Wall clock time and date at job start Tue Mar 31 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99685 * 3 2 1 14 14 C 1.34773 * 120.00050 * 85.00124 * 13 3 2 15 15 O 1.21272 * 120.00064 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47045 * 180.02562 * 16 14 13 18 18 C 1.38258 * 119.99525 * 269.72266 * 17 16 14 19 19 C 1.38219 * 119.99749 * 179.80953 * 18 17 16 20 20 C 1.38260 * 119.99557 * 0.42459 * 19 18 17 21 21 C 1.38211 * 120.00112 * 359.81016 * 20 19 18 22 22 C 1.50706 * 119.99718 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.47024 * 270.02081 * 22 21 20 24 24 C 1.42897 * 113.99893 * 180.02562 * 23 22 21 25 25 C 1.38212 * 119.99946 * 90.00325 * 17 16 14 26 26 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 27 27 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 28 28 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 30 30 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00030 * 265.00025 * 13 3 2 33 33 H 1.08999 * 109.47446 * 299.99957 * 16 14 13 34 34 H 1.08996 * 109.47464 * 59.99678 * 16 14 13 35 35 H 1.07992 * 120.00160 * 0.02562 * 18 17 16 36 36 H 1.07989 * 120.00266 * 180.21174 * 19 18 17 37 37 H 1.07999 * 119.99630 * 179.79437 * 20 19 18 38 38 H 1.08991 * 109.47377 * 30.01974 * 22 21 20 39 39 H 1.09001 * 109.46993 * 150.02455 * 22 21 20 40 40 H 1.09003 * 109.47241 * 60.00658 * 24 23 22 41 41 H 1.09006 * 109.46941 * 179.97438 * 24 23 22 42 42 H 1.08993 * 109.47515 * 300.00241 * 24 23 22 43 43 H 1.07996 * 120.00369 * 359.97364 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.4415 2.1144 2.0851 11 1 6.4394 -0.3097 2.1552 12 1 6.6135 0.8418 0.0281 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3392 2.6326 -0.4343 16 6 0.0368 3.3385 -2.6546 17 6 -1.3608 3.8869 -2.5230 18 6 -2.4459 3.1048 -2.8728 19 6 -3.7279 3.6063 -2.7483 20 6 -3.9245 4.8931 -2.2824 21 6 -2.8394 5.6765 -1.9373 22 6 -3.0538 7.0793 -1.4300 23 8 -3.0574 7.9890 -2.5321 24 6 -3.2541 9.3541 -2.1582 25 6 -1.5573 5.1735 -2.0581 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0617 2.9496 32 1 2.2720 2.1231 -1.9978 33 1 0.7282 4.1540 -2.8668 34 1 0.0682 2.6145 -3.4688 35 1 -2.2921 2.1009 -3.2399 36 1 -4.5757 2.9943 -3.0183 37 1 -4.9261 5.2861 -2.1883 38 1 -4.0098 7.1353 -0.9096 39 1 -2.2500 7.3440 -0.7430 40 1 -2.4542 9.6658 -1.4865 41 1 -3.2435 9.9803 -3.0504 42 1 -4.2141 9.4577 -1.6525 43 1 -0.7094 5.7858 -1.7888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187613165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:04 Heat of formation + Delta-G solvation = -70.797834 kcal Electronic energy + Delta-G solvation = -22911.634034 eV Core-core repulsion = 19535.408049 eV Total energy + Delta-G solvation = -3376.225985 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.78184 -38.68254 -37.59586 -35.05412 -32.92069 -32.31414 -31.63823 -30.83016 -27.97728 -27.33758 -26.43329 -25.40075 -23.06950 -22.11536 -21.15066 -19.92083 -19.24877 -17.11226 -16.64261 -16.41283 -16.16393 -15.74444 -15.48355 -15.22989 -15.08879 -14.34460 -14.26622 -13.99118 -13.12233 -13.00156 -12.69412 -12.63994 -12.56077 -12.33805 -12.23049 -11.65035 -11.59091 -11.29511 -11.24106 -11.01261 -10.90558 -10.86104 -10.80031 -10.30695 -10.15031 -9.88391 -9.60746 -9.08102 -8.99752 -8.72419 -8.51566 -8.44460 -7.77610 -6.11510 -4.20895 1.37805 1.52536 3.24441 3.31258 3.32880 3.47033 3.53101 4.00421 4.27217 4.48145 4.75628 4.78681 4.95002 5.09298 5.10879 5.17622 5.19664 5.22994 5.29206 5.42497 5.47255 5.56026 5.69616 5.70475 5.75549 6.12262 6.17344 6.41096 6.47871 6.54360 6.62452 6.68522 6.73935 6.93651 7.05842 7.10379 7.22525 7.39724 7.49932 7.63668 7.76089 7.92406 8.20081 8.71379 8.80113 9.19716 9.46973 10.93741 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.003307 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.844573 B = 8465.403711 C = 9217.018499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.502 3.498 15 O -0.541 6.541 16 C -0.109 4.109 17 C -0.054 4.054 18 C -0.098 4.098 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.095 4.095 22 C 0.104 3.896 23 O -0.386 6.386 24 C 0.030 3.970 25 C -0.083 4.083 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.021 0.979 29 H 0.030 0.970 30 H 0.098 0.902 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 10.656 -10.418 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.419 6.419 16 C -0.149 4.149 17 C -0.054 4.054 18 C -0.116 4.116 19 C -0.141 4.141 20 C -0.123 4.123 21 C -0.095 4.095 22 C 0.028 3.972 23 O -0.305 6.305 24 C -0.067 4.067 25 C -0.101 4.101 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.100 10.459 -9.716 18.713 hybrid contribution 1.294 0.041 0.101 1.298 sum -10.806 10.499 -9.615 17.873 Atomic orbital electron populations 1.21828 0.98341 0.97919 1.01251 1.21928 0.92602 0.99895 1.02181 1.18753 0.94073 0.89132 0.81130 0.93416 1.21249 0.90804 1.39031 1.06126 0.92125 1.24892 0.98559 0.94824 0.95449 1.69898 1.35096 1.37623 1.09360 0.86469 0.84939 0.77626 0.78177 1.20594 1.21095 1.19860 1.46499 1.14667 1.56255 1.18504 1.20202 0.82790 0.79528 0.88867 1.90687 1.51307 1.59486 1.40420 1.20775 0.94538 1.01470 0.98137 1.19313 0.94217 0.93718 0.98191 1.21019 0.92255 0.99127 0.99204 1.21025 0.96914 0.95637 1.00506 1.20922 0.98056 0.94317 0.98987 1.19431 0.93610 0.94334 1.02089 1.21349 1.00712 0.86646 0.88492 1.87970 1.93899 1.16257 1.32402 1.22748 0.99626 0.82991 1.01289 1.20841 0.96285 0.95189 0.97793 0.93219 0.94253 0.95975 0.95116 0.88384 0.92596 0.78039 0.88566 0.88595 0.86179 0.86098 0.86404 0.92518 0.92301 0.93993 0.89668 0.94144 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.52 37.16 0.32 -2.74 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.77 2.24 -69.08 -0.15 6.62 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 6 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 13 N -0.71 -14.42 5.02 -54.93 -0.28 -14.69 16 14 C 0.50 9.67 6.39 -10.99 -0.07 9.60 16 15 O -0.54 -12.49 13.17 5.56 0.07 -12.41 16 16 C -0.11 -1.55 5.83 -29.03 -0.17 -1.72 16 17 C -0.05 -0.80 4.37 -104.62 -0.46 -1.26 16 18 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 19 C -0.12 -1.56 10.05 -39.58 -0.40 -1.95 16 20 C -0.10 -1.33 9.70 -39.58 -0.38 -1.71 16 21 C -0.09 -1.28 5.51 -104.62 -0.58 -1.86 16 22 C 0.10 1.19 6.06 36.01 0.22 1.41 16 23 O -0.39 -4.60 10.69 -35.23 -0.38 -4.97 16 24 C 0.03 0.24 11.01 101.05 1.11 1.36 16 25 C -0.08 -1.22 9.36 -39.59 -0.37 -1.59 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 27 H 0.04 0.85 5.65 -51.93 -0.29 0.56 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.77 8.54 -40.82 -0.35 6.42 16 33 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 34 H 0.10 1.13 8.08 -51.93 -0.42 0.72 16 35 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 40 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 43 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -31.48 356.13 -8.24 -39.73 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.78 Total: 7.05 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.86 Total: -11.48 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.35 Total: -38.80 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.30 Total: -17.39 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.48 -8.24 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187613165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.073 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds