Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47370 * 55.00440 * 16 14 13 18 18 C 1.52997 * 109.47331 * 295.00215 * 16 14 13 19 19 O 1.42897 * 109.47436 * 174.99877 * 16 14 13 20 20 C 1.42898 * 114.00794 * 209.99948 * 19 16 14 21 21 C 1.50694 * 109.47439 * 179.97438 * 20 19 16 22 22 C 1.38236 * 120.00192 * 269.72690 * 21 20 19 23 23 C 1.38241 * 119.99725 * 179.76558 * 22 21 20 24 24 C 1.38232 * 120.00056 * 0.51083 * 23 22 21 25 25 C 1.38236 * 119.99904 * 359.74136 * 24 23 22 26 26 C 1.38232 * 119.99728 * 90.00330 * 21 20 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.09001 * 109.47117 * 299.99871 * 18 16 14 35 35 H 1.09000 * 109.47497 * 60.00098 * 18 16 14 36 36 H 1.09003 * 109.47164 * 180.02562 * 18 16 14 37 37 H 1.08998 * 109.46914 * 300.00243 * 20 19 16 38 38 H 1.09002 * 109.46600 * 60.00009 * 20 19 16 39 39 H 1.07999 * 120.00118 * 0.02562 * 22 21 20 40 40 H 1.08003 * 119.99522 * 180.23662 * 23 22 21 41 41 H 1.07999 * 120.00155 * 179.72601 * 24 23 22 42 42 H 1.08000 * 119.99562 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00259 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.7772 4.0940 2.9141 18 6 -0.0410 2.2955 3.7724 19 8 -1.2408 3.9577 2.4926 20 6 -1.4286 5.1218 3.2998 21 6 -2.8012 5.6910 3.0491 22 6 -2.9868 6.6373 2.0587 23 6 -4.2469 7.1558 1.8256 24 6 -5.3194 6.7357 2.5898 25 6 -5.1328 5.7932 3.5837 26 6 -3.8737 5.2709 3.8134 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 -0.7819 1.5391 3.5133 35 1 0.9331 1.8225 3.8963 36 1 -0.3300 2.7825 4.7039 37 1 -1.3326 4.8537 4.3520 38 1 -0.6747 5.8665 3.0444 39 1 -2.1481 6.9685 1.4643 40 1 -4.3925 7.8923 1.0492 41 1 -6.3030 7.1440 2.4106 42 1 -5.9707 5.4653 4.1810 43 1 -3.7280 4.5345 4.5898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186001111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -66.952681 kcal Electronic energy + Delta-G solvation = -23038.051102 eV Core-core repulsion = 19661.991856 eV Total energy + Delta-G solvation = -3376.059247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.66268 -39.09899 -37.30541 -34.91792 -32.79175 -32.20716 -31.17745 -31.01010 -30.14050 -26.91519 -26.22998 -24.00207 -22.78887 -22.68073 -21.42880 -20.22655 -19.26811 -17.49089 -17.05013 -16.56926 -15.84203 -15.72774 -15.18753 -15.10229 -14.82479 -14.32773 -14.02959 -13.60652 -13.50790 -13.04936 -12.95188 -12.67054 -12.60432 -12.42062 -12.09089 -11.75328 -11.54079 -11.29110 -11.20863 -11.10508 -11.00109 -10.89566 -10.80675 -10.30698 -10.14894 -9.75306 -9.58364 -9.04597 -9.02187 -8.97727 -8.72290 -8.47509 -7.79224 -6.11342 -4.21086 1.15171 1.30120 3.25364 3.29623 3.31247 3.34824 3.42205 3.85144 4.29345 4.44522 4.69216 4.78062 4.89011 4.98134 5.03311 5.13213 5.19419 5.23645 5.27611 5.40280 5.44232 5.53547 5.68230 5.81836 5.84893 5.92760 6.18171 6.32397 6.38134 6.42998 6.49906 6.50560 6.70313 6.86759 7.07379 7.13299 7.26831 7.40440 7.48273 7.63800 7.76450 7.92351 8.19932 8.68561 8.79691 9.17372 9.46411 10.93907 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.003051 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.241391 B = 9174.578112 C = 9240.014328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.707 5.707 14 C 0.502 3.498 15 O -0.527 6.527 16 C 0.066 3.934 17 H 0.079 0.921 18 C -0.167 4.167 19 O -0.348 6.348 20 C 0.098 3.902 21 C -0.085 4.085 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.117 4.117 25 C -0.126 4.126 26 C -0.099 4.099 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.022 0.978 30 H 0.031 0.969 31 H 0.099 0.901 32 H 0.265 0.735 33 H 0.387 0.613 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 10.005 13.785 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.403 6.403 16 C 0.005 3.995 17 H 0.097 0.903 18 C -0.225 4.225 19 O -0.266 6.266 20 C 0.022 3.978 21 C -0.085 4.085 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.135 4.135 25 C -0.144 4.144 26 C -0.117 4.117 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.219 0.781 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.537 9.801 12.761 19.799 hybrid contribution 1.484 0.034 0.428 1.545 sum -10.053 9.834 13.189 19.280 Atomic orbital electron populations 1.21846 0.98299 0.98023 1.01351 1.21931 0.92627 0.99791 1.02229 1.18775 0.94099 0.89158 0.80883 0.93341 1.21191 0.90696 1.39139 1.06302 0.92155 1.24890 0.98566 0.94824 0.95393 1.69890 1.35206 1.37502 1.09302 0.86518 0.84895 0.78283 0.77446 1.20176 1.21139 1.20216 1.46439 1.14270 1.56407 1.18607 1.20057 0.83032 0.79980 0.88415 1.90692 1.51095 1.58538 1.39984 1.22046 0.86706 0.95692 0.95077 0.90287 1.22201 1.03506 0.99435 0.97388 1.88152 1.32671 1.41119 1.64657 1.21396 0.93706 0.87922 0.94791 1.19597 0.94663 0.97162 0.97107 1.21127 0.97640 0.96298 0.96267 1.21156 0.92797 1.00497 0.99747 1.21178 0.98816 0.97604 0.95941 1.21124 0.97021 0.97682 0.98579 1.21058 0.92347 0.98787 0.99477 0.93186 0.94189 0.95881 0.95047 0.88326 0.92496 0.78103 0.91207 0.90800 0.91965 0.92499 0.92410 0.85786 0.85927 0.86143 0.86030 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.11 5.45 -26.74 -0.15 -3.25 16 3 C 0.27 6.85 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.73 11.30 55.43 0.63 -24.10 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 N -0.71 -14.53 4.98 -54.94 -0.27 -14.80 16 14 C 0.50 10.19 5.75 -10.99 -0.06 10.12 16 15 O -0.53 -13.02 13.64 -14.30 -0.20 -13.22 16 16 C 0.07 1.01 3.13 -27.89 -0.09 0.92 16 17 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 18 C -0.17 -2.07 9.48 37.16 0.35 -1.72 16 19 O -0.35 -5.69 9.51 -55.09 -0.52 -6.22 16 20 C 0.10 1.20 5.87 36.00 0.21 1.41 16 21 C -0.09 -1.06 5.51 -104.63 -0.58 -1.63 16 22 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 26 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 27 H 0.05 1.23 7.85 -51.93 -0.41 0.83 16 28 H 0.04 0.90 5.64 -51.93 -0.29 0.60 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 32 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 36 H 0.06 0.61 7.87 -51.93 -0.41 0.20 16 37 H 0.06 0.56 7.81 -51.93 -0.41 0.15 16 38 H 0.06 0.63 8.03 -51.93 -0.42 0.22 16 39 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 355.32 15.07 5.35 5.35 Total: -1.00 -31.99 355.32 -9.25 -41.24 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.71 Total: 7.12 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -2.50 Total: -10.84 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.35 Total: -38.90 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.72 Total: -19.44 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.99 -9.25 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186001111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.714 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds