Wall clock time and date at job start Tue Mar 31 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46789 * 2 1 4 4 H 1.09003 * 109.47405 * 55.00059 * 3 2 1 5 5 C 1.50693 * 109.47138 * 175.00056 * 3 2 1 6 6 H 1.08001 * 120.00048 * 119.99896 * 5 3 2 7 7 C 1.37880 * 120.00140 * 299.99892 * 5 3 2 8 8 N 1.31517 * 119.99912 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46777 * 60.00449 * 9 7 5 11 11 H 1.48505 * 109.47014 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47519 * 300.00584 * 9 7 5 13 13 N 1.46505 * 109.47133 * 294.99934 * 3 2 1 14 14 C 1.34778 * 119.99823 * 85.00142 * 13 3 2 15 15 O 1.21285 * 120.00058 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99902 * 179.97438 * 14 13 3 17 17 H 1.08998 * 109.46862 * 55.00694 * 16 14 13 18 18 C 1.52997 * 109.47466 * 295.00139 * 16 14 13 19 19 O 1.42905 * 109.46996 * 174.99831 * 16 14 13 20 20 C 1.42900 * 114.00074 * 210.00118 * 19 16 14 21 21 C 1.50698 * 109.47265 * 180.02562 * 20 19 16 22 22 C 1.38236 * 120.00002 * 269.72788 * 21 20 19 23 23 C 1.38232 * 119.99568 * 179.76621 * 22 21 20 24 24 C 1.38236 * 120.00381 * 0.50487 * 23 22 21 25 25 C 1.38238 * 119.99646 * 359.74839 * 24 23 22 26 26 C 1.38234 * 120.00287 * 0.02562 * 25 24 23 27 27 H 1.09004 * 109.46592 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47357 * 299.99715 * 1 2 3 29 29 H 1.09002 * 109.47339 * 60.00427 * 1 2 3 30 30 H 1.08999 * 109.47071 * 240.00231 * 2 1 3 31 31 H 1.08997 * 109.47293 * 120.00067 * 2 1 3 32 32 H 0.96996 * 120.00373 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99951 * 264.99502 * 13 3 2 34 34 H 1.09002 * 109.47153 * 59.99773 * 18 16 14 35 35 H 1.09001 * 109.46832 * 299.99964 * 18 16 14 36 36 H 1.09004 * 109.47261 * 179.97438 * 18 16 14 37 37 H 1.09004 * 109.47253 * 300.00831 * 20 19 16 38 38 H 1.09003 * 109.46979 * 59.99699 * 20 19 16 39 39 H 1.08001 * 119.99799 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.99878 * 180.23406 * 23 22 21 41 41 H 1.07996 * 120.00173 * 179.72157 * 24 23 22 42 42 H 1.08003 * 119.99901 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.00087 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8803 1.3811 10 1 6.5003 2.2803 1.3808 11 1 6.3978 0.2170 2.6504 12 1 6.5967 0.1456 0.2343 13 7 1.6524 2.0975 -1.2519 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6318 -0.4344 16 6 0.0365 3.3386 -2.6544 17 1 0.1530 2.6390 -3.4821 18 6 0.9291 4.5589 -2.8887 19 8 -1.3279 3.7552 -2.5714 20 6 -2.0088 3.7693 -3.8277 21 6 -3.4315 4.2220 -3.6230 22 6 -4.4221 3.2931 -3.3647 23 6 -5.7262 3.7090 -3.1721 24 6 -6.0417 5.0527 -3.2482 25 6 -5.0519 5.9811 -3.5117 26 6 -3.7469 5.5658 -3.6997 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8293 -0.0611 2.9498 33 1 2.2719 2.1233 -1.9978 34 1 1.9698 4.2411 -2.9519 35 1 0.8125 5.2585 -2.0609 36 1 0.6411 5.0463 -3.8202 37 1 -1.5036 4.4557 -4.5072 38 1 -2.0041 2.7664 -4.2548 39 1 -4.1764 2.2428 -3.3100 40 1 -6.4995 2.9836 -2.9666 41 1 -7.0614 5.3771 -3.1022 42 1 -5.2984 7.0309 -3.5716 43 1 -2.9738 6.2911 -3.9060 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186001093.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:23 Heat of formation + Delta-G solvation = -85.875352 kcal Electronic energy + Delta-G solvation = -23048.325103 eV Core-core repulsion = 19671.445307 eV Total energy + Delta-G solvation = -3376.879795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99211 -40.16255 -38.55082 -36.79908 -34.42470 -33.60485 -32.72205 -31.79330 -31.39205 -28.89168 -27.12700 -25.53655 -24.48658 -23.47838 -22.25505 -21.98365 -21.05982 -19.09126 -18.14092 -17.71724 -17.33584 -17.09508 -16.62284 -16.32222 -16.10389 -15.82398 -15.28158 -15.07115 -14.58488 -14.31388 -14.27809 -13.88968 -13.81514 -13.60634 -13.34083 -13.21419 -13.10933 -12.96731 -12.89469 -12.64387 -12.36544 -12.16851 -12.07211 -11.91801 -11.80877 -11.58524 -11.06109 -10.88244 -10.54543 -10.29829 -9.82288 -9.75538 -9.62420 -8.14648 -6.32415 0.32787 0.49921 1.45820 1.47837 1.55485 1.83627 2.15112 2.44227 2.83308 3.14513 3.27038 3.80231 3.89979 3.96518 4.03680 4.13777 4.16603 4.28759 4.36366 4.40163 4.47894 4.55834 4.64370 4.73233 4.74615 4.76399 4.83921 5.05734 5.07440 5.15166 5.22014 5.24846 5.43500 5.54319 5.56069 5.60108 5.63222 5.67144 5.79041 5.91437 6.09428 6.16470 6.18977 6.75694 7.01660 7.34945 7.61027 8.90636 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.031374 B = 0.003099 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.258521 B = 9031.617506 C = 9555.442453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.006 1.006 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.700 5.700 14 C 0.494 3.506 15 O -0.579 6.579 16 C 0.076 3.924 17 H 0.114 0.886 18 C -0.162 4.162 19 O -0.382 6.382 20 C 0.096 3.904 21 C -0.109 4.109 22 C -0.118 4.118 23 C -0.134 4.134 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.111 4.111 27 H 0.046 0.954 28 H 0.021 0.979 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.264 0.736 33 H 0.405 0.595 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.139 0.861 41 H 0.146 0.854 42 H 0.146 0.854 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.479 8.223 -17.295 22.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.011 0.989 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.187 1.187 13 N -0.351 5.351 14 C 0.281 3.719 15 O -0.459 6.459 16 C 0.015 3.985 17 H 0.131 0.869 18 C -0.219 4.219 19 O -0.301 6.301 20 C 0.020 3.980 21 C -0.109 4.109 22 C -0.136 4.136 23 C -0.152 4.152 24 C -0.139 4.139 25 C -0.149 4.149 26 C -0.129 4.129 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.105 0.895 35 H 0.066 0.934 36 H 0.115 0.885 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.139 0.861 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.164 0.836 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.098 8.152 -16.283 21.862 hybrid contribution 1.157 -0.323 0.302 1.238 sum -10.941 7.830 -15.980 20.890 Atomic orbital electron populations 1.21672 0.97248 0.99045 1.00048 1.21791 0.93458 0.99258 1.01451 1.18350 0.93705 0.89054 0.81272 0.98853 1.21552 0.91251 1.38929 1.06776 0.90710 1.25799 1.03374 0.94400 0.95029 1.70053 1.37197 1.38360 1.09882 0.85416 0.79025 0.78449 0.77545 1.19649 1.21401 1.18725 1.46167 1.15172 1.56046 1.17714 1.21090 0.82052 0.78634 0.90156 1.90671 1.52521 1.60341 1.42365 1.21992 0.83758 0.97822 0.94885 0.86891 1.22197 0.99772 0.96553 1.03401 1.88119 1.22796 1.87970 1.31191 1.21613 0.89334 1.01415 0.85645 1.19812 0.94351 0.94535 1.02212 1.21309 0.93666 0.99858 0.98789 1.21450 0.96422 0.97124 1.00211 1.21555 1.00665 0.93023 0.98643 1.21497 0.92704 1.00967 0.99727 1.21334 0.97635 0.94886 0.99013 0.93498 0.95995 0.93943 0.93694 0.90996 0.92640 0.75979 0.89513 0.93353 0.88505 0.89828 0.91478 0.86067 0.84266 0.83595 0.83601 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.51 71.98 0.61 -5.12 16 2 C -0.12 -6.01 5.45 30.60 0.17 -5.85 16 3 C 0.28 14.44 2.24 44.24 0.10 14.54 16 4 H -0.01 -0.40 7.58 -2.39 -0.02 -0.42 16 5 C -0.55 -28.70 8.73 25.60 0.22 -28.47 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.75 5.29 84.66 0.45 1.20 16 8 N -0.92 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 13 N -0.70 -28.64 4.98 -446.09 -2.22 -30.87 16 14 C 0.49 20.17 5.75 87.66 0.50 20.67 16 15 O -0.58 -29.78 13.64 15.94 0.22 -29.57 16 16 C 0.08 2.19 3.13 29.85 0.09 2.29 16 17 H 0.11 2.45 7.79 -2.39 -0.02 2.43 16 18 C -0.16 -3.68 9.48 71.98 0.68 -2.99 16 19 O -0.38 -12.15 9.51 -129.99 -1.24 -13.39 16 20 C 0.10 2.16 5.87 71.24 0.42 2.57 16 21 C -0.11 -2.61 5.51 -19.87 -0.11 -2.71 16 22 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 23 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 24 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 26 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 29 H 0.04 1.92 5.64 -2.39 -0.01 1.90 16 30 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 32 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 33 H 0.40 13.50 8.32 -92.71 -0.77 12.73 16 34 H 0.09 1.75 7.93 -2.39 -0.02 1.73 16 35 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.55 7.87 -2.38 -0.02 1.53 16 37 H 0.08 1.39 7.81 -2.39 -0.02 1.37 16 38 H 0.07 1.34 8.03 -2.39 -0.02 1.32 16 39 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 43 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -72.57 355.33 3.49 -69.08 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.22 Total: 28.56 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 4.24 Total: -15.08 kcal Atomic # 7 Polarization: -81.45 SS G_CDS: -1.98 Total: -83.44 kcal Atomic # 8 Polarization: -41.94 SS G_CDS: -1.02 Total: -42.96 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -72.57 3.49 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186001093.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.794 kcal (2) G-P(sol) polarization free energy of solvation -72.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds