2 C -0.11 -5.43 5.50 30.59 0.17 -5.27 16 3 C 0.28 14.03 2.11 44.25 0.09 14.12 16 4 H 0.00 0.10 7.52 -2.39 -0.02 0.09 16 5 C -0.55 -28.47 8.66 25.60 0.22 -28.25 16 6 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 7 C 0.02 0.86 5.16 84.65 0.44 1.30 16 8 N -0.92 -53.28 12.16 21.45 0.26 -53.02 16 9 Si 0.97 41.60 29.55 68.60 2.03 43.63 16 10 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 11 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 13 N -0.70 -27.76 5.02 -446.10 -2.24 -30.00 16 14 C 0.50 19.83 6.47 87.66 0.57 20.39 16 15 O -0.58 -29.01 13.64 16.02 0.22 -28.79 16 16 C 0.05 1.45 5.22 71.24 0.37 1.82 16 17 O -0.32 -10.94 9.67 -73.37 -0.71 -11.65 16 18 C 0.10 2.92 6.69 22.51 0.15 3.07 16 19 C -0.22 -4.70 9.04 22.37 0.20 -4.50 16 20 C -0.08 -1.42 9.69 22.26 0.22 -1.20 16 21 C -0.13 -2.36 5.88 -19.85 -0.12 -2.48 16 22 C -0.11 -1.15 9.60 71.24 0.68 -0.47 16 23 C -0.06 -1.13 5.88 -19.88 -0.12 -1.25 16 24 C -0.12 -1.63 9.60 71.24 0.68 -0.94 16 25 C -0.17 -4.58 9.64 22.37 0.22 -4.36 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.96 5.65 -2.39 -0.01 1.95 16 28 H 0.02 1.18 7.84 -2.38 -0.02 1.16 16 29 H 0.05 2.83 6.80 -2.39 -0.02 2.81 16 30 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 31 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 32 H 0.41 12.95 8.53 -92.71 -0.79 12.16 16 33 H 0.12 2.59 7.67 -2.39 -0.02 2.57 16 34 H 0.12 2.56 7.65 -2.39 -0.02 2.54 16 35 H 0.15 2.49 6.30 -2.91 -0.02 2.47 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 39 H 0.08 0.67 5.94 -2.39 -0.01 0.66 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 0.90 5.94 -2.39 -0.01 0.89 16 42 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 43 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -72.17 349.75 4.17 -67.99 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.22 Total: 24.95 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 4.39 Total: -13.11 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -1.98 Total: -83.02 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.49 Total: -40.44 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -72.17 4.17 -67.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183949794.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.274 kcal (2) G-P(sol) polarization free energy of solvation -72.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds