Wall clock time and date at job start Tue Mar 31 2020 06:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47180 * 2 1 4 4 N 1.46505 * 109.46822 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00524 * 270.18192 * 4 3 2 6 6 H 1.07994 * 120.00313 * 138.80960 * 5 4 3 7 7 C 1.38812 * 120.00044 * 318.81678 * 5 4 3 8 8 N 1.31619 * 119.99866 * 341.16103 * 7 5 4 9 9 Si 1.86804 * 120.00263 * 161.15790 * 7 5 4 10 10 H 1.48501 * 109.46790 * 60.00042 * 9 7 5 11 11 H 1.48494 * 109.46963 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46920 * 300.00267 * 9 7 5 13 13 C 1.46502 * 119.99558 * 90.18964 * 4 3 2 14 14 C 1.53000 * 109.47231 * 89.99497 * 13 4 3 15 15 C 1.50701 * 109.47200 * 179.97438 * 14 13 4 16 16 C 1.37961 * 120.07756 * 98.35560 * 15 14 13 17 17 C 1.38350 * 120.14832 * 179.97438 * 16 15 14 18 18 C 1.38387 * 120.30509 * 0.05114 * 17 16 15 19 19 C 1.37924 * 120.15088 * 359.97438 * 18 17 16 20 20 C 1.39612 * 120.07381 * 278.08613 * 15 14 13 21 21 C 1.47723 * 120.15233 * 359.97438 * 20 15 14 22 22 O 1.21476 * 119.99962 * 4.70872 * 21 20 15 23 23 O 1.34712 * 120.00507 * 184.70456 * 21 20 15 24 24 C 1.45193 * 117.00099 * 180.02562 * 23 21 20 25 25 H 1.08996 * 109.47194 * 59.99725 * 1 2 3 26 26 H 1.08999 * 109.47194 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46946 * 299.99770 * 1 2 3 28 28 H 1.09001 * 109.46946 * 240.00230 * 2 1 3 29 29 H 1.08998 * 109.47590 * 120.00603 * 2 1 3 30 30 H 1.09001 * 109.46468 * 60.00264 * 3 2 1 31 31 H 1.08996 * 109.47282 * 300.00221 * 3 2 1 32 32 H 0.97001 * 120.00088 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47232 * 329.99762 * 13 4 3 34 34 H 1.09000 * 109.47001 * 209.99346 * 13 4 3 35 35 H 1.09002 * 109.46795 * 59.99998 * 14 13 4 36 36 H 1.09000 * 109.47531 * 299.99842 * 14 13 4 37 37 H 1.07996 * 119.92629 * 0.02562 * 16 15 14 38 38 H 1.08005 * 119.84352 * 180.02562 * 17 16 15 39 39 H 1.07999 * 119.92334 * 179.97438 * 18 17 16 40 40 H 1.07993 * 120.07582 * 180.02562 * 19 18 17 41 41 H 1.08999 * 109.47541 * 60.00449 * 24 23 21 42 42 H 1.09007 * 109.47122 * 180.02562 * 24 23 21 43 43 H 1.08996 * 109.47352 * 299.99450 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.4388 1.1867 6 1 5.0687 0.8225 1.3009 7 6 3.7525 2.2272 2.2424 8 7 2.9369 3.2354 2.0173 9 14 4.3222 1.8573 3.9826 10 1 5.8024 1.9552 4.0501 11 1 3.7184 2.8379 4.9200 12 1 3.8991 0.4849 4.3607 13 6 4.2380 1.4464 -1.2679 14 6 4.4931 2.8902 -1.7050 15 6 5.2476 2.8943 -3.0095 16 6 4.5713 3.0713 -4.1989 17 6 5.2626 3.0758 -5.3973 18 6 6.6354 2.9021 -5.4122 19 6 7.3240 2.7235 -4.2306 20 6 6.6334 2.7246 -3.0168 21 6 7.3651 2.5410 -1.7467 22 8 6.7536 2.4518 -0.7008 23 8 8.7105 2.4725 -1.7482 24 6 9.3627 2.2908 -0.4638 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6766 1.9562 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 2.6319 3.7866 2.7549 33 1 3.6492 0.9349 -2.0294 34 1 5.1904 0.9322 -1.1388 35 1 5.0819 3.4017 -0.9435 36 1 3.5408 3.4045 -1.8341 37 1 3.5000 3.2075 -4.1943 38 1 4.7282 3.2152 -6.3255 39 1 7.1688 2.9062 -6.3513 40 1 8.3954 2.5885 -4.2436 41 1 9.0226 1.3589 -0.0121 42 1 10.4426 2.2526 -0.6068 43 1 9.1128 3.1248 0.1919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187053120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:08 Heat of formation + Delta-G solvation = -61.234981 kcal Electronic energy + Delta-G solvation = -23925.949158 eV Core-core repulsion = 20550.137849 eV Total energy + Delta-G solvation = -3375.811309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66229 -39.79007 -38.07085 -37.35471 -34.57359 -34.09382 -32.44251 -32.32285 -29.37326 -28.46913 -27.33548 -25.65890 -24.64191 -23.21687 -22.56362 -21.69653 -21.22622 -18.82535 -18.60043 -17.80089 -17.33103 -16.82314 -16.65915 -16.23040 -15.89767 -15.63454 -15.36895 -14.95694 -14.66496 -14.42688 -14.36323 -13.88506 -13.69501 -13.61758 -13.24466 -13.13791 -13.00614 -12.78916 -12.59014 -12.55025 -12.44229 -12.19937 -12.07090 -11.85997 -11.79295 -11.71192 -11.37976 -11.27872 -10.87397 -10.49496 -9.94995 -9.70580 -8.43387 -7.76509 -5.40842 -0.19164 0.45179 1.40774 1.42596 1.49354 1.65728 1.78496 2.51741 2.86085 3.29690 3.63952 3.77555 3.99653 4.05983 4.21218 4.31468 4.32202 4.34255 4.38074 4.48086 4.53328 4.57493 4.67458 4.72068 4.78778 4.86935 4.87488 4.94724 5.08034 5.11397 5.21679 5.27333 5.32047 5.37428 5.42162 5.52874 5.55364 5.58266 5.71468 5.80720 5.90176 6.01426 6.54876 6.88000 7.25576 7.91315 8.46176 9.18979 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.013170 B = 0.005974 C = 0.004433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.477160 B = 4686.189129 C = 6314.180736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C 0.152 3.848 4 N -0.596 5.596 5 C -0.240 4.240 6 H 0.038 0.962 7 C -0.034 4.034 8 N -0.918 5.918 9 Si 0.950 3.050 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.176 3.824 14 C -0.090 4.090 15 C -0.027 4.027 16 C -0.142 4.142 17 C -0.070 4.070 18 C -0.137 4.137 19 C -0.060 4.060 20 C -0.151 4.151 21 C 0.480 3.520 22 O -0.500 6.500 23 O -0.359 6.359 24 C 0.034 3.966 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.042 0.958 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.248 0.752 33 H 0.041 0.959 34 H 0.028 0.972 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.136 0.864 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.152 0.848 41 H 0.051 0.949 42 H 0.141 0.859 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.313 -1.498 -16.138 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.170 4.170 3 C 0.026 3.974 4 N -0.316 5.316 5 C -0.371 4.371 6 H 0.055 0.945 7 C -0.231 4.231 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.203 1.203 13 C 0.050 3.950 14 C -0.130 4.130 15 C -0.028 4.028 16 C -0.160 4.160 17 C -0.088 4.088 18 C -0.154 4.154 19 C -0.078 4.078 20 C -0.152 4.152 21 C 0.325 3.675 22 O -0.389 6.389 23 O -0.277 6.277 24 C -0.059 4.059 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.154 0.846 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.169 0.831 41 H 0.070 0.930 42 H 0.159 0.841 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.086 -1.421 -15.662 17.249 hybrid contribution 0.267 0.145 1.873 1.897 sum 7.353 -1.276 -13.789 15.679 Atomic orbital electron populations 1.21621 0.94614 1.01696 1.01436 1.21941 0.96120 0.99069 0.99913 1.20825 0.83076 0.93871 0.99586 1.44032 1.01373 1.85176 1.01013 1.18887 1.09682 1.18264 0.90312 0.94474 1.25838 1.00335 0.94708 1.02194 1.70112 1.38043 1.17201 1.30903 0.85634 0.77882 0.77511 0.81178 1.20892 1.21460 1.20271 1.20701 0.94443 0.92613 0.87243 1.21209 0.97629 1.00964 0.93172 1.20246 0.92123 0.94059 0.96409 1.21237 1.00954 1.02440 0.91396 1.21813 0.94818 0.93965 0.98197 1.21530 0.94504 1.00758 0.98632 1.21655 1.01127 0.94433 0.90600 1.19082 0.92909 1.11856 0.91346 1.21866 0.81425 0.73938 0.90256 1.91098 1.68316 1.44674 1.34772 1.86469 1.20526 1.83807 1.36857 1.23441 0.98816 1.01400 0.82246 0.92162 0.91626 0.93867 0.93260 0.94703 0.92593 0.95647 0.94253 0.94109 0.95376 0.92400 0.93739 0.84612 0.81803 0.81463 0.83062 0.92990 0.84079 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.91 71.98 0.71 -3.79 16 2 C -0.13 -5.44 6.26 30.59 0.19 -5.25 16 3 C 0.15 7.56 5.29 86.38 0.46 8.01 16 4 N -0.60 -32.16 2.40 -701.99 -1.68 -33.85 16 5 C -0.24 -14.35 9.43 84.03 0.79 -13.55 16 6 H 0.04 2.32 7.90 -2.91 -0.02 2.30 16 7 C -0.03 -2.02 4.99 84.86 0.42 -1.60 16 8 N -0.92 -56.63 11.57 21.65 0.25 -56.38 16 9 Si 0.95 47.91 29.59 68.60 2.03 49.94 16 10 H -0.28 -14.14 7.11 99.48 0.71 -13.43 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 13 C 0.18 8.36 5.19 86.38 0.45 8.81 16 14 C -0.09 -4.06 4.93 29.85 0.15 -3.91 16 15 C -0.03 -0.95 5.17 -19.60 -0.10 -1.05 16 16 C -0.14 -3.80 9.66 22.23 0.21 -3.58 16 17 C -0.07 -1.31 10.04 22.33 0.22 -1.09 16 18 C -0.14 -2.39 10.03 22.23 0.22 -2.17 16 19 C -0.06 -1.41 9.62 22.54 0.22 -1.19 16 20 C -0.15 -4.97 5.87 -20.10 -0.12 -5.08 16 21 C 0.48 18.18 7.77 70.33 0.55 18.72 16 22 O -0.50 -23.80 11.42 19.91 0.23 -23.57 16 23 O -0.36 -11.08 9.83 -56.22 -0.55 -11.63 16 24 C 0.03 0.89 10.56 113.37 1.20 2.09 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.06 3.17 5.69 -2.39 -0.01 3.16 16 31 H 0.03 1.19 8.07 -2.39 -0.02 1.17 16 32 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 33 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 34 H 0.03 1.42 6.52 -2.39 -0.02 1.40 16 35 H 0.06 3.13 5.92 -2.39 -0.01 3.12 16 36 H 0.04 2.03 8.02 -2.39 -0.02 2.01 16 37 H 0.14 3.34 8.05 -2.91 -0.02 3.31 16 38 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.15 2.89 7.62 -2.91 -0.02 2.86 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.14 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -74.63 356.26 6.83 -67.80 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.98 Total: 12.33 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.58 Total: -4.63 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -1.43 Total: -90.23 kcal Atomic # 8 Polarization: -34.88 SS G_CDS: -0.33 Total: -35.21 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -74.63 6.83 -67.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187053120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.570 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds