Wall clock time and date at job start Tue Mar 31 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47013 * 2 1 4 4 H 1.09004 * 109.46930 * 305.00026 * 3 2 1 5 5 C 1.50703 * 109.47292 * 185.00051 * 3 2 1 6 6 H 1.07994 * 119.99399 * 240.00067 * 5 3 2 7 7 C 1.37874 * 119.99789 * 59.99693 * 5 3 2 8 8 N 1.31518 * 120.00144 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46762 * 60.00562 * 9 7 5 11 11 H 1.48506 * 109.46725 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47116 * 300.00217 * 9 7 5 13 13 N 1.46506 * 109.47035 * 64.99796 * 3 2 1 14 14 C 1.34767 * 120.00003 * 274.99925 * 13 3 2 15 15 O 1.21281 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99889 * 179.97438 * 14 13 3 17 17 C 1.52998 * 109.47148 * 180.02562 * 16 14 13 18 18 C 1.50696 * 109.47121 * 180.02562 * 17 16 14 19 19 C 1.38166 * 120.02874 * 264.99664 * 18 17 16 20 20 C 1.38245 * 120.05674 * 179.97438 * 19 18 17 21 21 C 1.38282 * 120.11144 * 0.02815 * 20 19 18 22 22 C 1.38122 * 120.05937 * 0.02562 * 21 20 19 23 23 C 1.38715 * 120.03098 * 84.72530 * 18 17 16 24 24 O 1.35905 * 120.05234 * 359.97438 * 23 18 17 25 25 C 1.42900 * 116.99753 * 180.02562 * 24 23 18 26 26 H 1.09001 * 109.46690 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47116 * 299.99803 * 1 2 3 28 28 H 1.08988 * 109.47502 * 60.00190 * 1 2 3 29 29 H 1.08997 * 109.47159 * 240.00180 * 2 1 3 30 30 H 1.09005 * 109.47284 * 119.99696 * 2 1 3 31 31 H 0.96997 * 119.99752 * 179.97438 * 8 7 5 32 32 H 0.96996 * 119.99678 * 95.00711 * 13 3 2 33 33 H 1.08994 * 109.47394 * 300.00422 * 16 14 13 34 34 H 1.09001 * 109.46828 * 60.00478 * 16 14 13 35 35 H 1.09007 * 109.47327 * 300.00182 * 17 16 14 36 36 H 1.08997 * 109.47657 * 59.99911 * 17 16 14 37 37 H 1.08005 * 119.97008 * 359.97438 * 19 18 17 38 38 H 1.08001 * 119.94068 * 179.97438 * 20 19 18 39 39 H 1.08006 * 119.97113 * 179.97438 * 21 20 19 40 40 H 1.07998 * 120.02825 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.47244 * 300.00214 * 25 24 23 42 42 H 1.09001 * 109.46820 * 60.00440 * 25 24 23 43 43 H 1.08996 * 109.47219 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8814 -1.3818 10 1 6.5975 0.1475 -0.2349 11 1 6.3977 0.2179 -2.6510 12 1 6.4993 2.2817 -1.3822 13 7 1.6523 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4344 16 6 0.0362 3.3376 2.6549 17 6 -1.3830 3.8935 2.5215 18 6 -1.7817 4.5672 3.8091 19 6 -2.4991 3.8691 4.7615 20 6 -2.8647 4.4865 5.9432 21 6 -2.5141 5.8039 6.1750 22 6 -1.7979 6.5065 5.2257 23 6 -1.4239 5.8871 4.0417 24 8 -0.7130 6.5740 3.1091 25 6 -0.3791 7.9291 3.4164 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5137 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8292 -0.0603 -2.9502 32 1 2.2719 2.1233 1.9977 33 1 0.0672 2.6130 3.4685 34 1 0.7275 4.1530 2.8679 35 1 -1.4145 4.6181 1.7077 36 1 -2.0742 3.0780 2.3086 37 1 -2.7746 2.8402 4.5825 38 1 -3.4259 3.9392 6.6861 39 1 -2.8013 6.2841 7.0988 40 1 -1.5247 7.5355 5.4071 41 1 -1.2932 8.5029 3.5692 42 1 0.2239 7.9578 4.3240 43 1 0.1863 8.3603 2.5904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183953216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:46 Heat of formation + Delta-G solvation = -87.226455 kcal Electronic energy + Delta-G solvation = -23061.373169 eV Core-core repulsion = 19684.434785 eV Total energy + Delta-G solvation = -3376.938384 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24999 -40.53745 -38.32035 -36.99717 -34.92301 -34.25665 -32.80617 -31.09582 -30.59681 -28.89234 -28.07801 -25.83015 -24.67623 -22.99640 -22.36288 -21.61065 -20.98446 -18.92940 -18.78700 -17.47935 -17.30838 -17.14351 -16.60527 -16.42268 -16.30807 -15.99235 -15.29073 -15.04013 -14.72646 -14.59966 -14.33106 -13.90787 -13.75664 -13.48678 -13.29831 -13.15042 -12.95369 -12.77103 -12.75258 -12.64663 -12.44036 -12.17330 -12.03715 -11.98031 -11.80527 -11.61815 -11.55592 -11.04564 -10.62562 -10.47290 -9.74876 -9.57310 -9.04418 -8.14937 -6.32585 0.40469 0.54145 1.44494 1.46665 1.54392 1.93955 2.37757 2.45828 2.69430 2.90273 3.13980 3.80174 3.91678 4.05848 4.15661 4.25800 4.33690 4.40062 4.41211 4.50667 4.55518 4.57240 4.59304 4.69044 4.74461 4.78235 4.82256 4.96515 5.08865 5.10273 5.26830 5.30283 5.46221 5.46423 5.57722 5.58187 5.66480 5.67153 5.82070 5.94041 5.96671 6.19268 6.52662 6.76041 7.05904 7.35032 7.66165 8.90178 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.022456 B = 0.003344 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.610829 B = 8371.895235 C = 9070.051206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.005 1.005 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.709 5.709 14 C 0.497 3.503 15 O -0.590 6.590 16 C -0.116 4.116 17 C -0.045 4.045 18 C -0.131 4.131 19 C -0.086 4.086 20 C -0.158 4.158 21 C -0.086 4.086 22 C -0.212 4.212 23 C 0.112 3.888 24 O -0.338 6.338 25 C 0.019 3.981 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.402 0.598 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.146 0.854 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 11.571 19.175 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.013 0.987 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.471 6.471 16 C -0.156 4.156 17 C -0.083 4.083 18 C -0.131 4.131 19 C -0.104 4.104 20 C -0.176 4.176 21 C -0.104 4.104 22 C -0.231 4.231 23 C 0.066 3.934 24 O -0.252 6.252 25 C -0.075 4.075 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.237 0.763 33 H 0.129 0.871 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.164 0.836 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.533 11.396 18.136 23.445 hybrid contribution 1.176 0.127 -0.360 1.236 sum -8.357 11.523 17.776 22.773 Atomic orbital electron populations 1.21673 0.96934 0.99100 1.00299 1.21774 0.93809 0.99154 1.01200 1.18341 0.93521 0.89199 0.81563 0.98720 1.21578 0.91573 1.38944 1.06727 0.91159 1.25788 1.03383 0.94380 0.95004 1.70051 1.37136 1.38366 1.09824 0.85426 0.79061 0.78430 0.77580 1.18849 1.21154 1.19708 1.46301 1.15776 1.56239 1.17456 1.21252 0.81601 0.78271 0.90413 1.90641 1.52506 1.61272 1.42716 1.21553 0.98287 1.01220 0.94563 1.19944 0.95018 0.99193 0.94104 1.19340 1.03559 0.92301 0.97924 1.21162 0.96098 1.00203 0.92919 1.21369 1.02645 0.95772 0.97850 1.21305 0.95724 0.94364 0.99035 1.21491 1.05178 1.02006 0.94384 1.19139 0.93305 0.91696 0.89215 1.86118 1.68966 1.27412 1.42711 1.23292 1.01299 0.79271 1.03637 0.93558 0.93561 0.95747 0.91129 0.94060 0.92619 0.76321 0.87131 0.88509 0.92706 0.91211 0.84342 0.83538 0.83148 0.83614 0.91515 0.91372 0.87494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.07 5.45 30.60 0.17 -5.91 16 3 C 0.28 14.61 2.24 44.25 0.10 14.71 16 4 H -0.01 -0.32 7.58 -2.38 -0.02 -0.34 16 5 C -0.55 -29.73 8.73 25.60 0.22 -29.50 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -53.29 11.29 21.45 0.24 -53.05 16 9 Si 0.97 42.62 29.54 68.60 2.03 44.64 16 10 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 13 N -0.71 -30.14 5.02 -446.08 -2.24 -32.38 16 14 C 0.50 20.21 6.40 87.66 0.56 20.77 16 15 O -0.59 -28.86 13.12 -3.03 -0.04 -28.90 16 16 C -0.12 -3.46 5.68 29.85 0.17 -3.29 16 17 C -0.04 -1.33 4.35 29.85 0.13 -1.20 16 18 C -0.13 -3.26 5.15 -19.77 -0.10 -3.36 16 19 C -0.09 -1.74 9.68 22.25 0.22 -1.53 16 20 C -0.16 -2.57 10.04 22.28 0.22 -2.34 16 21 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 22 C -0.21 -3.81 9.04 22.37 0.20 -3.60 16 23 C 0.11 2.65 6.66 22.51 0.15 2.80 16 24 O -0.34 -8.47 9.64 -92.48 -0.89 -9.36 16 25 C 0.02 0.30 9.81 113.37 1.11 1.41 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 2.04 5.64 -2.38 -0.01 2.03 16 28 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 29 H 0.07 3.98 5.95 -2.39 -0.01 3.96 16 30 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.40 14.55 8.54 -92.71 -0.79 13.76 16 33 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.05 1.91 7.66 -2.38 -0.02 1.89 16 36 H 0.07 2.13 8.01 -2.39 -0.02 2.11 16 37 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.15 1.89 6.30 -2.91 -0.02 1.87 16 41 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 42 H 0.07 0.84 7.68 -2.39 -0.02 0.82 16 43 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -70.35 350.79 3.75 -66.61 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.21 Total: 28.39 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.44 Total: -15.96 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -2.00 Total: -85.42 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.93 Total: -38.26 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -70.35 3.75 -66.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183953216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.617 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds