Wall clock time and date at job start Tue Mar 31 2020 06:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99770 * 3 2 1 6 6 H 1.07998 * 119.99629 * 120.00096 * 5 3 2 7 7 C 1.37875 * 119.99955 * 300.00667 * 5 3 2 8 8 N 1.31514 * 120.00140 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00134 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47035 * 90.00481 * 9 7 5 11 11 H 1.48500 * 109.47034 * 210.00652 * 9 7 5 12 12 H 1.48497 * 109.46869 * 330.00190 * 9 7 5 13 13 N 1.46500 * 109.47473 * 295.00136 * 3 2 1 14 14 C 1.34768 * 120.00056 * 84.99704 * 13 3 2 15 15 O 1.21588 * 120.00059 * 0.02562 * 14 13 3 16 16 C 1.47605 * 120.00089 * 180.02562 * 14 13 3 17 17 C 1.39730 * 120.08418 * 359.72123 * 16 14 13 18 18 C 1.37702 * 119.90815 * 179.79086 * 17 16 14 19 19 C 1.50696 * 119.95780 * 180.23469 * 18 17 16 20 20 C 1.39003 * 120.09006 * 0.48810 * 18 17 16 21 21 O 1.35707 * 119.91554 * 179.76547 * 20 18 17 22 22 C 1.42901 * 116.99915 * 269.98289 * 21 20 18 23 23 C 1.38996 * 120.17417 * 359.74221 * 20 18 17 24 24 C 1.50703 * 119.95652 * 179.97438 * 23 20 18 25 25 C 1.37706 * 120.08537 * 0.02562 * 23 20 18 26 26 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 27 27 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 30 30 H 1.08998 * 109.47250 * 120.00119 * 2 1 3 31 31 H 0.96998 * 120.00084 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99547 * 264.99875 * 13 3 2 33 33 H 1.07991 * 120.04979 * 0.02615 * 17 16 14 34 34 H 1.09008 * 109.47533 * 270.25516 * 19 18 17 35 35 H 1.08998 * 109.47399 * 30.25509 * 19 18 17 36 36 H 1.08998 * 109.47802 * 150.25872 * 19 18 17 37 37 H 1.08995 * 109.47620 * 60.00040 * 22 21 20 38 38 H 1.09006 * 109.46757 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.46762 * 299.99466 * 22 21 20 40 40 H 1.08993 * 109.47182 * 270.02585 * 24 23 20 41 41 H 1.09003 * 109.46600 * 30.02840 * 24 23 20 42 42 H 1.08996 * 109.47100 * 150.02400 * 24 23 20 43 43 H 1.08006 * 120.03892 * 179.97438 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8795 1.3359 9 14 3.0963 0.1098 2.5707 10 1 2.8746 -1.3262 2.2645 11 1 3.7940 0.2358 3.8755 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4317 16 6 0.0445 3.3239 -2.6283 17 6 0.9375 3.3666 -3.7022 18 6 0.5676 3.9791 -4.8787 19 6 1.5278 4.0212 -6.0394 20 6 -0.6883 4.5631 -4.9955 21 8 -1.0474 5.1699 -6.1551 22 6 -0.7471 6.5615 -6.2791 23 6 -1.5777 4.5269 -3.9280 24 6 -2.9379 5.1623 -4.0598 25 6 -1.2171 3.9122 -2.7497 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8770 0.4816 2.1128 32 1 2.2720 2.1232 -1.9977 33 1 1.9149 2.9167 -3.6109 34 1 2.1405 4.9202 -5.9718 35 1 2.1701 3.1409 -6.0118 36 1 0.9676 4.0329 -6.9743 37 1 0.3291 6.7103 -6.1918 38 1 -1.0856 6.9210 -7.2509 39 1 -1.2556 7.1146 -5.4895 40 1 -2.8844 6.2041 -3.7442 41 1 -3.2623 5.1136 -5.0992 42 1 -3.6507 4.6284 -3.4313 43 1 -1.9086 3.8849 -1.9204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183973958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:36 Heat of formation + Delta-G solvation = -57.388928 kcal Electronic energy + Delta-G solvation = -23527.456044 eV Core-core repulsion = 20151.811513 eV Total energy + Delta-G solvation = -3375.644531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52639 -39.16441 -37.11422 -35.32075 -33.80426 -32.49649 -31.90316 -30.80832 -28.23017 -27.64388 -26.66325 -26.31384 -23.51194 -22.51028 -21.08716 -20.44339 -19.57663 -17.78138 -17.53895 -16.67798 -16.15281 -15.85168 -15.46471 -14.82042 -14.42858 -14.14241 -14.02905 -13.69471 -13.55747 -13.34783 -13.17101 -13.13001 -12.84915 -12.42629 -12.40679 -12.05170 -11.95868 -11.82257 -11.62997 -11.47241 -11.31120 -11.05605 -10.90092 -10.62612 -10.11018 -9.92851 -9.58942 -9.25220 -9.19432 -8.76631 -8.71882 -8.58305 -8.06626 -6.22046 -4.24725 0.77242 1.25801 2.92800 3.23320 3.35236 3.40448 3.62080 3.89088 4.03711 4.31038 4.59948 4.66617 4.98107 5.01828 5.05032 5.11717 5.23069 5.24376 5.27903 5.36290 5.43423 5.48232 5.51210 5.62546 5.70753 5.90972 5.97548 6.03352 6.07928 6.17203 6.25962 6.35766 6.40911 6.58192 6.66927 6.70701 6.84288 6.96846 7.25576 7.28832 7.34573 7.49853 8.13596 8.50122 8.74220 8.90144 9.38676 10.89951 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.003915 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.539497 B = 7150.403685 C = 7827.809112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.693 5.693 14 C 0.545 3.455 15 O -0.546 6.546 16 C -0.119 4.119 17 C -0.081 4.081 18 C -0.107 4.107 19 C -0.112 4.112 20 C 0.105 3.895 21 O -0.334 6.334 22 C 0.036 3.964 23 C -0.110 4.110 24 C -0.110 4.110 25 C -0.058 4.058 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.394 0.606 33 H 0.134 0.866 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.932 8.576 -14.931 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.341 5.341 14 C 0.331 3.669 15 O -0.426 6.426 16 C -0.122 4.122 17 C -0.100 4.100 18 C -0.107 4.107 19 C -0.168 4.168 20 C 0.061 3.939 21 O -0.251 6.251 22 C -0.058 4.058 23 C -0.111 4.111 24 C -0.166 4.166 25 C -0.077 4.077 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.369 8.409 -14.281 20.679 hybrid contribution 0.135 -0.384 0.558 0.691 sum -12.234 8.025 -13.722 20.059 Atomic orbital electron populations 1.21882 0.96911 0.99087 1.02302 1.22286 0.94408 0.99860 1.01158 1.19188 0.95692 0.88552 0.82692 0.93152 1.21041 0.88546 1.39886 1.07918 0.90197 1.24824 0.94867 0.95097 0.97652 1.69864 1.08687 1.44475 1.29826 0.86904 0.80995 0.79986 0.80883 1.20198 1.22149 1.18416 1.46127 1.14576 1.55382 1.18030 1.18097 0.82763 0.79159 0.86901 1.90741 1.51604 1.60252 1.39983 1.20255 0.95454 1.01568 0.94953 1.21187 0.99300 0.97923 0.91574 1.20064 0.94354 1.00146 0.96158 1.20709 0.97648 1.02626 0.95847 1.18498 0.92142 0.97382 0.85891 1.85900 1.81485 1.23499 1.34190 1.22975 1.00409 0.80071 1.02385 1.20097 0.97354 1.00879 0.92755 1.20687 0.92674 1.00141 1.03140 1.21044 0.95429 0.94534 0.96694 0.92834 0.92911 0.94927 0.92254 0.92709 0.92266 0.77161 0.84831 0.91302 0.91013 0.90921 0.93445 0.88893 0.93513 0.91415 0.90918 0.91170 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.14 -3.09 5.11 -26.73 -0.14 -3.23 16 3 C 0.24 5.75 1.83 -69.08 -0.13 5.62 16 4 H 0.05 1.32 6.63 -51.93 -0.34 0.98 16 5 C -0.54 -14.41 9.31 -34.44 -0.32 -14.73 16 6 H 0.08 2.25 7.98 -52.49 -0.42 1.83 16 7 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -26.29 13.96 55.43 0.77 -25.52 16 9 Si 0.88 21.71 24.41 -169.99 -4.15 17.56 16 10 H -0.28 -6.56 6.83 56.52 0.39 -6.18 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.69 -13.91 4.97 -55.95 -0.28 -14.18 16 14 C 0.54 10.56 6.33 -12.44 -0.08 10.48 16 15 O -0.55 -12.07 13.47 5.29 0.07 -12.00 16 16 C -0.12 -1.89 5.87 -104.96 -0.62 -2.51 16 17 C -0.08 -1.11 9.18 -39.22 -0.36 -1.47 16 18 C -0.11 -1.31 5.89 -104.54 -0.62 -1.93 16 19 C -0.11 -1.08 9.78 36.00 0.35 -0.73 16 20 C 0.10 1.29 5.67 -39.02 -0.22 1.07 16 21 O -0.33 -3.64 8.47 -18.83 -0.16 -3.80 16 22 C 0.04 0.27 11.13 101.05 1.12 1.40 16 23 C -0.11 -1.38 5.89 -104.53 -0.62 -1.99 16 24 C -0.11 -1.06 9.78 36.01 0.35 -0.71 16 25 C -0.06 -0.84 9.23 -39.22 -0.36 -1.20 16 26 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 27 H 0.05 1.06 5.64 -51.93 -0.29 0.77 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 1.28 3.22 -51.93 -0.17 1.11 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.39 6.99 6.56 -40.82 -0.27 6.72 16 33 H 0.13 1.66 6.39 -52.49 -0.34 1.32 16 34 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 35 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 36 H 0.07 0.68 7.52 -51.93 -0.39 0.28 16 37 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.67 7.52 -51.93 -0.39 0.28 16 42 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 43 H 0.14 2.00 7.64 -52.48 -0.40 1.60 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -31.41 343.16 -6.37 -37.78 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.40 Total: 5.42 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.40 Total: -10.43 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.50 Total: -39.70 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.09 Total: -15.80 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.15 Total: 17.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.41 -6.37 -37.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183973958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.605 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds