Wall clock time and date at job start Tue Mar 31 2020 06:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46986 * 2 1 4 4 H 1.08999 * 109.47152 * 304.99846 * 3 2 1 5 5 C 1.50702 * 109.47147 * 185.00069 * 3 2 1 6 6 H 1.08004 * 119.99917 * 239.99967 * 5 3 2 7 7 C 1.37878 * 120.00499 * 60.00049 * 5 3 2 8 8 N 1.31517 * 119.99308 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00227 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46867 * 90.00048 * 9 7 5 11 11 H 1.48500 * 109.47122 * 209.99591 * 9 7 5 12 12 H 1.48496 * 109.47238 * 329.99693 * 9 7 5 13 13 N 1.46502 * 109.47453 * 64.99963 * 3 2 1 14 14 C 1.34780 * 119.99785 * 275.00557 * 13 3 2 15 15 O 1.21280 * 119.99632 * 359.97438 * 14 13 3 16 16 C 1.50695 * 119.99896 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47067 * 179.97438 * 16 14 13 18 18 C 1.50703 * 109.47070 * 179.97438 * 17 16 14 19 19 C 1.38291 * 119.97179 * 270.02311 * 18 17 16 20 20 C 1.38246 * 120.11138 * 180.02562 * 19 18 17 21 21 C 1.38169 * 120.05567 * 359.67999 * 20 19 18 22 22 C 1.38709 * 119.93966 * 0.57015 * 21 20 19 23 23 O 1.35905 * 120.05570 * 179.72312 * 22 21 20 24 24 C 1.42901 * 116.99604 * 359.72908 * 23 22 21 25 25 C 1.38119 * 119.97324 * 90.00054 * 18 17 16 26 26 H 1.09007 * 109.46701 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47344 * 300.00195 * 1 2 3 28 28 H 1.08998 * 109.47080 * 60.00344 * 1 2 3 29 29 H 1.09004 * 109.47423 * 240.00084 * 2 1 3 30 30 H 1.09005 * 109.47437 * 119.99656 * 2 1 3 31 31 H 0.97005 * 119.99927 * 180.02562 * 8 7 5 32 32 H 0.96994 * 119.99955 * 94.99421 * 13 3 2 33 33 H 1.09005 * 109.47401 * 59.99280 * 16 14 13 34 34 H 1.09001 * 109.47049 * 299.99448 * 16 14 13 35 35 H 1.09001 * 109.47011 * 60.00275 * 17 16 14 36 36 H 1.08994 * 109.47317 * 299.99570 * 17 16 14 37 37 H 1.08002 * 119.94189 * 359.97438 * 19 18 17 38 38 H 1.07998 * 119.97048 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.02712 * 180.29728 * 21 20 19 40 40 H 1.08999 * 109.47144 * 59.99795 * 24 23 22 41 41 H 1.08995 * 109.47253 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47352 * 299.99771 * 24 23 22 43 43 H 1.08006 * 120.02943 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0050 0.8802 -1.3811 10 1 6.5538 -0.3519 -0.7597 11 1 6.3836 0.9216 -2.8164 12 1 6.5575 2.0721 -0.6888 13 7 1.6524 2.0976 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3394 2.6325 0.4340 16 6 0.0361 3.3377 2.6547 17 6 -1.3826 3.8945 2.5209 18 6 -1.7818 4.5673 3.8090 19 6 -2.4092 3.8391 4.8032 20 6 -2.7771 4.4534 5.9858 21 6 -2.5126 5.7957 6.1797 22 6 -1.8881 6.5294 5.1819 23 8 -1.6320 7.8511 5.3679 24 6 -2.0385 8.4216 6.6134 25 6 -1.5203 5.9106 3.9957 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8293 -0.0618 -2.9495 32 1 2.2718 2.1232 1.9977 33 1 0.7275 4.1530 2.8678 34 1 0.0671 2.6130 3.4684 35 1 -2.0742 3.0794 2.3077 36 1 -1.4133 4.6192 1.7074 37 1 -2.6129 2.7888 4.6553 38 1 -3.2673 3.8827 6.7605 39 1 -2.7959 6.2740 7.1056 40 1 -1.5331 7.9074 7.4308 41 1 -1.7752 9.4791 6.6319 42 1 -3.1171 8.3134 6.7279 43 1 -1.0303 6.4789 3.2189 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183958892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:52 Heat of formation + Delta-G solvation = -88.521620 kcal Electronic energy + Delta-G solvation = -22575.540418 eV Core-core repulsion = 19198.545872 eV Total energy + Delta-G solvation = -3376.994546 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14124 -40.59562 -38.63043 -36.95962 -34.65579 -34.24703 -32.78062 -31.55400 -30.38943 -28.86091 -28.08175 -25.78541 -24.65167 -23.43857 -22.18218 -21.51174 -20.96926 -18.91115 -18.60863 -17.31341 -17.27219 -17.12970 -16.92653 -16.61250 -16.45268 -16.03531 -15.29516 -14.82567 -14.74438 -14.58503 -14.26369 -14.05351 -13.75720 -13.53425 -13.26420 -13.15612 -12.98963 -12.81841 -12.75085 -12.65047 -12.40980 -12.16062 -12.07817 -11.89917 -11.86797 -11.64986 -11.56024 -11.02692 -10.62603 -10.47373 -9.74857 -9.56411 -9.12655 -8.15010 -6.32194 0.36387 0.51808 1.44680 1.45432 1.55800 1.94633 2.36694 2.40244 2.68412 2.88385 3.14264 3.79613 3.91058 4.07651 4.11876 4.23041 4.33869 4.38250 4.41432 4.49840 4.51629 4.57995 4.60168 4.67517 4.71266 4.75294 4.82171 5.00312 5.09537 5.10915 5.23384 5.29462 5.37284 5.46964 5.52351 5.58642 5.67562 5.72291 5.82814 5.86337 5.96913 6.19991 6.49454 6.76933 7.06672 7.35592 7.66979 8.90228 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.002850 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.308937 B = 9820.495436 C =10531.673245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.121 4.121 3 C 0.277 3.723 4 H -0.004 1.004 5 C -0.548 4.548 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.709 5.709 14 C 0.496 3.504 15 O -0.589 6.589 16 C -0.121 4.121 17 C -0.058 4.058 18 C -0.043 4.043 19 C -0.160 4.160 20 C -0.078 4.078 21 C -0.214 4.214 22 C 0.114 3.886 23 O -0.341 6.341 24 C 0.019 3.981 25 C -0.168 4.168 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.264 0.736 32 H 0.403 0.597 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.066 0.934 41 H 0.115 0.885 42 H 0.065 0.935 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.420 10.322 20.857 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.173 3.827 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.358 5.358 14 C 0.283 3.717 15 O -0.471 6.471 16 C -0.160 4.160 17 C -0.096 4.096 18 C -0.043 4.043 19 C -0.178 4.178 20 C -0.095 4.095 21 C -0.233 4.233 22 C 0.069 3.931 23 O -0.255 6.255 24 C -0.075 4.075 25 C -0.187 4.187 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.238 0.762 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.154 0.846 38 H 0.170 0.830 39 H 0.167 0.833 40 H 0.084 0.916 41 H 0.133 0.867 42 H 0.084 0.916 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.842 10.353 19.894 24.910 hybrid contribution 1.100 -0.068 -0.272 1.135 sum -9.742 10.285 19.623 24.202 Atomic orbital electron populations 1.21669 0.96861 0.99086 1.00352 1.21779 0.93870 0.99187 1.01174 1.18342 0.93487 0.89210 0.81662 0.98580 1.21605 0.91615 1.38764 1.06602 0.91153 1.25776 1.03274 0.94468 0.95063 1.70056 1.37012 1.38425 1.09909 0.85384 0.79222 0.78851 0.77113 1.19658 1.21311 1.18956 1.46303 1.15846 1.56202 1.17434 1.21268 0.81573 0.78380 0.90450 1.90652 1.52453 1.61284 1.42717 1.21602 0.97981 1.01761 0.94682 1.20218 0.95434 1.00019 0.93886 1.19648 0.96530 0.92576 0.95592 1.21236 1.01660 1.00924 0.94017 1.21264 0.97053 0.93973 0.97246 1.21503 1.05575 0.96045 1.00159 1.19169 0.95828 0.83461 0.94653 1.86053 1.78136 1.21136 1.40178 1.23327 1.00790 1.00001 0.83410 1.20429 1.06151 0.94895 0.97242 0.93663 0.93429 0.95712 0.91215 0.94085 0.92657 0.76238 0.87760 0.86819 0.90580 0.91701 0.84571 0.83022 0.83263 0.91575 0.86666 0.91609 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.51 71.98 0.61 -4.91 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.25 2.24 44.25 0.10 14.35 16 4 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 5 C -0.55 -29.15 8.73 25.60 0.22 -28.93 16 6 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 7 C 0.01 0.77 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.85 11.29 21.45 0.24 -52.61 16 9 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 13 N -0.71 -28.95 5.02 -446.09 -2.24 -31.19 16 14 C 0.50 18.99 6.40 87.65 0.56 19.55 16 15 O -0.59 -27.49 13.12 -3.03 -0.04 -27.52 16 16 C -0.12 -3.20 5.68 29.84 0.17 -3.03 16 17 C -0.06 -1.52 4.63 29.85 0.14 -1.39 16 18 C -0.04 -1.00 5.13 -19.88 -0.10 -1.10 16 19 C -0.16 -3.11 9.70 22.28 0.22 -2.89 16 20 C -0.08 -1.25 10.04 22.26 0.22 -1.03 16 21 C -0.21 -3.62 9.04 22.37 0.20 -3.42 16 22 C 0.11 2.46 6.69 22.51 0.15 2.61 16 23 O -0.34 -7.01 10.50 -92.48 -0.97 -7.98 16 24 C 0.02 0.20 9.81 113.37 1.11 1.32 16 25 C -0.17 -4.04 9.64 22.37 0.22 -3.83 16 26 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 27 H 0.05 2.03 5.64 -2.39 -0.01 2.02 16 28 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 29 H 0.07 3.88 5.95 -2.38 -0.01 3.87 16 30 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 32 H 0.40 13.90 8.54 -92.71 -0.79 13.11 16 33 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 34 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 36 H 0.06 1.91 8.04 -2.39 -0.02 1.89 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 39 H 0.15 1.67 6.30 -2.91 -0.02 1.65 16 40 H 0.07 0.56 7.65 -2.39 -0.02 0.54 16 41 H 0.12 0.81 8.14 -2.39 -0.02 0.80 16 42 H 0.07 0.55 7.67 -2.39 -0.02 0.53 16 43 H 0.12 3.00 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -68.98 351.97 3.67 -65.31 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.21 Total: 26.92 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 4.44 Total: -17.31 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -2.00 Total: -83.80 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.01 Total: -35.51 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -68.98 3.67 -65.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183958892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.211 kcal (2) G-P(sol) polarization free energy of solvation -68.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds