Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47006 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47006 * 179.97438 * 17 16 14 19 19 C 1.38169 * 120.02898 * 264.99823 * 18 17 16 20 20 C 1.38239 * 120.05451 * 179.97438 * 19 18 17 21 21 C 1.38286 * 120.11517 * 0.03112 * 20 19 18 22 22 C 1.38119 * 120.05433 * 0.02562 * 21 20 19 23 23 C 1.38710 * 120.02691 * 84.72115 * 18 17 16 24 24 O 1.35897 * 120.05879 * 0.02562 * 23 18 17 25 25 C 1.42901 * 117.00255 * 179.97438 * 24 23 18 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 29 29 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 30 30 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 31 31 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 33 33 H 1.09002 * 109.46880 * 299.99754 * 16 14 13 34 34 H 1.09003 * 109.46851 * 59.99965 * 16 14 13 35 35 H 1.09002 * 109.47281 * 299.99730 * 17 16 14 36 36 H 1.08997 * 109.47550 * 59.99777 * 17 16 14 37 37 H 1.07997 * 119.97088 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.94211 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.97179 * 179.97438 * 21 20 19 40 40 H 1.08005 * 120.02688 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.47096 * 179.97438 * 25 24 23 42 42 H 1.08994 * 109.47113 * 299.99959 * 25 24 23 43 43 H 1.08996 * 109.46836 * 60.00269 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 6 -1.3826 3.8941 -2.5214 18 6 -1.7809 4.5688 -3.8087 19 6 -1.6151 5.9327 -3.9546 20 6 -1.9797 6.5521 -5.1354 21 6 -2.5117 5.8090 -6.1732 22 6 -2.6806 4.4454 -6.0319 23 6 -2.3089 3.8202 -4.8503 24 8 -2.4682 2.4778 -4.7112 25 6 -3.0183 1.7709 -5.8246 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0608 2.9500 32 1 2.2720 2.1231 -1.9978 33 1 0.7280 4.1540 -2.8668 34 1 0.0680 2.6143 -3.4687 35 1 -2.0738 3.0783 -2.3094 36 1 -1.4145 4.6181 -1.7072 37 1 -1.2003 6.5154 -3.1454 38 1 -1.8489 7.6183 -5.2476 39 1 -2.7962 6.2953 -7.0946 40 1 -3.0965 3.8655 -6.8426 41 1 -3.0914 0.7109 -5.5818 42 1 -4.0107 2.1619 -6.0488 43 1 -2.3720 1.9007 -6.6926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183953194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -87.247748 kcal Electronic energy + Delta-G solvation = -23098.580094 eV Core-core repulsion = 19721.640787 eV Total energy + Delta-G solvation = -3376.939307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.24814 -40.53623 -38.31650 -36.99985 -34.92297 -34.25473 -32.81159 -31.09748 -30.59544 -28.89482 -28.06898 -25.83057 -24.68234 -22.99505 -22.36512 -21.61409 -20.98438 -18.92591 -18.78828 -17.50510 -17.26931 -17.14279 -16.59074 -16.48206 -16.26159 -16.00212 -15.28432 -15.02274 -14.73937 -14.61909 -14.32119 -13.93566 -13.70466 -13.53490 -13.30569 -13.16333 -12.91843 -12.76469 -12.74140 -12.69221 -12.43133 -12.14622 -12.05621 -11.97696 -11.78971 -11.61685 -11.57061 -11.02537 -10.63284 -10.48071 -9.75007 -9.57308 -9.04196 -8.15116 -6.32443 0.40366 0.54165 1.44197 1.45166 1.57232 1.94009 2.37813 2.46110 2.69430 2.90225 3.14095 3.80153 3.91760 4.06050 4.15466 4.26170 4.33982 4.40627 4.42107 4.49550 4.55369 4.57437 4.58124 4.68666 4.75471 4.78384 4.81723 4.96559 5.08190 5.10159 5.25938 5.30171 5.45472 5.46217 5.57763 5.57961 5.66534 5.67279 5.81392 5.93848 5.96373 6.18891 6.53003 6.76649 7.05859 7.35247 7.66157 8.90445 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024384 B = 0.003272 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.022300 B = 8555.036879 C = 9051.910786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.279 1.279 13 N -0.709 5.709 14 C 0.497 3.503 15 O -0.590 6.590 16 C -0.116 4.116 17 C -0.045 4.045 18 C -0.131 4.131 19 C -0.087 4.087 20 C -0.159 4.159 21 C -0.086 4.086 22 C -0.212 4.212 23 C 0.113 3.887 24 O -0.337 6.337 25 C 0.019 3.981 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.024 0.976 29 H 0.039 0.961 30 H 0.071 0.929 31 H 0.264 0.736 32 H 0.402 0.598 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.464 8.372 -20.443 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.205 1.205 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.471 6.471 16 C -0.156 4.156 17 C -0.083 4.083 18 C -0.131 4.131 19 C -0.105 4.105 20 C -0.177 4.177 21 C -0.104 4.104 22 C -0.230 4.230 23 C 0.068 3.932 24 O -0.251 6.251 25 C -0.075 4.075 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.126 0.874 42 H 0.084 0.916 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.939 8.111 -19.448 23.742 hybrid contribution 0.975 -0.325 0.207 1.048 sum -9.964 7.786 -19.242 23.025 Atomic orbital electron populations 1.21668 0.97038 0.99018 1.00226 1.21777 0.93688 0.99311 1.01157 1.18347 0.93587 0.89124 0.81603 0.98545 1.21630 0.91506 1.38763 1.06637 0.91093 1.25796 1.03377 0.94418 0.95036 1.70069 1.36981 1.38473 1.09885 0.85313 0.79088 0.77816 0.78202 1.18436 1.20995 1.20452 1.46303 1.15782 1.56247 1.17450 1.21253 0.81537 0.78390 0.90348 1.90640 1.52394 1.61341 1.42754 1.21553 0.98272 1.01478 0.94324 1.19944 0.94843 0.99484 0.93994 1.19333 1.04692 0.94085 0.95012 1.21156 0.98031 0.92537 0.98783 1.21361 1.01686 1.01289 0.93352 1.21302 0.96605 0.92925 0.99588 1.21496 1.07163 0.96904 0.97459 1.19112 0.96563 0.83095 0.94444 1.86113 1.79214 1.17384 1.42350 1.23295 0.98569 0.97346 0.88303 0.93788 0.93677 0.95667 0.94174 0.91078 0.92648 0.76320 0.87410 0.88227 0.92437 0.91478 0.84524 0.83626 0.83146 0.83536 0.87386 0.91561 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.13 16 2 C -0.12 -6.12 5.45 30.60 0.17 -5.95 16 3 C 0.28 14.57 2.24 44.25 0.10 14.66 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -29.45 8.73 25.60 0.22 -29.23 16 6 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 7 C 0.01 0.74 5.29 84.65 0.45 1.19 16 8 N -0.92 -53.17 11.30 21.45 0.24 -52.93 16 9 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 10 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 13 N -0.71 -30.11 5.02 -446.09 -2.24 -32.35 16 14 C 0.50 20.20 6.40 87.66 0.56 20.76 16 15 O -0.59 -28.85 13.12 -3.02 -0.04 -28.88 16 16 C -0.12 -3.46 5.68 29.85 0.17 -3.29 16 17 C -0.04 -1.34 4.35 29.85 0.13 -1.21 16 18 C -0.13 -3.26 5.15 -19.77 -0.10 -3.36 16 19 C -0.09 -1.80 9.68 22.25 0.22 -1.59 16 20 C -0.16 -2.62 10.04 22.28 0.22 -2.39 16 21 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 22 C -0.21 -3.75 9.04 22.37 0.20 -3.54 16 23 C 0.11 2.65 6.66 22.51 0.15 2.80 16 24 O -0.34 -8.17 9.64 -92.39 -0.89 -9.06 16 25 C 0.02 0.28 9.81 113.37 1.11 1.39 16 26 H 0.04 2.00 5.64 -2.39 -0.01 1.99 16 27 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.02 1.26 7.85 -2.39 -0.02 1.24 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.40 14.54 8.54 -92.71 -0.79 13.75 16 33 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 35 H 0.06 1.97 7.66 -2.39 -0.02 1.95 16 36 H 0.07 2.08 8.01 -2.39 -0.02 2.06 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.15 1.85 6.30 -2.91 -0.02 1.83 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 0.77 7.65 -2.39 -0.02 0.76 16 43 H 0.07 0.79 7.68 -2.39 -0.02 0.77 16 Total: -1.00 -70.06 350.79 3.75 -66.31 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 0.21 Total: 28.30 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 4.44 Total: -15.97 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -2.00 Total: -85.28 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -0.93 Total: -37.94 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.06 3.75 -66.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183953194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.934 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds