Wall clock time and date at job start Tue Mar 31 2020 06:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47233 * 2 1 4 4 H 1.09003 * 109.46749 * 54.99936 * 3 2 1 5 5 C 1.53003 * 109.47204 * 174.99809 * 3 2 1 6 6 O 1.42899 * 109.47187 * 295.00203 * 3 2 1 7 7 C 1.35905 * 117.00096 * 155.79129 * 6 3 2 8 8 C 1.38750 * 120.05313 * 5.49590 * 7 6 3 9 9 C 1.38122 * 119.94343 * 180.02562 * 8 7 6 10 10 C 1.50696 * 119.97436 * 179.72575 * 9 8 7 11 11 C 1.38292 * 120.05244 * 359.97438 * 9 8 7 12 12 C 1.38240 * 120.11445 * 0.02562 * 11 9 8 13 13 C 1.38162 * 120.05245 * 359.97438 * 12 11 9 14 14 C 1.50705 * 120.02702 * 179.97438 * 13 12 11 15 15 N 1.46507 * 109.46706 * 260.02150 * 14 13 12 16 16 C 1.34777 * 119.99562 * 179.97438 * 15 14 13 17 17 O 1.21690 * 120.00265 * 359.97438 * 16 15 14 18 18 C 1.46374 * 119.99824 * 179.97438 * 16 15 14 19 19 H 1.07997 * 119.99910 * 6.29097 * 18 16 15 20 20 C 1.40049 * 120.00189 * 186.28849 * 18 16 15 21 21 N 1.30677 * 119.99649 * 353.60229 * 20 18 16 22 22 Si 1.86798 * 120.00067 * 173.60222 * 20 18 16 23 23 H 1.48500 * 109.47208 * 94.97870 * 22 20 18 24 24 H 1.48501 * 109.46854 * 214.97553 * 22 20 18 25 25 H 1.48493 * 109.47172 * 334.97829 * 22 20 18 26 26 H 1.09001 * 109.47179 * 59.99946 * 1 2 3 27 27 H 1.09002 * 109.47317 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47506 * 299.99934 * 1 2 3 29 29 H 1.09000 * 109.47506 * 240.00066 * 2 1 3 30 30 H 1.09001 * 109.47179 * 120.00054 * 2 1 3 31 31 H 1.08998 * 109.46715 * 60.00250 * 5 3 2 32 32 H 1.08997 * 109.46727 * 179.97438 * 5 3 2 33 33 H 1.08992 * 109.47346 * 299.99985 * 5 3 2 34 34 H 1.08000 * 120.03105 * 0.02562 * 8 7 6 35 35 H 1.08998 * 109.47488 * 89.99847 * 10 9 8 36 36 H 1.09004 * 109.47044 * 210.00266 * 10 9 8 37 37 H 1.09003 * 109.46989 * 329.99810 * 10 9 8 38 38 H 1.08006 * 119.93950 * 179.97438 * 11 9 8 39 39 H 1.08003 * 119.97059 * 179.97438 * 12 11 9 40 40 H 1.09004 * 109.46912 * 20.01419 * 14 13 12 41 41 H 1.08992 * 109.47330 * 140.01998 * 14 13 12 42 42 H 0.96998 * 120.00025 * 359.97438 * 15 14 13 43 43 H 0.97001 * 119.99392 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 8 1.6619 2.0814 -1.2210 7 6 1.5682 3.4371 -1.2047 8 6 1.9440 4.1461 -0.0727 9 6 1.8473 5.5238 -0.0584 10 6 2.2494 6.2941 1.1728 11 6 1.3769 6.1967 -1.1713 12 6 1.0019 5.4926 -2.3004 13 6 1.0968 4.1144 -2.3196 14 6 0.6872 3.3474 -3.5505 15 7 -0.6580 2.7995 -3.3594 16 6 -1.2345 2.0722 -4.3367 17 8 -0.6379 1.8710 -5.3780 18 6 -2.5783 1.5243 -4.1455 19 1 -3.1480 1.7859 -3.2662 20 6 -3.1252 0.6607 -5.1029 21 7 -2.4906 0.4425 -6.2242 22 14 -4.7617 -0.1789 -4.7770 23 1 -5.8569 0.6179 -5.3860 24 1 -4.7478 -1.5386 -5.3739 25 1 -4.9813 -0.2836 -3.3121 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9994 0.9053 -0.7161 32 1 3.9281 2.4720 0.1253 33 1 3.8532 0.9571 1.0571 34 1 2.3118 3.6211 0.7965 35 1 3.3069 6.5509 1.1115 36 1 1.6571 7.2067 1.2400 37 1 2.0749 5.6817 2.0575 38 1 1.3017 7.2740 -1.1580 39 1 0.6345 6.0204 -3.1681 40 1 0.6884 4.0154 -4.4120 41 1 1.3905 2.5325 -3.7216 42 1 -1.1337 2.9602 -2.5295 43 1 -2.8693 -0.1559 -6.8871 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188005315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:27 Heat of formation + Delta-G solvation = -96.839618 kcal Electronic energy + Delta-G solvation = -23624.849622 eV Core-core repulsion = 20247.494381 eV Total energy + Delta-G solvation = -3377.355242 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49253 -39.40237 -38.85084 -35.87369 -35.02448 -34.52080 -33.07454 -30.92828 -30.85781 -29.63480 -27.95165 -25.35187 -24.88817 -23.85763 -22.11229 -21.61798 -21.50974 -19.41648 -18.58540 -17.48785 -17.19616 -16.72109 -16.34923 -15.93613 -15.69086 -15.55403 -15.28810 -14.89411 -14.64210 -14.59216 -14.32928 -14.03938 -13.92127 -13.51663 -13.45235 -13.17441 -13.08690 -12.82894 -12.71770 -12.64146 -12.60183 -12.43448 -12.26721 -12.03046 -11.97784 -11.88071 -11.51108 -11.40059 -10.92702 -10.00274 -9.63280 -9.46028 -9.02475 -8.28692 -6.84525 0.29158 0.51083 1.38369 1.40401 1.56381 2.24744 2.31641 2.47823 2.70019 3.36815 3.61385 3.68455 3.77096 3.85833 3.96265 4.03684 4.09414 4.20930 4.30685 4.41063 4.55189 4.63159 4.64456 4.68862 4.74588 4.78203 4.87623 4.89024 4.91113 5.00146 5.03716 5.19054 5.22631 5.28416 5.31518 5.35874 5.43813 5.56634 5.66160 5.87765 5.94296 6.20949 6.28026 6.59150 6.86662 7.55452 8.49693 8.67897 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015440 B = 0.004679 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.064778 B = 5982.675725 C = 6953.567196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.087 0.913 5 C -0.174 4.174 6 O -0.324 6.324 7 C 0.141 3.859 8 C -0.215 4.215 9 C -0.044 4.044 10 C -0.111 4.111 11 C -0.162 4.162 12 C -0.069 4.069 13 C -0.159 4.159 14 C 0.193 3.807 15 N -0.741 5.741 16 C 0.540 3.460 17 O -0.635 6.635 18 C -0.572 4.572 19 H 0.084 0.916 20 C 0.030 3.970 21 N -0.822 5.822 22 Si 0.997 3.003 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.249 1.249 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.389 0.611 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.004 7.083 20.698 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C 0.017 3.983 4 H 0.104 0.896 5 C -0.231 4.231 6 O -0.238 6.238 7 C 0.095 3.905 8 C -0.233 4.233 9 C -0.045 4.045 10 C -0.168 4.168 11 C -0.180 4.180 12 C -0.087 4.087 13 C -0.160 4.160 14 C 0.069 3.931 15 N -0.395 5.395 16 C 0.344 3.656 17 O -0.523 6.523 18 C -0.608 4.608 19 H 0.102 0.898 20 C -0.185 4.185 21 N -0.452 5.452 22 Si 0.816 3.184 23 H -0.185 1.185 24 H -0.196 1.196 25 H -0.172 1.172 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.167 0.833 39 H 0.148 0.852 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.221 0.779 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.454 6.716 19.622 22.792 hybrid contribution -0.682 -0.464 -0.308 0.880 sum 8.772 6.252 19.314 22.115 Atomic orbital electron populations 1.21729 0.95963 1.01980 1.01403 1.21656 0.96114 0.93952 1.03517 1.22783 0.96118 0.94066 0.85341 0.89566 1.22355 0.93832 1.03157 1.03751 1.86267 1.83511 1.16795 1.37270 1.18980 0.94551 0.82868 0.94102 1.21328 1.08649 0.95133 0.98231 1.20138 0.94890 0.92841 0.96596 1.20871 1.02605 0.99978 0.93305 1.21183 1.03158 1.00976 0.92674 1.21056 0.96764 0.91596 0.99321 1.19302 1.07530 0.94394 0.94823 1.19400 0.85004 0.94674 0.93997 1.45789 1.16538 1.57769 1.19383 1.18635 0.87518 0.77493 0.81958 1.90538 1.67501 1.64234 1.30046 1.21359 1.00001 1.30813 1.08664 0.89832 1.26979 1.02827 0.95643 0.93061 1.70208 1.39047 1.29306 1.06612 0.85022 0.75859 0.77460 0.80031 1.18462 1.19573 1.17233 0.95280 0.92071 0.91420 0.92841 0.86873 0.92840 0.91790 0.88222 0.83258 0.89708 0.90044 0.90460 0.83290 0.85161 0.94361 0.95513 0.77852 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.81 71.98 0.71 -3.47 16 2 C -0.12 -2.69 5.64 30.59 0.17 -2.52 16 3 C 0.07 1.71 2.23 30.60 0.07 1.78 16 4 H 0.09 1.72 6.36 -2.39 -0.02 1.70 16 5 C -0.17 -3.24 9.15 71.98 0.66 -2.58 16 6 O -0.32 -10.95 8.57 -92.49 -0.79 -11.74 16 7 C 0.14 4.48 6.57 22.50 0.15 4.63 16 8 C -0.22 -5.11 7.86 22.36 0.18 -4.94 16 9 C -0.04 -0.91 5.88 -19.88 -0.12 -1.03 16 10 C -0.11 -1.38 10.01 71.23 0.71 -0.66 16 11 C -0.16 -3.65 9.70 22.28 0.22 -3.44 16 12 C -0.07 -2.01 9.66 22.25 0.22 -1.79 16 13 C -0.16 -5.64 5.26 -19.77 -0.10 -5.75 16 14 C 0.19 8.85 5.46 85.63 0.47 9.32 16 15 N -0.74 -37.55 5.54 -471.12 -2.61 -40.16 16 16 C 0.54 33.69 7.74 86.36 0.67 34.36 16 17 O -0.64 -45.44 15.05 -4.32 -0.06 -45.50 16 18 C -0.57 -34.25 9.53 24.83 0.24 -34.01 16 19 H 0.08 4.54 7.86 -2.91 -0.02 4.51 16 20 C 0.03 1.73 5.49 85.30 0.47 2.20 16 21 N -0.82 -52.34 11.86 21.84 0.26 -52.08 16 22 Si 1.00 42.48 29.56 68.60 2.03 44.50 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 26 H 0.03 1.03 7.82 -2.39 -0.02 1.01 16 27 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 1.17 6.82 -2.39 -0.02 1.15 16 33 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.15 2.76 5.40 -2.91 -0.02 2.75 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.83 8.08 -2.38 -0.02 0.81 16 37 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 38 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.13 3.62 8.04 -2.91 -0.02 3.60 16 40 H 0.04 1.81 8.00 -2.38 -0.02 1.79 16 41 H 0.03 1.36 7.85 -2.39 -0.02 1.34 16 42 H 0.39 17.85 8.44 -92.71 -0.78 17.07 16 43 H 0.27 15.74 8.29 -92.71 -0.77 14.97 16 Total: -1.00 -82.53 358.02 3.73 -78.80 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.22 Total: 34.09 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 4.69 Total: -7.91 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -2.35 Total: -92.24 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.86 Total: -57.25 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -82.53 3.73 -78.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188005315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.041 kcal (2) G-P(sol) polarization free energy of solvation -82.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds