Wall clock time and date at job start Tue Mar 31 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 H 1.08999 * 109.47152 * 304.99846 * 3 2 1 5 5 C 1.50702 * 109.47147 * 185.00069 * 3 2 1 6 6 H 1.08004 * 119.99917 * 239.99967 * 5 3 2 7 7 C 1.37878 * 120.00499 * 60.00049 * 5 3 2 8 8 N 1.31517 * 119.99308 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00227 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46867 * 90.00048 * 9 7 5 11 11 H 1.48500 * 109.47122 * 209.99591 * 9 7 5 12 12 H 1.48496 * 109.47238 * 329.99693 * 9 7 5 13 13 N 1.46502 * 109.47453 * 64.99963 * 3 2 1 14 14 C 1.34780 * 119.99785 * 275.00557 * 13 3 2 15 15 O 1.21280 * 119.99632 * 359.97438 * 14 13 3 16 16 C 1.50695 * 119.99896 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47067 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47070 * 179.97438 * 17 16 14 19 19 C 1.38291 * 119.97179 * 270.02311 * 18 17 16 20 20 C 1.38246 * 120.11138 * 180.02562 * 19 18 17 21 21 C 1.38169 * 120.05567 * 359.67999 * 20 19 18 22 22 C 1.38709 * 119.93966 * 0.57015 * 21 20 19 23 23 O 1.35905 * 120.05570 * 179.72312 * 22 21 20 24 24 C 1.42901 * 116.99604 * 359.72908 * 23 22 21 25 25 C 1.38119 * 119.97324 * 90.00054 * 18 17 16 26 26 H 1.09007 * 109.46701 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47344 * 300.00195 * 1 2 3 28 28 H 1.08998 * 109.47080 * 60.00344 * 1 2 3 29 29 H 1.09004 * 109.47423 * 240.00084 * 2 1 3 30 30 H 1.09005 * 109.47437 * 119.99656 * 2 1 3 31 31 H 0.97005 * 119.99927 * 180.02562 * 8 7 5 32 32 H 0.96994 * 119.99955 * 94.99421 * 13 3 2 33 33 H 1.09005 * 109.47401 * 59.99280 * 16 14 13 34 34 H 1.09001 * 109.47049 * 299.99448 * 16 14 13 35 35 H 1.09001 * 109.47011 * 60.00275 * 17 16 14 36 36 H 1.08994 * 109.47317 * 299.99570 * 17 16 14 37 37 H 1.08002 * 119.94189 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.97048 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.02712 * 180.29728 * 21 20 19 40 40 H 1.08999 * 109.47144 * 59.99795 * 24 23 22 41 41 H 1.08995 * 109.47253 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47352 * 299.99771 * 24 23 22 43 43 H 1.08006 * 120.02943 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0050 0.8802 -1.3811 10 1 6.5538 -0.3519 -0.7597 11 1 6.3836 0.9216 -2.8164 12 1 6.5575 2.0721 -0.6888 13 7 1.6524 2.0976 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3394 2.6325 0.4340 16 6 0.0361 3.3377 2.6547 17 6 -1.3826 3.8945 2.5209 18 6 -1.7818 4.5673 3.8090 19 6 -2.4092 3.8391 4.8032 20 6 -2.7771 4.4534 5.9858 21 6 -2.5126 5.7957 6.1797 22 6 -1.8881 6.5294 5.1819 23 8 -1.6320 7.8511 5.3679 24 6 -2.0385 8.4216 6.6134 25 6 -1.5203 5.9106 3.9957 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0618 -2.9495 32 1 2.2718 2.1232 1.9977 33 1 0.7275 4.1530 2.8678 34 1 0.0671 2.6130 3.4684 35 1 -2.0742 3.0794 2.3077 36 1 -1.4133 4.6192 1.7074 37 1 -2.6129 2.7888 4.6553 38 1 -3.2673 3.8827 6.7605 39 1 -2.7959 6.2740 7.1056 40 1 -1.5331 7.9074 7.4308 41 1 -1.7752 9.4791 6.6319 42 1 -3.1171 8.3134 6.7279 43 1 -1.0303 6.4789 3.2189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183958892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:52 Heat of formation + Delta-G solvation = -69.951660 kcal Electronic energy + Delta-G solvation = -22574.735164 eV Core-core repulsion = 19198.545872 eV Total energy + Delta-G solvation = -3376.189292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32405 -39.05200 -37.78607 -35.14033 -33.56198 -32.32498 -31.04262 -30.69516 -29.31500 -27.54631 -26.93509 -24.48404 -22.87491 -22.62188 -21.03646 -20.00224 -19.23812 -17.91646 -17.01133 -16.46851 -16.13537 -15.96306 -15.64576 -15.27084 -15.07697 -14.29285 -14.21760 -13.89407 -13.41763 -13.24261 -13.02042 -12.71647 -12.65513 -12.16411 -11.94758 -11.85674 -11.54061 -11.44634 -11.23769 -11.16159 -10.98527 -10.94286 -10.80409 -10.71452 -10.29495 -10.13066 -9.60457 -9.08572 -9.00176 -8.78225 -8.47417 -8.33483 -7.76227 -6.10233 -4.19431 1.18132 1.32164 3.04824 3.25333 3.32378 3.34550 3.49153 3.60754 4.16944 4.40548 4.59780 4.72250 4.83351 4.84367 4.98285 5.15479 5.18694 5.20992 5.24701 5.27604 5.38906 5.50283 5.66001 5.87480 5.92394 6.06521 6.13467 6.29265 6.32546 6.41878 6.48726 6.57017 6.65922 6.69379 7.06964 7.21714 7.23152 7.40610 7.51542 7.65035 7.77173 7.93862 8.21433 8.73203 8.81284 9.20908 9.48359 10.95066 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.002850 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.308937 B = 9820.495436 C =10531.673245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.710 5.710 14 C 0.499 3.501 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.065 4.065 18 C -0.035 4.035 19 C -0.153 4.153 20 C -0.080 4.080 21 C -0.217 4.217 22 C 0.126 3.874 23 O -0.319 6.319 24 C 0.028 3.972 25 C -0.148 4.148 26 H 0.021 0.979 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.567 10.066 17.770 22.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.285 3.715 15 O -0.430 6.430 16 C -0.177 4.177 17 C -0.103 4.103 18 C -0.036 4.036 19 C -0.171 4.171 20 C -0.098 4.098 21 C -0.236 4.236 22 C 0.081 3.919 23 O -0.232 6.232 24 C -0.067 4.067 25 C -0.167 4.167 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.989 10.078 16.760 22.432 hybrid contribution 1.219 -0.067 0.651 1.383 sum -9.770 10.011 17.410 22.334 Atomic orbital electron populations 1.21832 0.98354 0.97935 1.01248 1.21932 0.92622 0.99896 1.02188 1.18764 0.94099 0.89160 0.81218 0.93363 1.21251 0.90831 1.38887 1.06211 0.92145 1.24891 0.98558 0.94875 0.95407 1.69899 1.35078 1.37650 1.09380 0.86466 0.84971 0.78417 0.77356 1.20583 1.21095 1.19874 1.46507 1.14781 1.56063 1.18451 1.20370 0.82716 0.79323 0.89141 1.90664 1.51484 1.60101 1.40789 1.21657 0.97404 1.01211 0.97393 1.20358 0.95935 1.00645 0.93336 1.19832 0.95238 0.92545 0.95944 1.21034 1.01916 1.00303 0.93883 1.20909 0.97897 0.93860 0.97150 1.21176 1.06758 0.95924 0.99734 1.19021 0.95533 0.82885 0.94494 1.86082 1.77794 1.21340 1.37992 1.23029 0.99868 0.99105 0.84676 1.20376 1.05131 0.94578 0.96600 0.95962 0.94249 0.93169 0.88371 0.95129 0.92602 0.78026 0.89431 0.89519 0.89888 0.89933 0.85716 0.85915 0.85808 0.92725 0.88338 0.92765 0.85081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -14.10 8.73 -34.44 -0.30 -14.40 16 6 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.82 11.29 55.43 0.63 -24.19 16 9 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -14.54 5.02 -54.93 -0.28 -14.81 16 14 C 0.50 9.56 6.40 -10.99 -0.07 9.49 16 15 O -0.55 -12.47 13.12 5.56 0.07 -12.39 16 16 C -0.14 -1.90 5.68 -27.89 -0.16 -2.06 16 17 C -0.07 -0.87 4.63 -27.88 -0.13 -0.99 16 18 C -0.04 -0.43 5.13 -104.64 -0.54 -0.96 16 19 C -0.15 -1.66 9.70 -39.56 -0.38 -2.04 16 20 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 21 C -0.22 -2.14 9.04 -39.43 -0.36 -2.49 16 22 C 0.13 1.44 6.69 -39.22 -0.26 1.18 16 23 O -0.32 -3.46 10.50 -19.44 -0.20 -3.67 16 24 C 0.03 0.19 9.81 101.05 0.99 1.18 16 25 C -0.15 -1.81 9.64 -39.43 -0.38 -2.19 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 32 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 36 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 37 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.92 6.30 -52.49 -0.33 0.59 16 40 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 41 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.30 7.67 -51.93 -0.40 -0.10 16 43 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -30.96 351.97 -8.20 -39.15 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.64 Total: 7.11 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -2.06 Total: -12.15 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.35 Total: -39.00 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.13 Total: -16.06 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.96 -8.20 -39.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183958892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.799 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds