Wall clock time and date at job start Tue Mar 31 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.46832 * 55.00084 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99770 * 3 2 1 6 6 H 1.07998 * 119.99629 * 120.00096 * 5 3 2 7 7 C 1.37875 * 119.99955 * 300.00667 * 5 3 2 8 8 N 1.31514 * 120.00140 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 120.00134 * 359.97438 * 7 5 3 10 10 H 1.48493 * 109.47035 * 90.00481 * 9 7 5 11 11 H 1.48500 * 109.47034 * 210.00652 * 9 7 5 12 12 H 1.48497 * 109.46869 * 330.00190 * 9 7 5 13 13 N 1.46500 * 109.47473 * 295.00136 * 3 2 1 14 14 C 1.34768 * 120.00056 * 84.99704 * 13 3 2 15 15 O 1.21588 * 120.00059 * 0.02562 * 14 13 3 16 16 C 1.47605 * 120.00089 * 180.02562 * 14 13 3 17 17 C 1.39730 * 120.08418 * 359.72123 * 16 14 13 18 18 C 1.37702 * 119.90815 * 179.79086 * 17 16 14 19 19 C 1.50696 * 119.95780 * 180.23469 * 18 17 16 20 20 C 1.39003 * 120.09006 * 0.48810 * 18 17 16 21 21 O 1.35707 * 119.91554 * 179.76547 * 20 18 17 22 22 C 1.42901 * 116.99915 * 269.98289 * 21 20 18 23 23 C 1.38996 * 120.17417 * 359.74221 * 20 18 17 24 24 C 1.50703 * 119.95652 * 179.97438 * 23 20 18 25 25 C 1.37706 * 120.08537 * 0.02562 * 23 20 18 26 26 H 1.08998 * 109.47252 * 299.99805 * 1 2 3 27 27 H 1.08998 * 109.47250 * 59.99881 * 1 2 3 28 28 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47252 * 240.00195 * 2 1 3 30 30 H 1.08998 * 109.47250 * 120.00119 * 2 1 3 31 31 H 0.96998 * 120.00084 * 179.97438 * 8 7 5 32 32 H 0.97001 * 119.99547 * 264.99875 * 13 3 2 33 33 H 1.07991 * 120.04979 * 0.02615 * 17 16 14 34 34 H 1.09008 * 109.47533 * 270.25516 * 19 18 17 35 35 H 1.08998 * 109.47399 * 30.25509 * 19 18 17 36 36 H 1.08998 * 109.47802 * 150.25872 * 19 18 17 37 37 H 1.08995 * 109.47620 * 60.00040 * 22 21 20 38 38 H 1.09006 * 109.46757 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.46762 * 299.99466 * 22 21 20 40 40 H 1.08993 * 109.47182 * 270.02585 * 24 23 20 41 41 H 1.09003 * 109.46600 * 30.02840 * 24 23 20 42 42 H 1.08996 * 109.47100 * 150.02400 * 24 23 20 43 43 H 1.08006 * 120.03892 * 179.97438 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8795 1.3359 9 14 3.0963 0.1098 2.5707 10 1 2.8746 -1.3262 2.2645 11 1 3.7940 0.2358 3.8755 12 1 1.7881 0.8091 2.6394 13 7 1.6524 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3412 2.6325 -0.4317 16 6 0.0445 3.3239 -2.6283 17 6 0.9375 3.3666 -3.7022 18 6 0.5676 3.9791 -4.8787 19 6 1.5278 4.0212 -6.0394 20 6 -0.6883 4.5631 -4.9955 21 8 -1.0474 5.1699 -6.1551 22 6 -0.7471 6.5615 -6.2791 23 6 -1.5777 4.5269 -3.9280 24 6 -2.9379 5.1623 -4.0598 25 6 -1.2171 3.9122 -2.7497 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8770 0.4816 2.1128 32 1 2.2720 2.1232 -1.9977 33 1 1.9149 2.9167 -3.6109 34 1 2.1405 4.9202 -5.9718 35 1 2.1701 3.1409 -6.0118 36 1 0.9676 4.0329 -6.9743 37 1 0.3291 6.7103 -6.1918 38 1 -1.0856 6.9210 -7.2509 39 1 -1.2556 7.1146 -5.4895 40 1 -2.8844 6.2041 -3.7442 41 1 -3.2623 5.1136 -5.0992 42 1 -3.6507 4.6284 -3.4313 43 1 -1.9086 3.8849 -1.9204 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183973958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:35 Heat of formation + Delta-G solvation = -77.333819 kcal Electronic energy + Delta-G solvation = -23528.320920 eV Core-core repulsion = 20151.811513 eV Total energy + Delta-G solvation = -3376.509407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62470 -40.53711 -38.15937 -37.06828 -34.81240 -34.34960 -33.52035 -32.04495 -29.48934 -28.94594 -27.63022 -27.19335 -25.01425 -24.16947 -22.26852 -21.83206 -21.16185 -19.22336 -18.70365 -17.90728 -17.85410 -17.07626 -16.66250 -16.35558 -16.14974 -15.32351 -15.05393 -14.97239 -14.79888 -14.52703 -14.20103 -14.10764 -14.05667 -13.95393 -13.74319 -13.63518 -13.12745 -12.99912 -12.81571 -12.78487 -12.54500 -12.43918 -12.36550 -12.20412 -11.86672 -11.40766 -11.25778 -10.92651 -10.88373 -10.80720 -9.88552 -9.70429 -9.54226 -8.38976 -6.44772 -0.32088 0.24804 1.26747 1.34935 1.44875 1.73919 2.25506 2.37396 2.57587 2.91550 2.97312 3.69049 3.71285 3.77796 4.15387 4.21763 4.27877 4.30300 4.37211 4.44800 4.47139 4.50822 4.61639 4.65409 4.75450 4.77254 4.78509 4.83042 4.85453 4.98370 5.09561 5.12474 5.19104 5.24941 5.30568 5.33602 5.38325 5.43080 5.50025 5.58414 5.63756 6.12920 6.48619 6.56216 6.81924 7.17395 7.37925 8.76089 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.025787 B = 0.003915 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.539497 B = 7150.403685 C = 7827.809112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.249 3.751 4 H 0.024 0.976 5 C -0.535 4.535 6 H 0.057 0.943 7 C 0.032 3.968 8 N -0.932 5.932 9 Si 0.935 3.065 10 H -0.259 1.259 11 H -0.292 1.292 12 H -0.261 1.261 13 N -0.694 5.694 14 C 0.547 3.453 15 O -0.578 6.578 16 C -0.142 4.142 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.110 4.110 20 C 0.111 3.889 21 O -0.341 6.341 22 C 0.029 3.971 23 C -0.112 4.112 24 C -0.107 4.107 25 C -0.065 4.065 26 H 0.038 0.962 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.271 0.729 32 H 0.404 0.596 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.118 0.882 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.375 8.957 -16.739 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.176 4.176 3 C 0.145 3.855 4 H 0.042 0.958 5 C -0.573 4.573 6 H 0.075 0.925 7 C -0.168 4.168 8 N -0.571 5.571 9 Si 0.762 3.238 10 H -0.184 1.184 11 H -0.220 1.220 12 H -0.185 1.185 13 N -0.343 5.343 14 C 0.335 3.665 15 O -0.460 6.460 16 C -0.145 4.145 17 C -0.101 4.101 18 C -0.110 4.110 19 C -0.166 4.166 20 C 0.067 3.933 21 O -0.258 6.258 22 C -0.065 4.065 23 C -0.113 4.113 24 C -0.164 4.164 25 C -0.085 4.085 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.240 0.760 33 H 0.159 0.841 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.136 0.864 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.817 8.800 -16.125 22.986 hybrid contribution 0.573 -0.356 0.958 1.172 sum -13.245 8.443 -15.167 21.834 Atomic orbital electron populations 1.21766 0.95281 1.00618 1.01523 1.22209 0.95804 0.98384 1.01170 1.18837 0.93399 0.89712 0.83570 0.95813 1.21265 0.90170 1.38763 1.07116 0.92472 1.25520 0.95734 0.95785 0.99765 1.69968 1.10221 1.46040 1.30853 0.86055 0.79329 0.80024 0.78379 1.18424 1.21965 1.18529 1.45948 1.15424 1.55707 1.17203 1.18577 0.81812 0.78312 0.87798 1.90712 1.52362 1.61430 1.41499 1.19986 0.96894 1.03614 0.93982 1.21263 0.99234 0.98030 0.91535 1.20342 0.95005 0.99287 0.96362 1.20763 0.97369 1.03628 0.94840 1.18653 0.91861 0.96645 0.86128 1.85880 1.81543 1.25207 1.33154 1.23237 1.01002 0.78146 1.04069 1.20347 0.98680 1.00257 0.91975 1.20740 0.91066 1.00761 1.03818 1.21058 0.94880 0.95036 0.97477 0.94302 0.93039 0.92142 0.91263 0.93563 0.92023 0.75951 0.84122 0.89983 0.90323 0.90250 0.92997 0.86364 0.92998 0.89965 0.90141 0.90634 0.84943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.34 8.51 71.98 0.61 -4.73 16 2 C -0.14 -6.02 5.11 30.59 0.16 -5.86 16 3 C 0.25 11.96 1.83 44.25 0.08 12.05 16 4 H 0.02 1.28 6.63 -2.39 -0.02 1.26 16 5 C -0.54 -29.33 9.31 25.60 0.24 -29.09 16 6 H 0.06 3.32 7.98 -2.91 -0.02 3.29 16 7 C 0.03 1.81 5.45 84.65 0.46 2.27 16 8 N -0.93 -55.88 13.96 21.45 0.30 -55.58 16 9 Si 0.93 44.92 24.41 68.60 1.67 46.59 16 10 H -0.26 -11.66 6.83 99.48 0.68 -10.99 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 12 H -0.26 -12.48 6.53 99.48 0.65 -11.83 16 13 N -0.69 -28.16 4.97 -449.20 -2.23 -30.39 16 14 C 0.55 21.45 6.33 86.72 0.55 21.99 16 15 O -0.58 -26.04 13.47 -3.99 -0.05 -26.09 16 16 C -0.14 -4.47 5.87 -20.08 -0.12 -4.59 16 17 C -0.08 -2.16 9.18 22.50 0.21 -1.96 16 18 C -0.11 -2.49 5.89 -19.81 -0.12 -2.61 16 19 C -0.11 -1.84 9.78 71.23 0.70 -1.15 16 20 C 0.11 2.51 5.67 22.64 0.13 2.64 16 21 O -0.34 -6.44 8.47 -90.28 -0.76 -7.21 16 22 C 0.03 0.35 11.13 113.37 1.26 1.61 16 23 C -0.11 -2.62 5.89 -19.81 -0.12 -2.74 16 24 C -0.11 -1.83 9.78 71.24 0.70 -1.13 16 25 C -0.07 -1.86 9.23 22.50 0.21 -1.65 16 26 H 0.04 1.63 7.84 -2.39 -0.02 1.61 16 27 H 0.05 2.04 5.64 -2.39 -0.01 2.03 16 28 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 30 H 0.05 2.10 3.22 -2.39 -0.01 2.10 16 31 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.40 14.50 6.56 -92.71 -0.61 13.89 16 33 H 0.14 3.39 6.39 -2.92 -0.02 3.37 16 34 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 36 H 0.08 1.25 7.52 -2.39 -0.02 1.23 16 37 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 38 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 39 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.26 7.52 -2.39 -0.02 1.24 16 42 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 43 H 0.13 3.86 7.64 -2.91 -0.02 3.83 16 Total: -1.00 -67.93 343.16 4.19 -63.74 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.33 Total: 23.88 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: 4.95 Total: -14.95 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -1.93 Total: -85.97 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.82 Total: -33.30 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.67 Total: 46.59 kcal Total: -67.93 4.19 -63.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183973958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.595 kcal (2) G-P(sol) polarization free energy of solvation -67.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds