Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46789 * 2 1 4 4 H 1.09003 * 109.47405 * 55.00059 * 3 2 1 5 5 C 1.50693 * 109.47138 * 175.00056 * 3 2 1 6 6 H 1.08001 * 120.00048 * 119.99896 * 5 3 2 7 7 C 1.37880 * 120.00140 * 299.99892 * 5 3 2 8 8 N 1.31517 * 119.99912 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46777 * 60.00449 * 9 7 5 11 11 H 1.48505 * 109.47014 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47519 * 300.00584 * 9 7 5 13 13 N 1.46505 * 109.47133 * 294.99934 * 3 2 1 14 14 C 1.34778 * 119.99823 * 85.00142 * 13 3 2 15 15 O 1.21285 * 120.00058 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99902 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.46862 * 55.00694 * 16 14 13 18 18 C 1.52997 * 109.47466 * 295.00139 * 16 14 13 19 19 O 1.42905 * 109.46996 * 174.99831 * 16 14 13 20 20 C 1.42900 * 114.00074 * 210.00118 * 19 16 14 21 21 C 1.50698 * 109.47265 * 180.02562 * 20 19 16 22 22 C 1.38236 * 120.00002 * 269.72788 * 21 20 19 23 23 C 1.38232 * 119.99568 * 179.76621 * 22 21 20 24 24 C 1.38236 * 120.00381 * 0.50487 * 23 22 21 25 25 C 1.38238 * 119.99646 * 359.74839 * 24 23 22 26 26 C 1.38234 * 120.00287 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.46592 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47357 * 299.99715 * 1 2 3 29 29 H 1.09002 * 109.47339 * 60.00427 * 1 2 3 30 30 H 1.08999 * 109.47071 * 240.00231 * 2 1 3 31 31 H 1.08997 * 109.47293 * 120.00067 * 2 1 3 32 32 H 0.96996 * 120.00373 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99951 * 264.99502 * 13 3 2 34 34 H 1.09002 * 109.47153 * 59.99773 * 18 16 14 35 35 H 1.09001 * 109.46832 * 299.99964 * 18 16 14 36 36 H 1.09004 * 109.47261 * 179.97438 * 18 16 14 37 37 H 1.09004 * 109.47253 * 300.00831 * 20 19 16 38 38 H 1.09003 * 109.46979 * 59.99699 * 20 19 16 39 39 H 1.08001 * 119.99799 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.99878 * 180.23406 * 23 22 21 41 41 H 1.07996 * 120.00173 * 179.72157 * 24 23 22 42 42 H 1.08003 * 119.99901 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00087 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8803 1.3811 10 1 6.5003 2.2803 1.3808 11 1 6.3978 0.2170 2.6504 12 1 6.5967 0.1456 0.2343 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6318 -0.4344 16 6 0.0365 3.3386 -2.6544 17 1 0.1530 2.6390 -3.4821 18 6 0.9291 4.5589 -2.8887 19 8 -1.3279 3.7552 -2.5714 20 6 -2.0088 3.7693 -3.8277 21 6 -3.4315 4.2220 -3.6230 22 6 -4.4221 3.2931 -3.3647 23 6 -5.7262 3.7090 -3.1721 24 6 -6.0417 5.0527 -3.2482 25 6 -5.0519 5.9811 -3.5117 26 6 -3.7469 5.5658 -3.6997 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8293 -0.0611 2.9498 33 1 2.2719 2.1233 -1.9978 34 1 1.9698 4.2411 -2.9519 35 1 0.8125 5.2585 -2.0609 36 1 0.6411 5.0463 -3.8202 37 1 -1.5036 4.4557 -4.5072 38 1 -2.0041 2.7664 -4.2548 39 1 -4.1764 2.2428 -3.3100 40 1 -6.4995 2.9836 -2.9666 41 1 -7.0614 5.3771 -3.1022 42 1 -5.2984 7.0309 -3.5716 43 1 -2.9738 6.2911 -3.9060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186001093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -66.910154 kcal Electronic energy + Delta-G solvation = -23047.502710 eV Core-core repulsion = 19671.445307 eV Total energy + Delta-G solvation = -3376.057403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.66164 -39.09597 -37.30719 -34.91996 -32.79921 -32.20983 -31.21819 -31.01328 -30.06363 -26.95536 -26.22860 -24.00934 -22.76484 -22.68008 -21.43069 -20.24062 -19.27379 -17.50705 -17.03309 -16.56806 -15.85177 -15.71470 -15.21576 -15.14837 -14.73707 -14.31725 -13.98631 -13.65878 -13.48925 -13.19644 -12.97994 -12.66021 -12.51270 -12.33580 -12.07194 -11.86768 -11.42917 -11.31482 -11.22501 -11.12013 -11.00882 -10.90414 -10.80038 -10.30978 -10.16743 -9.73011 -9.60586 -9.04983 -9.02464 -8.97978 -8.72540 -8.47591 -7.79284 -6.11232 -4.20916 1.14913 1.29892 3.25537 3.29337 3.31379 3.35223 3.42085 3.85061 4.29585 4.44324 4.68888 4.77920 4.88775 4.97861 5.03541 5.12979 5.19627 5.23396 5.28177 5.40241 5.43883 5.53262 5.70597 5.82951 5.84609 5.92476 6.21288 6.32202 6.37851 6.41568 6.48470 6.49590 6.68761 6.86493 7.05795 7.13225 7.25792 7.39602 7.47899 7.63611 7.76115 7.92206 8.19605 8.68526 8.79779 9.17342 9.46535 10.94042 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031374 B = 0.003099 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.258521 B = 9031.617506 C = 9555.442453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.527 6.527 16 C 0.067 3.933 17 H 0.078 0.922 18 C -0.168 4.168 19 O -0.348 6.348 20 C 0.099 3.901 21 C -0.085 4.085 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.098 4.098 27 H 0.022 0.978 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.057 0.943 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.969 7.399 -14.795 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.403 6.403 16 C 0.005 3.995 17 H 0.096 0.904 18 C -0.226 4.226 19 O -0.266 6.266 20 C 0.022 3.978 21 C -0.085 4.085 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.117 4.117 27 H 0.041 0.959 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.599 7.315 -13.724 20.015 hybrid contribution 1.425 -0.103 -0.483 1.508 sum -11.174 7.212 -14.207 19.461 Atomic orbital electron populations 1.21841 0.98328 0.97994 1.01303 1.21942 0.92607 0.99842 1.02252 1.18776 0.94124 0.89111 0.80910 0.93309 1.21188 0.90682 1.39110 1.06298 0.92146 1.24888 0.98566 0.94828 0.95395 1.69886 1.35212 1.37496 1.09328 0.86520 0.84897 0.78293 0.77439 1.20203 1.21141 1.20185 1.46438 1.14298 1.56324 1.18657 1.20061 0.83104 0.79623 0.88699 1.90694 1.51124 1.58572 1.39922 1.22046 0.83400 0.96444 0.97596 0.90379 1.22202 0.99655 0.98112 1.02586 1.88158 1.22255 1.87817 1.28357 1.21395 0.89496 1.00036 0.86879 1.19597 0.94084 0.93764 1.01085 1.21117 0.92725 0.99730 0.97761 1.21151 0.96483 0.96066 1.00500 1.21179 0.99314 0.93377 0.99664 1.21126 0.93072 0.99560 1.00635 1.21062 0.96574 0.95040 0.98982 0.95880 0.93127 0.94331 0.95063 0.88275 0.92496 0.78104 0.90731 0.91135 0.92004 0.92499 0.92453 0.85816 0.85937 0.86142 0.86023 0.85965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.85 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.53 4.98 -54.93 -0.27 -14.80 16 14 C 0.50 10.19 5.75 -10.99 -0.06 10.13 16 15 O -0.53 -13.03 13.64 -14.31 -0.20 -13.22 16 16 C 0.07 1.01 3.13 -27.89 -0.09 0.93 16 17 H 0.08 0.98 7.79 -51.93 -0.40 0.57 16 18 C -0.17 -2.12 9.48 37.16 0.35 -1.77 16 19 O -0.35 -5.69 9.51 -55.09 -0.52 -6.21 16 20 C 0.10 1.19 5.87 36.00 0.21 1.41 16 21 C -0.09 -1.05 5.51 -104.62 -0.58 -1.63 16 22 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.10 -1.09 9.70 -39.58 -0.38 -1.48 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 29 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 34 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 37 H 0.06 0.56 7.81 -51.93 -0.41 0.15 16 38 H 0.06 0.62 8.03 -51.93 -0.42 0.21 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -31.97 355.33 -9.25 -41.22 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.71 Total: 7.10 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.50 Total: -10.82 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.35 Total: -38.90 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.72 Total: -19.44 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.97 -9.25 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186001093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.689 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds