Wall clock time and date at job start Tue Mar 31 2020 06:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 H 1.09004 * 109.47370 * 55.00440 * 16 14 13 18 18 C 1.52997 * 109.47331 * 295.00215 * 16 14 13 19 19 O 1.42897 * 109.47436 * 174.99877 * 16 14 13 20 20 C 1.42898 * 114.00794 * 209.99948 * 19 16 14 21 21 C 1.50694 * 109.47439 * 179.97438 * 20 19 16 22 22 C 1.38236 * 120.00192 * 269.72690 * 21 20 19 23 23 C 1.38241 * 119.99725 * 179.76558 * 22 21 20 24 24 C 1.38232 * 120.00056 * 0.51083 * 23 22 21 25 25 C 1.38236 * 119.99904 * 359.74136 * 24 23 22 26 26 C 1.38232 * 119.99728 * 90.00330 * 21 20 19 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 34 34 H 1.09001 * 109.47117 * 299.99871 * 18 16 14 35 35 H 1.09000 * 109.47497 * 60.00098 * 18 16 14 36 36 H 1.09003 * 109.47164 * 180.02562 * 18 16 14 37 37 H 1.08998 * 109.46914 * 300.00243 * 20 19 16 38 38 H 1.09002 * 109.46600 * 60.00009 * 20 19 16 39 39 H 1.07999 * 120.00118 * 0.02562 * 22 21 20 40 40 H 1.08003 * 119.99522 * 180.23662 * 23 22 21 41 41 H 1.07999 * 120.00155 * 179.72601 * 24 23 22 42 42 H 1.08000 * 119.99562 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.00259 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 1 0.7772 4.0940 2.9141 18 6 -0.0410 2.2955 3.7724 19 8 -1.2408 3.9577 2.4926 20 6 -1.4286 5.1218 3.2998 21 6 -2.8012 5.6910 3.0491 22 6 -2.9868 6.6373 2.0587 23 6 -4.2469 7.1558 1.8256 24 6 -5.3194 6.7357 2.5898 25 6 -5.1328 5.7932 3.5837 26 6 -3.8737 5.2709 3.8134 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9503 33 1 2.2720 2.1231 1.9978 34 1 -0.7819 1.5391 3.5133 35 1 0.9331 1.8225 3.8963 36 1 -0.3300 2.7825 4.7039 37 1 -1.3326 4.8537 4.3520 38 1 -0.6747 5.8665 3.0444 39 1 -2.1481 6.9685 1.4643 40 1 -4.3925 7.8923 1.0492 41 1 -6.3030 7.1440 2.4106 42 1 -5.9707 5.4653 4.1810 43 1 -3.7280 4.5345 4.5898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186001111.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:26 Heat of formation + Delta-G solvation = -85.934253 kcal Electronic energy + Delta-G solvation = -23038.874205 eV Core-core repulsion = 19661.991856 eV Total energy + Delta-G solvation = -3376.882349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.99800 -40.16684 -38.55011 -36.79979 -34.42507 -33.57519 -32.72237 -31.79615 -31.44936 -28.85449 -27.13068 -25.50641 -24.52873 -23.48176 -22.25891 -21.97398 -21.05433 -19.06830 -18.19169 -17.71921 -17.36012 -16.94271 -16.72607 -16.27187 -16.16588 -15.90718 -15.25771 -14.96703 -14.57995 -14.30291 -14.24002 -14.05243 -13.80055 -13.50388 -13.36354 -13.22576 -13.15111 -12.95739 -12.88549 -12.64251 -12.38252 -12.15478 -12.04547 -11.92042 -11.81135 -11.58363 -11.06143 -10.89570 -10.54291 -10.28964 -9.82599 -9.75892 -9.62707 -8.14843 -6.32736 0.32485 0.49559 1.45739 1.47733 1.55426 1.83860 2.14754 2.44156 2.83138 3.14266 3.26837 3.80079 3.89626 3.96476 4.03645 4.13783 4.17074 4.28483 4.36040 4.39871 4.48464 4.56483 4.64148 4.73963 4.75033 4.76374 4.84548 5.06220 5.07184 5.14854 5.22222 5.25804 5.44043 5.54028 5.56278 5.59801 5.63077 5.66862 5.79419 5.90996 6.09161 6.16305 6.19025 6.75452 7.01618 7.34723 7.60979 8.90431 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027519 B = 0.003051 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.241391 B = 9174.578112 C = 9240.014328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.280 3.720 4 H -0.007 1.007 5 C -0.548 4.548 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.700 5.700 14 C 0.495 3.505 15 O -0.579 6.579 16 C 0.075 3.925 17 H 0.111 0.889 18 C -0.161 4.161 19 O -0.381 6.381 20 C 0.096 3.904 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.135 4.135 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.110 4.110 27 H 0.020 0.980 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.265 0.735 33 H 0.405 0.595 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 10.473 16.447 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.011 0.989 5 C -0.586 4.586 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.351 5.351 14 C 0.281 3.719 15 O -0.459 6.459 16 C 0.015 3.985 17 H 0.128 0.872 18 C -0.218 4.218 19 O -0.301 6.301 20 C 0.020 3.980 21 C -0.109 4.109 22 C -0.137 4.137 23 C -0.152 4.152 24 C -0.139 4.139 25 C -0.148 4.148 26 C -0.128 4.128 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.240 0.760 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.196 10.286 15.479 21.697 hybrid contribution 1.279 -0.047 -0.420 1.347 sum -9.916 10.239 15.060 20.736 Atomic orbital electron populations 1.21679 0.97287 0.99030 1.00074 1.21775 0.93406 0.99230 1.01425 1.18350 0.93679 0.89089 0.81255 0.98861 1.21555 0.91262 1.38976 1.06789 0.90730 1.25801 1.03387 0.94383 0.95016 1.70058 1.37197 1.38360 1.09857 0.85411 0.79000 0.78445 0.77552 1.18722 1.21392 1.19653 1.46169 1.15113 1.56160 1.17663 1.21088 0.81969 0.79047 0.89822 1.90669 1.52468 1.60375 1.42393 1.22001 0.87369 0.96854 0.92323 0.87173 1.22194 1.03859 0.98345 0.97420 1.88111 1.33001 1.42691 1.66269 1.21608 0.93954 0.86768 0.95673 1.19808 0.95385 0.97805 0.97908 1.21310 0.98394 0.97207 0.96836 1.21448 0.92591 1.00836 1.00363 1.21555 0.99720 0.97228 0.95361 1.21503 0.97433 0.97242 0.98657 1.21334 0.92539 0.99145 0.99754 0.96054 0.93842 0.93553 0.93671 0.91054 0.92634 0.75978 0.93060 0.89420 0.88576 0.89707 0.91688 0.86227 0.84320 0.83567 0.83514 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.80 8.51 71.98 0.61 -5.18 16 2 C -0.12 -5.96 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.45 2.24 44.24 0.10 14.55 16 4 H -0.01 -0.41 7.58 -2.39 -0.02 -0.42 16 5 C -0.55 -28.76 8.73 25.60 0.22 -28.53 16 6 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.81 11.30 21.45 0.24 -52.57 16 9 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.70 -28.66 4.98 -446.11 -2.22 -30.88 16 14 C 0.49 20.18 5.75 87.66 0.50 20.69 16 15 O -0.58 -29.81 13.64 15.97 0.22 -29.59 16 16 C 0.08 2.17 3.13 29.85 0.09 2.26 16 17 H 0.11 2.46 7.79 -2.38 -0.02 2.44 16 18 C -0.16 -3.52 9.48 71.98 0.68 -2.83 16 19 O -0.38 -12.19 9.51 -129.99 -1.24 -13.43 16 20 C 0.10 2.18 5.87 71.23 0.42 2.60 16 21 C -0.11 -2.63 5.51 -19.87 -0.11 -2.74 16 22 C -0.12 -2.88 9.70 22.27 0.22 -2.67 16 23 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 24 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 26 C -0.11 -2.28 9.70 22.27 0.22 -2.06 16 27 H 0.02 1.08 7.85 -2.39 -0.02 1.06 16 28 H 0.04 1.98 5.64 -2.39 -0.01 1.97 16 29 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.72 16 33 H 0.40 13.51 8.32 -92.71 -0.77 12.73 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.67 7.93 -2.39 -0.02 1.65 16 36 H 0.10 1.48 7.87 -2.39 -0.02 1.46 16 37 H 0.08 1.42 7.81 -2.39 -0.02 1.40 16 38 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 39 H 0.12 2.82 8.06 -2.91 -0.02 2.79 16 40 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -72.61 355.32 3.49 -69.12 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.22 Total: 28.59 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.24 Total: -15.06 kcal Atomic # 7 Polarization: -81.47 SS G_CDS: -1.98 Total: -83.45 kcal Atomic # 8 Polarization: -42.00 SS G_CDS: -1.02 Total: -43.02 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -72.61 3.49 -69.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186001111.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.813 kcal (2) G-P(sol) polarization free energy of solvation -72.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds