Wall clock time and date at job start Tue Mar 31 2020 06:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 H 1.09004 * 109.47165 * 304.99872 * 3 2 1 5 5 C 1.50697 * 109.47228 * 184.99867 * 3 2 1 6 6 H 1.08004 * 120.00110 * 239.99750 * 5 3 2 7 7 C 1.37877 * 119.99923 * 59.99543 * 5 3 2 8 8 N 1.31517 * 120.00127 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00003 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47189 * 90.00057 * 9 7 5 11 11 H 1.48500 * 109.47217 * 210.00273 * 9 7 5 12 12 H 1.48496 * 109.47189 * 330.00066 * 9 7 5 13 13 N 1.46496 * 109.47323 * 64.99534 * 3 2 1 14 14 C 1.34776 * 120.00218 * 274.99725 * 13 3 2 15 15 O 1.21279 * 119.99851 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99991 * 180.02562 * 14 13 3 17 17 C 1.50701 * 109.46951 * 180.02562 * 16 14 13 18 18 C 1.38253 * 119.99890 * 270.01739 * 17 16 14 19 19 C 1.38212 * 119.99859 * 179.97438 * 18 17 16 20 20 C 1.38255 * 120.00284 * 0.02562 * 19 18 17 21 21 C 1.38217 * 119.99740 * 0.02562 * 20 19 18 22 22 C 1.50706 * 119.99801 * 179.97438 * 21 20 19 23 23 O 1.42897 * 109.47007 * 269.94888 * 22 21 20 24 24 C 1.42893 * 114.00423 * 179.97438 * 23 22 21 25 25 C 1.38215 * 119.99815 * 89.99902 * 17 16 14 26 26 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47063 * 300.00088 * 1 2 3 28 28 H 1.08999 * 109.47362 * 60.00455 * 1 2 3 29 29 H 1.08998 * 109.47063 * 239.99912 * 2 1 3 30 30 H 1.09001 * 109.46883 * 119.99748 * 2 1 3 31 31 H 0.97003 * 120.00166 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99958 * 95.00799 * 13 3 2 33 33 H 1.08990 * 109.47329 * 60.00003 * 16 14 13 34 34 H 1.09006 * 109.47198 * 299.99893 * 16 14 13 35 35 H 1.08002 * 120.00364 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.99961 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.00435 * 180.02562 * 20 19 18 38 38 H 1.08994 * 109.46953 * 29.94909 * 22 21 20 39 39 H 1.08996 * 109.46834 * 149.95334 * 22 21 20 40 40 H 1.09002 * 109.47145 * 59.99611 * 24 23 22 41 41 H 1.08998 * 109.47890 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.47128 * 300.00617 * 24 23 22 43 43 H 1.07995 * 120.00164 * 359.72517 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8802 -1.3810 10 1 6.5539 -0.3518 -0.7596 11 1 6.3836 0.9216 -2.8163 12 1 6.5575 2.0721 -0.6889 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3397 2.6319 0.4342 16 6 0.0365 3.3388 2.6542 17 6 -1.3615 3.8861 2.5228 18 6 -1.5592 5.1727 2.0571 19 6 -2.8413 5.6744 1.9360 20 6 -3.9262 4.8899 2.2812 21 6 -3.7284 3.6040 2.7479 22 6 -4.9109 2.7490 3.1247 23 8 -5.2199 2.9457 4.5060 24 6 -6.3326 2.1772 4.9678 25 6 -2.4460 3.1016 2.8676 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0605 -2.9502 32 1 2.2718 2.1234 1.9977 33 1 0.7278 4.1542 2.8664 34 1 0.0677 2.6147 3.4685 35 1 -0.7118 5.7854 1.7870 36 1 -2.9958 6.6793 1.5718 37 1 -4.9280 5.2818 2.1863 38 1 -5.7707 3.0297 2.5165 39 1 -4.6705 1.7000 2.9520 40 1 -6.1222 1.1161 4.8332 41 1 -6.5028 2.3829 6.0246 42 1 -7.2218 2.4463 4.3977 43 1 -2.2917 2.0949 3.2270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187613186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:07 Heat of formation + Delta-G solvation = -70.811846 kcal Electronic energy + Delta-G solvation = -22953.548052 eV Core-core repulsion = 19577.321460 eV Total energy + Delta-G solvation = -3376.226593 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.78323 -38.68321 -37.60214 -35.05494 -32.92180 -32.31428 -31.63142 -30.84222 -27.96685 -27.35222 -26.43411 -25.40525 -23.07705 -22.09659 -21.17010 -19.91832 -19.24964 -17.11078 -16.64866 -16.41622 -16.16360 -15.75502 -15.47500 -15.21277 -15.12029 -14.35418 -14.29792 -13.92096 -13.16901 -13.00600 -12.68588 -12.63309 -12.57072 -12.33128 -12.23018 -11.68586 -11.56470 -11.28802 -11.24717 -11.03170 -10.92234 -10.84776 -10.78568 -10.30830 -10.15115 -9.89152 -9.61658 -9.08198 -8.99207 -8.72396 -8.51895 -8.44584 -7.77609 -6.11527 -4.20908 1.37875 1.52416 3.24170 3.31260 3.33203 3.46977 3.52745 4.00195 4.27136 4.48076 4.75271 4.78261 4.95073 5.08599 5.10263 5.17349 5.19630 5.22615 5.28529 5.41707 5.47137 5.56126 5.69548 5.70873 5.75358 6.12098 6.17356 6.40418 6.47466 6.54598 6.62271 6.68020 6.74005 6.93024 7.05448 7.10368 7.22160 7.39317 7.49809 7.63659 7.75891 7.92399 8.19947 8.71296 8.80066 9.19662 9.46959 10.93727 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.003182 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.066218 B = 8796.011752 C = 9279.250030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.711 5.711 14 C 0.502 3.498 15 O -0.541 6.541 16 C -0.109 4.109 17 C -0.054 4.054 18 C -0.097 4.097 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.095 4.095 22 C 0.104 3.896 23 O -0.386 6.386 24 C 0.030 3.970 25 C -0.083 4.083 26 H 0.021 0.979 27 H 0.038 0.962 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.264 0.736 32 H 0.388 0.612 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.771 5.612 12.384 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.419 6.419 16 C -0.149 4.149 17 C -0.055 4.055 18 C -0.116 4.116 19 C -0.141 4.141 20 C -0.123 4.123 21 C -0.095 4.095 22 C 0.028 3.972 23 O -0.305 6.305 24 C -0.067 4.067 25 C -0.101 4.101 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.058 0.942 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.191 5.597 11.608 19.169 hybrid contribution 1.150 -0.309 0.037 1.192 sum -13.040 5.288 11.645 18.265 Atomic orbital electron populations 1.21831 0.98367 0.97895 1.01250 1.21932 0.92587 0.99911 1.02182 1.18751 0.94075 0.89120 0.81139 0.93405 1.21246 0.90805 1.38913 1.06231 0.92125 1.24892 0.98556 0.94867 0.95407 1.69899 1.35087 1.37663 1.09340 0.86468 0.84960 0.78420 0.77364 1.20569 1.21095 1.19884 1.46497 1.14673 1.56244 1.18507 1.20208 0.82791 0.79535 0.88859 1.90689 1.51297 1.59491 1.40426 1.20775 0.94511 1.01507 0.98123 1.19314 0.94001 0.93911 0.98236 1.21032 0.97227 0.95285 0.98015 1.21029 0.92508 0.99812 1.00730 1.20923 0.98773 0.93380 0.99200 1.19429 0.93600 0.95086 1.01384 1.21344 0.95123 0.98139 0.82570 1.87969 1.50122 1.66972 1.25462 1.22747 0.88598 0.95135 1.00170 1.20827 0.91411 0.99200 0.98672 0.95998 0.94254 0.93216 0.88381 0.95116 0.92594 0.78040 0.88505 0.88651 0.86107 0.86079 0.86404 0.92521 0.92334 0.94002 0.89662 0.94150 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.74 16 2 C -0.13 -3.10 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.77 2.24 -69.09 -0.15 6.62 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.75 11.29 55.43 0.63 -24.12 16 9 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 N -0.71 -14.41 5.02 -54.94 -0.28 -14.69 16 14 C 0.50 9.66 6.39 -10.98 -0.07 9.59 16 15 O -0.54 -12.48 13.17 5.56 0.07 -12.41 16 16 C -0.11 -1.55 5.83 -29.03 -0.17 -1.72 16 17 C -0.05 -0.81 4.37 -104.62 -0.46 -1.26 16 18 C -0.10 -1.37 9.70 -39.59 -0.38 -1.75 16 19 C -0.12 -1.56 10.05 -39.58 -0.40 -1.96 16 20 C -0.10 -1.32 9.70 -39.58 -0.38 -1.71 16 21 C -0.09 -1.28 5.51 -104.62 -0.58 -1.86 16 22 C 0.10 1.19 6.06 36.01 0.22 1.40 16 23 O -0.39 -4.56 10.69 -35.23 -0.38 -4.94 16 24 C 0.03 0.24 11.01 101.05 1.11 1.35 16 25 C -0.08 -1.21 9.36 -39.58 -0.37 -1.58 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.10 2.65 5.95 -51.93 -0.31 2.34 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.39 6.76 8.54 -40.82 -0.35 6.41 16 33 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 34 H 0.10 1.15 8.09 -51.93 -0.42 0.73 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 39 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.04 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -31.49 356.13 -8.24 -39.73 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -6.78 Total: 7.01 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: -1.86 Total: -11.49 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.35 Total: -38.81 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.30 Total: -17.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.49 -8.24 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187613186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.077 kcal (2) G-P(sol) polarization free energy of solvation -31.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds