Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47006 * 179.97438 * 17 16 14 19 19 C 1.38169 * 120.02898 * 264.99823 * 18 17 16 20 20 C 1.38239 * 120.05451 * 179.97438 * 19 18 17 21 21 C 1.38286 * 120.11517 * 0.03112 * 20 19 18 22 22 C 1.38119 * 120.05433 * 0.02562 * 21 20 19 23 23 C 1.38710 * 120.02691 * 84.72115 * 18 17 16 24 24 O 1.35897 * 120.05879 * 0.02562 * 23 18 17 25 25 C 1.42901 * 117.00255 * 179.97438 * 24 23 18 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 29 29 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 30 30 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 31 31 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 33 33 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 34 34 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 35 35 H 1.09002 * 109.47281 * 299.99730 * 17 16 14 36 36 H 1.08997 * 109.47550 * 59.99777 * 17 16 14 37 37 H 1.07997 * 119.97088 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.94211 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.97179 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.02688 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47096 * 179.97438 * 25 24 23 42 42 H 1.08994 * 109.47113 * 299.99959 * 25 24 23 43 43 H 1.08996 * 109.46836 * 60.00269 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3826 3.8941 -2.5214 18 6 -1.7809 4.5688 -3.8087 19 6 -1.6151 5.9327 -3.9546 20 6 -1.9797 6.5521 -5.1354 21 6 -2.5117 5.8090 -6.1732 22 6 -2.6806 4.4454 -6.0319 23 6 -2.3089 3.8202 -4.8503 24 8 -2.4682 2.4778 -4.7112 25 6 -3.0183 1.7709 -5.8246 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0608 2.9500 32 1 2.2720 2.1231 -1.9978 33 1 0.7280 4.1540 -2.8668 34 1 0.0680 2.6143 -3.4687 35 1 -2.0738 3.0783 -2.3094 36 1 -1.4145 4.6181 -1.7072 37 1 -1.2003 6.5154 -3.1454 38 1 -1.8489 7.6183 -5.2476 39 1 -2.7962 6.2953 -7.0946 40 1 -3.0965 3.8655 -6.8426 41 1 -3.0914 0.7109 -5.5818 42 1 -4.0107 2.1619 -6.0488 43 1 -2.3720 1.9007 -6.6926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183953194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = -68.281356 kcal Electronic energy + Delta-G solvation = -23097.757649 eV Core-core repulsion = 19721.640787 eV Total energy + Delta-G solvation = -3376.116862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38291 -38.89493 -37.51374 -35.14118 -33.76207 -32.29128 -30.97539 -30.28010 -29.49545 -27.45851 -26.89768 -24.49201 -22.83703 -22.23288 -21.23246 -19.95433 -19.18555 -18.08747 -17.03799 -16.42458 -15.94866 -15.83470 -15.33894 -15.16076 -14.91290 -14.53745 -14.20881 -13.89834 -13.33285 -13.11628 -13.03152 -12.64970 -12.53808 -12.10067 -11.92230 -11.69045 -11.56649 -11.36165 -11.26326 -11.21331 -10.92258 -10.80386 -10.79761 -10.62137 -10.26425 -10.09320 -9.56359 -9.05228 -8.97251 -8.78704 -8.45188 -8.21233 -7.71312 -6.08399 -4.17359 1.19966 1.32806 3.17609 3.25646 3.33485 3.36265 3.56740 3.62680 4.21755 4.43538 4.65613 4.69541 4.91996 4.96470 4.96715 5.20627 5.22877 5.26098 5.32706 5.38616 5.48334 5.54675 5.69749 5.92777 6.00097 6.04133 6.23299 6.37522 6.43036 6.45820 6.53302 6.55926 6.70443 6.73808 7.11525 7.27095 7.29216 7.44748 7.56372 7.68047 7.80840 7.96983 8.24208 8.77889 8.84609 9.26531 9.50782 10.96920 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024384 B = 0.003272 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.022300 B = 8555.036879 C = 9051.910786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.048 0.952 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.065 3.935 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.712 5.712 14 C 0.501 3.499 15 O -0.551 6.551 16 C -0.134 4.134 17 C -0.054 4.054 18 C -0.107 4.107 19 C -0.080 4.080 20 C -0.157 4.157 21 C -0.090 4.090 22 C -0.210 4.210 23 C 0.129 3.871 24 O -0.308 6.308 25 C 0.027 3.973 26 H 0.040 0.960 27 H 0.021 0.979 28 H 0.049 0.951 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.263 0.737 32 H 0.387 0.613 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 7.421 -17.514 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.138 4.138 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.431 6.431 16 C -0.174 4.174 17 C -0.092 4.092 18 C -0.108 4.108 19 C -0.098 4.098 20 C -0.175 4.175 21 C -0.108 4.108 22 C -0.228 4.228 23 C 0.084 3.916 24 O -0.221 6.221 25 C -0.068 4.068 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.219 0.781 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.445 7.150 -16.473 21.294 hybrid contribution 1.219 -0.059 -0.671 1.393 sum -10.225 7.091 -17.144 21.184 Atomic orbital electron populations 1.21835 0.98325 0.97905 1.01322 1.21923 0.92645 0.99905 1.02111 1.18753 0.94053 0.89168 0.81271 0.93402 1.21297 0.90881 1.38726 1.06166 0.92106 1.24896 0.98531 0.94902 0.95440 1.69916 1.34948 1.37789 1.09342 0.86418 0.85018 0.77728 0.78076 1.19772 1.20916 1.20922 1.46501 1.14837 1.56207 1.18382 1.20394 0.82598 0.79256 0.89146 1.90654 1.51421 1.60130 1.40858 1.21625 0.97467 1.01006 0.97299 1.20141 0.95804 1.00493 0.92768 1.19436 1.02443 0.93217 0.95654 1.20982 0.97920 0.93128 0.97728 1.21038 1.02515 0.99977 0.94003 1.20881 0.98040 0.93209 0.98660 1.21206 1.07691 0.96208 0.97723 1.18916 0.96006 0.82957 0.93756 1.86157 1.78688 1.16976 1.40312 1.23053 0.97734 0.97195 0.88812 0.94122 0.96018 0.93213 0.95166 0.88428 0.92690 0.78099 0.89808 0.89620 0.89923 0.90395 0.85216 0.86039 0.86127 0.85698 0.88174 0.92868 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.30 16 3 C 0.27 6.89 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -25.00 11.30 55.43 0.63 -24.37 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.71 -15.01 5.02 -54.93 -0.28 -15.29 16 14 C 0.50 10.02 6.40 -10.98 -0.07 9.95 16 15 O -0.55 -12.94 13.12 5.56 0.07 -12.87 16 16 C -0.13 -2.02 5.68 -27.88 -0.16 -2.18 16 17 C -0.05 -0.80 4.35 -27.88 -0.12 -0.92 16 18 C -0.11 -1.37 5.15 -104.47 -0.54 -1.91 16 19 C -0.08 -0.88 9.68 -39.61 -0.38 -1.26 16 20 C -0.16 -1.52 10.04 -39.56 -0.40 -1.92 16 21 C -0.09 -0.84 10.04 -39.61 -0.40 -1.23 16 22 C -0.21 -2.13 9.04 -39.43 -0.36 -2.48 16 23 C 0.13 1.59 6.66 -39.21 -0.26 1.33 16 24 O -0.31 -3.84 9.64 -19.42 -0.19 -4.03 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.39 7.16 8.54 -40.82 -0.35 6.81 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.08 1.35 7.66 -51.93 -0.40 0.95 16 36 H 0.08 1.16 8.01 -51.93 -0.42 0.75 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 43 H 0.05 0.37 7.68 -51.93 -0.40 -0.03 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -31.40 350.79 -8.18 -39.59 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.62 Total: 7.57 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.07 Total: -11.66 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.35 Total: -39.66 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.11 Total: -16.90 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.40 -8.18 -39.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183953194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.693 kcal (2) G-P(sol) polarization free energy of solvation -31.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds