Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 N 1.46505 * 109.46822 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00524 * 270.18192 * 4 3 2 6 6 H 1.07994 * 120.00313 * 138.80960 * 5 4 3 7 7 C 1.38812 * 120.00044 * 318.81678 * 5 4 3 8 8 N 1.31619 * 119.99866 * 341.16103 * 7 5 4 9 9 Si 1.86804 * 120.00263 * 161.15790 * 7 5 4 10 10 H 1.48501 * 109.46790 * 60.00042 * 9 7 5 11 11 H 1.48494 * 109.46963 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46920 * 300.00267 * 9 7 5 13 13 C 1.46502 * 119.99558 * 90.18964 * 4 3 2 14 14 C 1.53000 * 109.47231 * 89.99497 * 13 4 3 15 15 C 1.50701 * 109.47200 * 179.97438 * 14 13 4 16 16 C 1.37961 * 120.07756 * 98.35560 * 15 14 13 17 17 C 1.38350 * 120.14832 * 179.97438 * 16 15 14 18 18 C 1.38387 * 120.30509 * 0.05114 * 17 16 15 19 19 C 1.37924 * 120.15088 * 359.97438 * 18 17 16 20 20 C 1.39612 * 120.07381 * 278.08613 * 15 14 13 21 21 C 1.47723 * 120.15233 * 359.97438 * 20 15 14 22 22 O 1.21476 * 119.99962 * 4.70872 * 21 20 15 23 23 O 1.34712 * 120.00507 * 184.70456 * 21 20 15 24 24 C 1.45193 * 117.00099 * 180.02562 * 23 21 20 25 25 H 1.08996 * 109.47194 * 59.99725 * 1 2 3 26 26 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46946 * 299.99770 * 1 2 3 28 28 H 1.09001 * 109.46946 * 240.00230 * 2 1 3 29 29 H 1.08998 * 109.47590 * 120.00603 * 2 1 3 30 30 H 1.09001 * 109.46468 * 60.00264 * 3 2 1 31 31 H 1.08996 * 109.47282 * 300.00221 * 3 2 1 32 32 H 0.97001 * 120.00088 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47232 * 329.99762 * 13 4 3 34 34 H 1.09000 * 109.47001 * 209.99346 * 13 4 3 35 35 H 1.09002 * 109.46795 * 59.99998 * 14 13 4 36 36 H 1.09000 * 109.47531 * 299.99842 * 14 13 4 37 37 H 1.07996 * 119.92629 * 0.02562 * 16 15 14 38 38 H 1.08005 * 119.84352 * 180.02562 * 17 16 15 39 39 H 1.07999 * 119.92334 * 179.97438 * 18 17 16 40 40 H 1.07993 * 120.07582 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.47541 * 60.00449 * 24 23 21 42 42 H 1.09007 * 109.47122 * 180.02562 * 24 23 21 43 43 H 1.08996 * 109.47352 * 299.99450 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.4388 1.1867 6 1 5.0687 0.8225 1.3009 7 6 3.7525 2.2272 2.2424 8 7 2.9369 3.2354 2.0173 9 14 4.3222 1.8573 3.9826 10 1 5.8024 1.9552 4.0501 11 1 3.7184 2.8379 4.9200 12 1 3.8991 0.4849 4.3607 13 6 4.2380 1.4464 -1.2679 14 6 4.4931 2.8902 -1.7050 15 6 5.2476 2.8943 -3.0095 16 6 4.5713 3.0713 -4.1989 17 6 5.2626 3.0758 -5.3973 18 6 6.6354 2.9021 -5.4122 19 6 7.3240 2.7235 -4.2306 20 6 6.6334 2.7246 -3.0168 21 6 7.3651 2.5410 -1.7467 22 8 6.7536 2.4518 -0.7008 23 8 8.7105 2.4725 -1.7482 24 6 9.3627 2.2908 -0.4638 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 2.6319 3.7866 2.7549 33 1 3.6492 0.9349 -2.0294 34 1 5.1904 0.9322 -1.1388 35 1 5.0819 3.4017 -0.9435 36 1 3.5408 3.4045 -1.8341 37 1 3.5000 3.2075 -4.1943 38 1 4.7282 3.2152 -6.3255 39 1 7.1688 2.9062 -6.3513 40 1 8.3954 2.5885 -4.2436 41 1 9.0226 1.3589 -0.0121 42 1 10.4426 2.2526 -0.6068 43 1 9.1128 3.1248 0.1919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187053120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -44.660654 kcal Electronic energy + Delta-G solvation = -23925.230441 eV Core-core repulsion = 20550.137849 eV Total energy + Delta-G solvation = -3375.092592 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33668 -38.59429 -36.34428 -35.81990 -33.06183 -32.18483 -31.30240 -30.61656 -27.92633 -27.21396 -25.40939 -24.08682 -23.33540 -21.68731 -21.09558 -20.25052 -19.51339 -17.58640 -16.59172 -16.46096 -15.97316 -15.56066 -14.93961 -14.73254 -14.42465 -14.03958 -13.76275 -13.37159 -13.25997 -13.12658 -12.80305 -12.45505 -12.34214 -12.12937 -11.85540 -11.59073 -11.49058 -11.19165 -10.98424 -10.88013 -10.69698 -10.60323 -10.49295 -10.26319 -10.14368 -9.84674 -9.63429 -9.42642 -9.24303 -8.86070 -8.53962 -8.31045 -6.34181 -5.62298 -3.20936 0.96847 1.53714 2.93795 3.00549 3.45555 3.49585 3.52265 3.99095 4.60602 4.91648 5.00163 5.07130 5.19657 5.33488 5.43538 5.48142 5.48998 5.58394 5.71472 5.74255 5.90933 5.94879 5.99857 6.13991 6.20154 6.31936 6.44943 6.51415 6.54082 6.59633 6.61383 6.65297 6.69875 6.78977 6.94586 6.99111 7.03557 7.23090 7.36831 7.49261 7.83788 8.00593 8.24768 8.72699 9.37969 9.96861 10.58261 11.37883 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.005974 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.477160 B = 4686.189129 C = 6314.180736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.150 3.850 4 N -0.579 5.579 5 C -0.237 4.237 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.169 3.831 14 C -0.111 4.111 15 C 0.001 3.999 16 C -0.137 4.137 17 C -0.086 4.086 18 C -0.155 4.155 19 C -0.064 4.064 20 C -0.128 4.128 21 C 0.482 3.518 22 O -0.447 6.447 23 O -0.368 6.368 24 C 0.039 3.961 25 H 0.044 0.956 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.019 0.981 32 H 0.252 0.748 33 H 0.024 0.976 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.131 0.869 41 H 0.063 0.937 42 H 0.095 0.905 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.630 -0.959 -12.827 14.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C 0.024 3.976 4 N -0.297 5.297 5 C -0.367 4.367 6 H 0.074 0.926 7 C -0.187 4.187 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.211 1.211 13 C 0.042 3.958 14 C -0.150 4.150 15 C 0.000 4.000 16 C -0.155 4.155 17 C -0.104 4.104 18 C -0.173 4.173 19 C -0.082 4.082 20 C -0.130 4.130 21 C 0.325 3.675 22 O -0.332 6.332 23 O -0.286 6.286 24 C -0.055 4.055 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.378 -0.872 -12.312 13.893 hybrid contribution 0.353 -0.033 1.037 1.096 sum 6.731 -0.906 -11.274 13.162 Atomic orbital electron populations 1.21696 0.97665 0.99835 1.01011 1.22110 0.93505 1.01859 1.00597 1.20882 0.83863 0.91951 1.00949 1.43847 1.00604 1.84556 1.00714 1.18901 1.10158 1.18854 0.88776 0.92569 1.25232 0.99696 0.94730 0.99020 1.69981 1.36695 1.16342 1.30384 0.86529 0.78505 0.77496 0.85170 1.20870 1.21806 1.21060 1.20813 0.95451 0.91457 0.88046 1.21731 0.98631 1.02955 0.91730 1.20524 0.91608 0.90571 0.97340 1.21079 1.00335 1.02621 0.91471 1.21353 0.94429 0.96652 0.97954 1.20990 0.94511 1.03981 0.97817 1.21377 1.00057 0.95386 0.91393 1.18988 0.93110 1.10103 0.90774 1.21339 0.80746 0.75375 0.90066 1.91110 1.67249 1.42000 1.32850 1.86476 1.21859 1.84430 1.35800 1.23179 0.96565 1.02557 0.83178 0.93718 0.94251 0.93124 0.94212 0.92488 0.89391 0.96231 0.93849 0.95777 0.93603 0.87906 0.92355 0.85358 0.85949 0.85862 0.85095 0.91803 0.88701 0.91888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.91 37.16 0.37 -2.12 16 2 C -0.14 -2.92 6.26 -26.73 -0.17 -3.09 16 3 C 0.15 3.59 5.29 -4.04 -0.02 3.57 16 4 N -0.58 -14.84 2.40 -173.24 -0.42 -15.26 16 5 C -0.24 -6.68 9.43 -15.06 -0.14 -6.82 16 6 H 0.06 1.64 7.90 -52.49 -0.41 1.23 16 7 C 0.01 0.36 4.99 -17.43 -0.09 0.28 16 8 N -0.89 -26.22 11.57 55.49 0.64 -25.58 16 9 Si 0.89 22.41 29.59 -169.99 -5.03 17.38 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 13 C 0.17 3.82 5.19 -4.04 -0.02 3.80 16 14 C -0.11 -2.35 4.93 -27.88 -0.14 -2.49 16 15 C 0.00 0.02 5.17 -104.21 -0.54 -0.52 16 16 C -0.14 -1.96 9.66 -39.64 -0.38 -2.35 16 17 C -0.09 -1.01 10.04 -39.49 -0.40 -1.40 16 18 C -0.15 -1.76 10.03 -39.64 -0.40 -2.16 16 19 C -0.06 -0.84 9.62 -39.17 -0.38 -1.22 16 20 C -0.13 -2.12 5.87 -104.98 -0.62 -2.74 16 21 C 0.48 8.76 7.77 34.61 0.27 9.03 16 22 O -0.45 -9.86 11.42 -19.25 -0.22 -10.08 16 23 O -0.37 -5.66 9.83 -40.52 -0.40 -6.06 16 24 C 0.04 0.51 10.56 101.05 1.07 1.57 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 2.38 5.69 -51.93 -0.30 2.09 16 31 H 0.02 0.44 8.07 -51.93 -0.42 0.03 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.02 0.50 8.07 -51.93 -0.42 0.08 16 34 H 0.05 1.08 6.52 -51.93 -0.34 0.75 16 35 H 0.10 2.55 5.92 -51.93 -0.31 2.25 16 36 H 0.06 1.25 8.02 -51.93 -0.42 0.84 16 37 H 0.13 1.69 8.05 -52.49 -0.42 1.26 16 38 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 39 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.13 1.49 7.62 -52.49 -0.40 1.09 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.26 15.07 5.37 5.37 Total: -1.00 -31.52 356.26 -8.43 -39.94 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -6.80 Total: 0.94 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.58 Total: -6.66 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.23 Total: -40.84 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.62 Total: -16.14 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.52 -8.43 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187053120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.716 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds