Wall clock time and date at job start Tue Mar 31 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09001 * 109.47502 * 55.00061 * 3 2 1 5 5 C 1.50706 * 109.47238 * 174.99896 * 3 2 1 6 6 H 1.07995 * 120.00167 * 119.72028 * 5 3 2 7 7 C 1.37879 * 119.99394 * 299.99727 * 5 3 2 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47474 * 90.00322 * 9 7 5 11 11 H 1.48507 * 109.46754 * 210.00056 * 9 7 5 12 12 H 1.48498 * 109.47278 * 329.99887 * 9 7 5 13 13 N 1.46500 * 109.47007 * 294.99685 * 3 2 1 14 14 C 1.34773 * 120.00050 * 85.00124 * 13 3 2 15 15 O 1.21272 * 120.00064 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.50704 * 109.47045 * 180.02562 * 16 14 13 18 18 C 1.38258 * 119.99525 * 269.72266 * 17 16 14 19 19 C 1.38219 * 119.99749 * 179.80953 * 18 17 16 20 20 C 1.38260 * 119.99557 * 0.42459 * 19 18 17 21 21 C 1.38211 * 120.00112 * 359.81016 * 20 19 18 22 22 C 1.50706 * 119.99718 * 179.97438 * 21 20 19 23 23 O 1.42904 * 109.47024 * 270.02081 * 22 21 20 24 24 C 1.42897 * 113.99893 * 180.02562 * 23 22 21 25 25 C 1.38212 * 119.99946 * 90.00325 * 17 16 14 26 26 H 1.08993 * 109.47331 * 300.00296 * 1 2 3 27 27 H 1.09001 * 109.46791 * 60.00740 * 1 2 3 28 28 H 1.08996 * 109.46972 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47331 * 239.99704 * 2 1 3 30 30 H 1.09002 * 109.46801 * 119.99817 * 2 1 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 32 32 H 0.97002 * 120.00030 * 265.00025 * 13 3 2 33 33 H 1.08999 * 109.47446 * 299.99957 * 16 14 13 34 34 H 1.08996 * 109.47464 * 59.99678 * 16 14 13 35 35 H 1.07992 * 120.00160 * 0.02562 * 18 17 16 36 36 H 1.07989 * 120.00266 * 180.21174 * 19 18 17 37 37 H 1.07999 * 119.99630 * 179.79437 * 20 19 18 38 38 H 1.08991 * 109.47377 * 30.01974 * 22 21 20 39 39 H 1.09001 * 109.46993 * 150.02455 * 22 21 20 40 40 H 1.09003 * 109.47241 * 60.00658 * 24 23 22 41 41 H 1.09006 * 109.46941 * 179.97438 * 24 23 22 42 42 H 1.08993 * 109.47515 * 300.00241 * 24 23 22 43 43 H 1.07996 * 120.00369 * 359.97364 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1474 1.8849 -0.6544 7 6 4.1432 0.8785 1.2281 8 7 3.4061 0.3367 2.1730 9 14 6.0048 0.8814 1.3820 10 1 6.4415 2.1144 2.0851 11 1 6.4394 -0.3097 2.1552 12 1 6.6135 0.8418 0.0281 13 7 1.6524 2.0974 -1.2518 14 6 0.4352 2.6643 -1.3671 15 8 -0.3392 2.6326 -0.4343 16 6 0.0368 3.3385 -2.6546 17 6 -1.3608 3.8869 -2.5230 18 6 -2.4459 3.1048 -2.8728 19 6 -3.7279 3.6063 -2.7483 20 6 -3.9245 4.8931 -2.2824 21 6 -2.8394 5.6765 -1.9373 22 6 -3.0538 7.0793 -1.4300 23 8 -3.0574 7.9890 -2.5321 24 6 -3.2541 9.3541 -2.1582 25 6 -1.5573 5.1735 -2.0581 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0617 2.9496 32 1 2.2720 2.1231 -1.9978 33 1 0.7282 4.1540 -2.8668 34 1 0.0682 2.6145 -3.4688 35 1 -2.2921 2.1009 -3.2399 36 1 -4.5757 2.9943 -3.0183 37 1 -4.9261 5.2861 -2.1883 38 1 -4.0098 7.1353 -0.9096 39 1 -2.2500 7.3440 -0.7430 40 1 -2.4542 9.6658 -1.4865 41 1 -3.2435 9.9803 -3.0504 42 1 -4.2141 9.4577 -1.6525 43 1 -0.7094 5.7858 -1.7888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187613165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:04 Heat of formation + Delta-G solvation = -90.228247 kcal Electronic energy + Delta-G solvation = -22912.476600 eV Core-core repulsion = 19535.408049 eV Total energy + Delta-G solvation = -3377.068551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.02520 -40.00971 -38.49298 -36.88676 -34.29344 -34.00569 -32.80711 -32.44093 -29.45626 -28.32197 -27.89547 -26.21971 -24.98345 -23.22223 -22.46254 -21.45362 -20.92108 -18.86098 -17.62868 -17.39540 -17.30215 -17.12450 -16.99606 -16.45053 -16.33817 -15.95443 -15.57200 -15.06538 -14.69828 -14.59049 -14.04840 -13.94997 -13.57905 -13.52114 -13.30776 -13.20217 -13.14568 -12.87503 -12.73154 -12.63155 -12.34165 -12.14997 -12.06891 -11.90982 -11.80444 -11.56117 -11.03535 -10.66974 -10.65631 -10.49040 -9.73859 -9.57622 -9.55666 -8.14997 -6.32254 0.36481 0.49211 1.45010 1.45165 1.55845 1.95250 2.37144 2.55812 2.87590 3.14272 3.23740 3.72062 3.87604 4.00178 4.19754 4.24965 4.31538 4.36934 4.46082 4.50883 4.53395 4.55398 4.59334 4.62290 4.66209 4.78741 4.79472 4.85664 5.07935 5.12905 5.17094 5.28265 5.46397 5.54400 5.58335 5.62941 5.67330 5.69222 5.82521 5.96954 6.10553 6.19110 6.19737 6.77117 7.07573 7.35690 7.68119 8.90187 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.003307 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.844573 B = 8465.403711 C = 9217.018499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.260 1.260 13 N -0.708 5.708 14 C 0.499 3.501 15 O -0.582 6.582 16 C -0.095 4.095 17 C -0.074 4.074 18 C -0.113 4.113 19 C -0.126 4.126 20 C -0.110 4.110 21 C -0.108 4.108 22 C 0.105 3.895 23 O -0.409 6.409 24 C 0.023 3.977 25 C -0.104 4.104 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.717 11.149 -12.227 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.184 1.184 13 N -0.358 5.358 14 C 0.287 3.713 15 O -0.463 6.463 16 C -0.135 4.135 17 C -0.074 4.074 18 C -0.131 4.131 19 C -0.144 4.144 20 C -0.128 4.128 21 C -0.108 4.108 22 C 0.029 3.971 23 O -0.329 6.329 24 C -0.072 4.072 25 C -0.122 4.122 26 H 0.041 0.959 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.206 10.972 -11.571 20.082 hybrid contribution 1.239 -0.045 0.675 1.412 sum -10.967 10.927 -10.896 18.932 Atomic orbital electron populations 1.21656 0.96965 0.98973 1.00256 1.21774 0.93732 0.99274 1.01171 1.18307 0.93442 0.89097 0.81581 0.98742 1.21613 0.91585 1.38824 1.06509 0.91011 1.25777 1.03250 0.94440 0.95123 1.70056 1.37030 1.38447 1.09902 0.85393 0.79249 0.77354 0.78619 1.20509 1.21058 1.18370 1.46273 1.15716 1.56328 1.17479 1.21065 0.81620 0.78522 0.90141 1.90671 1.52372 1.60807 1.42454 1.20728 0.94810 1.02332 0.95591 1.19473 0.94720 0.94082 0.99169 1.21293 0.92659 0.99669 0.99454 1.21393 0.97380 0.95955 0.99659 1.21273 0.98945 0.94339 0.98223 1.19772 0.93562 0.95585 1.01888 1.21347 1.01546 0.85768 0.88395 1.87925 1.94152 1.17824 1.32954 1.22957 1.00591 0.81373 1.02317 1.21020 0.96979 0.95605 0.98645 0.95928 0.93453 0.93758 0.94011 0.91280 0.92687 0.76145 0.86359 0.85583 0.85033 0.83512 0.84105 0.90865 0.92415 0.93455 0.88353 0.92756 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.52 71.98 0.61 -4.87 16 2 C -0.12 -5.94 5.45 30.59 0.17 -5.78 16 3 C 0.28 14.27 2.24 44.25 0.10 14.37 16 4 H -0.01 -0.33 7.58 -2.39 -0.02 -0.34 16 5 C -0.55 -28.83 8.73 25.60 0.22 -28.60 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 7 C 0.01 0.75 5.29 84.66 0.45 1.20 16 8 N -0.92 -52.67 11.29 21.45 0.24 -52.42 16 9 Si 0.97 42.04 29.54 68.60 2.03 44.07 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 13 N -0.71 -28.48 5.02 -446.10 -2.24 -30.72 16 14 C 0.50 19.08 6.39 87.66 0.56 19.64 16 15 O -0.58 -27.45 13.17 -3.01 -0.04 -27.49 16 16 C -0.10 -2.54 5.83 29.10 0.17 -2.37 16 17 C -0.07 -2.13 4.37 -19.86 -0.09 -2.22 16 18 C -0.11 -2.98 9.70 22.27 0.22 -2.76 16 19 C -0.13 -2.96 10.05 22.27 0.22 -2.74 16 20 C -0.11 -2.61 9.70 22.27 0.22 -2.39 16 21 C -0.11 -2.86 5.51 -19.87 -0.11 -2.96 16 22 C 0.11 2.32 6.06 71.24 0.43 2.76 16 23 O -0.41 -9.28 10.69 -148.98 -1.59 -10.87 16 24 C 0.02 0.34 11.01 113.37 1.25 1.59 16 25 C -0.10 -3.03 9.36 22.27 0.21 -2.83 16 26 H 0.02 1.10 7.85 -2.39 -0.02 1.08 16 27 H 0.05 2.04 5.65 -2.39 -0.01 2.02 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.07 3.84 5.95 -2.39 -0.01 3.82 16 31 H 0.26 14.41 8.31 -92.71 -0.77 13.63 16 32 H 0.40 13.52 8.54 -92.71 -0.79 12.72 16 33 H 0.12 2.64 8.08 -2.39 -0.02 2.62 16 34 H 0.13 2.61 8.08 -2.39 -0.02 2.59 16 35 H 0.13 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.15 2.57 8.06 -2.92 -0.02 2.55 16 37 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 38 H 0.07 1.33 8.08 -2.39 -0.02 1.31 16 39 H 0.06 1.24 8.09 -2.39 -0.02 1.23 16 40 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -69.77 356.13 3.23 -66.55 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 0.20 Total: 28.86 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 4.63 Total: -17.98 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.00 Total: -83.14 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -1.63 Total: -38.36 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -69.77 3.23 -66.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187613165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.682 kcal (2) G-P(sol) polarization free energy of solvation -69.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds