Wall clock time and date at job start Tue Mar 31 2020 06:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46820 * 2 1 4 4 H 1.09004 * 109.47165 * 304.99872 * 3 2 1 5 5 C 1.50697 * 109.47228 * 184.99867 * 3 2 1 6 6 H 1.08004 * 120.00110 * 239.99750 * 5 3 2 7 7 C 1.37877 * 119.99923 * 59.99543 * 5 3 2 8 8 N 1.31517 * 120.00127 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00003 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47189 * 90.00057 * 9 7 5 11 11 H 1.48500 * 109.47217 * 210.00273 * 9 7 5 12 12 H 1.48496 * 109.47189 * 330.00066 * 9 7 5 13 13 N 1.46496 * 109.47323 * 64.99534 * 3 2 1 14 14 C 1.34776 * 120.00218 * 274.99725 * 13 3 2 15 15 O 1.21279 * 119.99851 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99991 * 180.02562 * 14 13 3 17 17 C 1.50701 * 109.46951 * 180.02562 * 16 14 13 18 18 C 1.38253 * 119.99890 * 270.01739 * 17 16 14 19 19 C 1.38212 * 119.99859 * 179.97438 * 18 17 16 20 20 C 1.38255 * 120.00284 * 0.02562 * 19 18 17 21 21 C 1.38217 * 119.99740 * 0.02562 * 20 19 18 22 22 C 1.50706 * 119.99801 * 179.97438 * 21 20 19 23 23 O 1.42897 * 109.47007 * 269.94888 * 22 21 20 24 24 C 1.42893 * 114.00423 * 179.97438 * 23 22 21 25 25 C 1.38215 * 119.99815 * 89.99902 * 17 16 14 26 26 H 1.09005 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47063 * 300.00088 * 1 2 3 28 28 H 1.08999 * 109.47362 * 60.00455 * 1 2 3 29 29 H 1.08998 * 109.47063 * 239.99912 * 2 1 3 30 30 H 1.09001 * 109.46883 * 119.99748 * 2 1 3 31 31 H 0.97003 * 120.00166 * 179.97438 * 8 7 5 32 32 H 0.96999 * 119.99958 * 95.00799 * 13 3 2 33 33 H 1.08990 * 109.47329 * 60.00003 * 16 14 13 34 34 H 1.09006 * 109.47198 * 299.99893 * 16 14 13 35 35 H 1.08002 * 120.00364 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.99961 * 180.02562 * 19 18 17 37 37 H 1.07997 * 120.00435 * 180.02562 * 20 19 18 38 38 H 1.08994 * 109.46953 * 29.94909 * 22 21 20 39 39 H 1.08996 * 109.46834 * 149.95334 * 22 21 20 40 40 H 1.09002 * 109.47145 * 59.99611 * 24 23 22 41 41 H 1.08998 * 109.47890 * 180.02562 * 24 23 22 42 42 H 1.09007 * 109.47128 * 300.00617 * 24 23 22 43 43 H 1.07995 * 120.00164 * 359.72517 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8891 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8802 -1.3810 10 1 6.5539 -0.3518 -0.7596 11 1 6.3836 0.9216 -2.8163 12 1 6.5575 2.0721 -0.6889 13 7 1.6523 2.0975 1.2517 14 6 0.4350 2.6645 1.3668 15 8 -0.3397 2.6319 0.4342 16 6 0.0365 3.3388 2.6542 17 6 -1.3615 3.8861 2.5228 18 6 -1.5592 5.1727 2.0571 19 6 -2.8413 5.6744 1.9360 20 6 -3.9262 4.8899 2.2812 21 6 -3.7284 3.6040 2.7479 22 6 -4.9109 2.7490 3.1247 23 8 -5.2199 2.9457 4.5060 24 6 -6.3326 2.1772 4.9678 25 6 -2.4460 3.1016 2.8676 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0605 -2.9502 32 1 2.2718 2.1234 1.9977 33 1 0.7278 4.1542 2.8664 34 1 0.0677 2.6147 3.4685 35 1 -0.7118 5.7854 1.7870 36 1 -2.9958 6.6793 1.5718 37 1 -4.9280 5.2818 2.1863 38 1 -5.7707 3.0297 2.5165 39 1 -4.6705 1.7000 2.9520 40 1 -6.1222 1.1161 4.8332 41 1 -6.5028 2.3829 6.0246 42 1 -7.2218 2.4463 4.3977 43 1 -2.2917 2.0949 3.2270 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187613186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:06 Heat of formation + Delta-G solvation = -90.229499 kcal Electronic energy + Delta-G solvation = -22954.390065 eV Core-core repulsion = 19577.321460 eV Total energy + Delta-G solvation = -3377.068605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.02586 -40.00775 -38.48857 -36.88755 -34.29249 -34.00697 -32.78898 -32.46632 -29.44875 -28.32675 -27.89068 -26.21276 -24.98898 -23.20566 -22.48472 -21.45138 -20.92102 -18.85886 -17.62939 -17.38756 -17.29108 -17.08015 -17.05729 -16.42632 -16.35366 -15.95964 -15.57513 -15.01517 -14.73394 -14.59372 -14.11017 -13.88926 -13.59771 -13.50951 -13.30842 -13.18690 -13.14809 -12.89740 -12.73092 -12.61216 -12.32996 -12.16086 -12.07967 -11.90618 -11.80430 -11.57582 -11.03169 -10.66109 -10.65472 -10.49226 -9.73932 -9.57381 -9.56031 -8.14958 -6.32191 0.36296 0.49207 1.44929 1.45532 1.55850 1.95210 2.37170 2.55830 2.87742 3.14360 3.24044 3.72106 3.87891 4.00366 4.20013 4.24591 4.32066 4.37088 4.46378 4.50022 4.54053 4.56142 4.58338 4.62756 4.66231 4.77128 4.79691 4.86556 5.07492 5.12204 5.17490 5.27428 5.45653 5.54216 5.58009 5.62992 5.67217 5.69156 5.82111 5.96895 6.10417 6.19421 6.20076 6.77135 7.07545 7.35772 7.68087 8.90254 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.003182 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.066218 B = 8796.011752 C = 9279.250030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.280 3.720 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.708 5.708 14 C 0.499 3.501 15 O -0.582 6.582 16 C -0.095 4.095 17 C -0.074 4.074 18 C -0.115 4.115 19 C -0.127 4.127 20 C -0.110 4.110 21 C -0.108 4.108 22 C 0.106 3.894 23 O -0.409 6.409 24 C 0.024 3.976 25 C -0.102 4.102 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.022 0.978 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.264 0.736 32 H 0.404 0.596 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.844 6.155 14.145 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.358 5.358 14 C 0.286 3.714 15 O -0.463 6.463 16 C -0.135 4.135 17 C -0.075 4.075 18 C -0.133 4.133 19 C -0.145 4.145 20 C -0.128 4.128 21 C -0.108 4.108 22 C 0.030 3.970 23 O -0.329 6.329 24 C -0.072 4.072 25 C -0.120 4.120 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.239 0.761 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.164 0.836 37 H 0.159 0.841 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.263 6.151 13.419 20.526 hybrid contribution 1.068 -0.446 -0.507 1.263 sum -13.195 5.704 12.912 19.323 Atomic orbital electron populations 1.21658 0.97018 0.98933 1.00233 1.21781 0.93688 0.99344 1.01164 1.18304 0.93454 0.89054 0.81603 0.98676 1.21607 0.91569 1.38709 1.06600 0.91004 1.25778 1.03248 0.94481 0.95081 1.70058 1.37021 1.38500 1.09885 0.85387 0.79242 0.78868 0.77087 1.19713 1.21384 1.18862 1.46271 1.15726 1.56314 1.17485 1.21070 0.81613 0.78544 0.90127 1.90673 1.52341 1.60816 1.42470 1.20728 0.94863 1.02426 0.95443 1.19472 0.94244 0.94509 0.99227 1.21294 0.98281 0.95419 0.98308 1.21380 0.92079 1.00980 1.00027 1.21273 0.99975 0.93127 0.98403 1.19780 0.94030 0.95836 1.01115 1.21344 0.94946 0.97817 0.82912 1.87923 1.51586 1.67876 1.25494 1.22956 0.88010 0.95184 1.01079 1.21015 0.92083 0.99468 0.99416 0.93802 0.93551 0.95870 0.91238 0.94064 0.92686 0.76143 0.85872 0.86067 0.85317 0.83647 0.84110 0.90923 0.92244 0.93368 0.88388 0.92809 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.89 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.27 2.24 44.24 0.10 14.37 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.30 16 5 C -0.55 -28.77 8.73 25.60 0.22 -28.55 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -52.67 11.29 21.45 0.24 -52.42 16 9 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 13 N -0.71 -28.47 5.02 -446.11 -2.24 -30.71 16 14 C 0.50 19.07 6.39 87.66 0.56 19.63 16 15 O -0.58 -27.44 13.17 -3.03 -0.04 -27.48 16 16 C -0.10 -2.54 5.83 29.10 0.17 -2.37 16 17 C -0.07 -2.13 4.37 -19.87 -0.09 -2.22 16 18 C -0.11 -3.12 9.70 22.27 0.22 -2.90 16 19 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 20 C -0.11 -2.61 9.70 22.27 0.22 -2.40 16 21 C -0.11 -2.80 5.51 -19.86 -0.11 -2.91 16 22 C 0.11 2.27 6.06 71.24 0.43 2.70 16 23 O -0.41 -9.09 10.69 -148.98 -1.59 -10.68 16 24 C 0.02 0.33 11.01 113.37 1.25 1.58 16 25 C -0.10 -2.90 9.36 22.27 0.21 -2.69 16 26 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.05 2.01 5.64 -2.39 -0.01 2.00 16 28 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 29 H 0.07 3.86 5.95 -2.39 -0.01 3.85 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.40 13.51 8.54 -92.71 -0.79 12.72 16 33 H 0.12 2.64 8.09 -2.39 -0.02 2.62 16 34 H 0.12 2.61 8.09 -2.38 -0.02 2.60 16 35 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 37 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.06 1.23 8.09 -2.39 -0.02 1.21 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 43 H 0.12 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -69.65 356.13 3.23 -66.42 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: 0.20 Total: 28.89 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 4.63 Total: -18.06 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.00 Total: -83.14 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.63 Total: -38.16 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.65 3.23 -66.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187613186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.813 kcal (2) G-P(sol) polarization free energy of solvation -69.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds