Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 H 1.09003 * 109.46749 * 54.99936 * 3 2 1 5 5 C 1.53003 * 109.47204 * 174.99809 * 3 2 1 6 6 O 1.42899 * 109.47187 * 295.00203 * 3 2 1 7 7 C 1.35905 * 117.00096 * 155.79129 * 6 3 2 8 8 C 1.38750 * 120.05313 * 5.49590 * 7 6 3 9 9 C 1.38122 * 119.94343 * 180.02562 * 8 7 6 10 10 C 1.50696 * 119.97436 * 179.72575 * 9 8 7 11 11 C 1.38292 * 120.05244 * 359.97438 * 9 8 7 12 12 C 1.38240 * 120.11445 * 0.02562 * 11 9 8 13 13 C 1.38162 * 120.05245 * 359.97438 * 12 11 9 14 14 C 1.50705 * 120.02702 * 179.97438 * 13 12 11 15 15 N 1.46507 * 109.46706 * 260.02150 * 14 13 12 16 16 C 1.34777 * 119.99562 * 179.97438 * 15 14 13 17 17 O 1.21690 * 120.00265 * 359.97438 * 16 15 14 18 18 C 1.46374 * 119.99824 * 179.97438 * 16 15 14 19 19 H 1.07997 * 119.99910 * 6.29097 * 18 16 15 20 20 C 1.40049 * 120.00189 * 186.28849 * 18 16 15 21 21 N 1.30677 * 119.99649 * 353.60229 * 20 18 16 22 22 Si 1.86798 * 120.00067 * 173.60222 * 20 18 16 23 23 H 1.48500 * 109.47208 * 94.97870 * 22 20 18 24 24 H 1.48501 * 109.46854 * 214.97553 * 22 20 18 25 25 H 1.48493 * 109.47172 * 334.97829 * 22 20 18 26 26 H 1.09001 * 109.47179 * 59.99946 * 1 2 3 27 27 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47506 * 299.99934 * 1 2 3 29 29 H 1.09000 * 109.47506 * 240.00066 * 2 1 3 30 30 H 1.09001 * 109.47179 * 120.00054 * 2 1 3 31 31 H 1.08998 * 109.46715 * 60.00250 * 5 3 2 32 32 H 1.08997 * 109.46727 * 179.97438 * 5 3 2 33 33 H 1.08992 * 109.47346 * 299.99985 * 5 3 2 34 34 H 1.08000 * 120.03105 * 0.02562 * 8 7 6 35 35 H 1.08998 * 109.47488 * 89.99847 * 10 9 8 36 36 H 1.09004 * 109.47044 * 210.00266 * 10 9 8 37 37 H 1.09003 * 109.46989 * 329.99810 * 10 9 8 38 38 H 1.08006 * 119.93950 * 179.97438 * 11 9 8 39 39 H 1.08003 * 119.97059 * 179.97438 * 12 11 9 40 40 H 1.09004 * 109.46912 * 20.01419 * 14 13 12 41 41 H 1.08992 * 109.47330 * 140.01998 * 14 13 12 42 42 H 0.96998 * 120.00025 * 359.97438 * 15 14 13 43 43 H 0.97001 * 119.99392 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 8 1.6619 2.0814 -1.2210 7 6 1.5682 3.4371 -1.2047 8 6 1.9440 4.1461 -0.0727 9 6 1.8473 5.5238 -0.0584 10 6 2.2494 6.2941 1.1728 11 6 1.3769 6.1967 -1.1713 12 6 1.0019 5.4926 -2.3004 13 6 1.0968 4.1144 -2.3196 14 6 0.6872 3.3474 -3.5505 15 7 -0.6580 2.7995 -3.3594 16 6 -1.2345 2.0722 -4.3367 17 8 -0.6379 1.8710 -5.3780 18 6 -2.5783 1.5243 -4.1455 19 1 -3.1480 1.7859 -3.2662 20 6 -3.1252 0.6607 -5.1029 21 7 -2.4906 0.4425 -6.2242 22 14 -4.7617 -0.1789 -4.7770 23 1 -5.8569 0.6179 -5.3860 24 1 -4.7478 -1.5386 -5.3739 25 1 -4.9813 -0.2836 -3.3121 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9994 0.9053 -0.7161 32 1 3.9281 2.4720 0.1253 33 1 3.8532 0.9571 1.0571 34 1 2.3118 3.6211 0.7965 35 1 3.3069 6.5509 1.1115 36 1 1.6571 7.2067 1.2400 37 1 2.0749 5.6817 2.0575 38 1 1.3017 7.2740 -1.1580 39 1 0.6345 6.0204 -3.1681 40 1 0.6884 4.0154 -4.4120 41 1 1.3905 2.5325 -3.7216 42 1 -1.1337 2.9602 -2.5295 43 1 -2.8693 -0.1559 -6.8871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188005315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -73.585487 kcal Electronic energy + Delta-G solvation = -23623.841247 eV Core-core repulsion = 20247.494381 eV Total energy + Delta-G solvation = -3376.346867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37197 -37.98393 -37.03105 -34.48486 -33.65145 -32.40822 -31.50775 -29.99011 -29.77487 -28.11713 -26.09114 -24.13105 -23.65664 -22.79502 -20.92943 -20.45586 -19.52857 -17.74274 -17.12299 -16.03876 -15.49484 -15.30646 -15.09944 -14.55932 -14.24822 -13.98629 -13.93611 -13.71965 -13.61239 -13.16759 -13.09993 -12.91291 -12.51556 -12.43723 -12.11328 -11.93356 -11.71761 -11.49404 -11.44029 -11.15362 -11.05522 -10.92721 -10.83138 -10.74121 -10.53372 -10.40845 -10.30321 -10.15843 -8.76858 -8.66184 -7.99187 -7.44423 -7.33324 -6.10797 -4.54016 1.40264 1.59003 3.18034 3.25150 3.29277 3.33919 3.82009 4.18767 4.63551 4.68284 4.76330 4.86935 4.88927 4.98242 5.07012 5.20190 5.33008 5.34800 5.38825 5.46466 5.48373 5.53625 5.60596 5.66245 5.73240 5.81848 5.87223 5.89747 6.03315 6.08707 6.13623 6.20194 6.26902 6.47019 6.58204 6.59840 6.65854 6.86236 6.99437 7.51511 7.65164 8.05132 8.22323 8.44131 9.11099 9.67222 10.69293 10.89320 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.004679 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.064778 B = 5982.675725 C = 6953.567196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C 0.081 3.919 4 H 0.070 0.930 5 C -0.180 4.180 6 O -0.290 6.290 7 C 0.152 3.848 8 C -0.217 4.217 9 C -0.054 4.054 10 C -0.112 4.112 11 C -0.164 4.164 12 C -0.064 4.064 13 C -0.127 4.127 14 C 0.182 3.818 15 N -0.757 5.757 16 C 0.558 3.442 17 O -0.583 6.583 18 C -0.544 4.544 19 H 0.066 0.934 20 C 0.089 3.911 21 N -0.769 5.769 22 Si 0.904 3.096 23 H -0.273 1.273 24 H -0.279 1.279 25 H -0.265 1.265 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.379 0.621 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 6.216 16.862 20.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C 0.024 3.976 4 H 0.088 0.912 5 C -0.238 4.238 6 O -0.203 6.203 7 C 0.105 3.895 8 C -0.236 4.236 9 C -0.055 4.055 10 C -0.169 4.169 11 C -0.182 4.182 12 C -0.083 4.083 13 C -0.128 4.128 14 C 0.058 3.942 15 N -0.412 5.412 16 C 0.361 3.639 17 O -0.466 6.466 18 C -0.582 4.582 19 H 0.084 0.916 20 C -0.130 4.130 21 N -0.398 5.398 22 Si 0.729 3.271 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.189 1.189 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.210 0.790 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.859 5.810 15.730 19.452 hybrid contribution -0.900 -0.260 0.819 1.245 sum 8.959 5.551 16.549 19.620 Atomic orbital electron populations 1.21769 0.94581 1.02127 1.02824 1.21602 0.97384 0.93619 1.02814 1.22487 0.94584 0.94320 0.86196 0.91228 1.22394 0.95686 1.02888 1.02813 1.86292 1.83068 1.16144 1.34808 1.18842 0.94228 0.82804 0.93597 1.21079 1.09295 0.94517 0.98683 1.19628 0.97258 0.93025 0.95570 1.20776 1.01496 0.99707 0.94930 1.20859 1.04203 0.99558 0.93579 1.20953 0.96671 0.92557 0.98088 1.19598 1.03916 0.93563 0.95772 1.19577 0.87217 0.95702 0.91738 1.46098 1.15584 1.59211 1.20282 1.18191 0.86803 0.77103 0.81774 1.90592 1.66159 1.62046 1.27776 1.20856 0.99708 1.30040 1.07565 0.91591 1.25678 0.97887 0.95471 0.93988 1.70040 1.36248 1.28385 1.05120 0.86422 0.82489 0.78874 0.79344 1.19901 1.20463 1.18900 0.90735 0.92520 0.93302 0.90654 0.90610 0.91323 0.91953 0.91313 0.85641 0.91290 0.91504 0.91818 0.86246 0.85306 0.92912 0.92363 0.79047 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.81 37.16 0.36 -1.75 16 2 C -0.12 -1.40 5.64 -26.73 -0.15 -1.55 16 3 C 0.08 0.99 2.23 -26.73 -0.06 0.93 16 4 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 5 C -0.18 -1.85 9.15 37.16 0.34 -1.51 16 6 O -0.29 -4.72 8.57 -19.44 -0.17 -4.89 16 7 C 0.15 2.39 6.57 -39.22 -0.26 2.13 16 8 C -0.22 -2.83 7.86 -39.43 -0.31 -3.14 16 9 C -0.05 -0.65 5.88 -104.65 -0.62 -1.27 16 10 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 11 C -0.16 -2.05 9.70 -39.56 -0.38 -2.43 16 12 C -0.06 -0.94 9.66 -39.61 -0.38 -1.32 16 13 C -0.13 -2.16 5.26 -104.47 -0.55 -2.71 16 14 C 0.18 3.84 5.46 -5.19 -0.03 3.81 16 15 N -0.76 -17.96 5.54 -62.90 -0.35 -18.31 16 16 C 0.56 16.42 7.74 -12.99 -0.10 16.31 16 17 O -0.58 -19.48 15.05 5.20 0.08 -19.40 16 18 C -0.54 -15.80 9.53 -35.63 -0.34 -16.14 16 19 H 0.07 1.77 7.86 -52.49 -0.41 1.35 16 20 C 0.09 2.54 5.49 -17.36 -0.10 2.45 16 21 N -0.77 -23.58 11.86 55.55 0.66 -22.92 16 22 Si 0.90 20.56 29.56 -169.99 -5.03 15.54 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 26 H 0.07 1.27 7.82 -51.93 -0.41 0.87 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.64 6.82 -51.93 -0.35 0.28 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.13 1.38 5.40 -52.49 -0.28 1.10 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.13 1.75 8.04 -52.48 -0.42 1.33 16 40 H 0.05 1.14 8.00 -51.93 -0.42 0.72 16 41 H 0.06 1.34 7.85 -51.93 -0.41 0.93 16 42 H 0.38 8.24 8.44 -40.82 -0.34 7.90 16 43 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -35.11 358.02 -8.35 -43.46 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -6.73 Total: 7.91 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.21 Total: -6.79 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.31 Total: -41.23 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.09 Total: -24.29 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.11 -8.35 -43.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188005315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.126 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds