Wall clock time and date at job start Tue Mar 31 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47052 * 2 1 4 4 H 1.08999 * 109.47384 * 305.00013 * 3 2 1 5 5 C 1.53005 * 109.47326 * 184.99758 * 3 2 1 6 6 O 1.42899 * 109.47484 * 64.99827 * 3 2 1 7 7 C 1.35901 * 117.00454 * 204.82604 * 6 3 2 8 8 C 1.38750 * 120.05339 * 354.58188 * 7 6 3 9 9 C 1.38122 * 119.94459 * 180.02562 * 8 7 6 10 10 C 1.50699 * 119.97110 * 179.97438 * 9 8 7 11 11 C 1.38292 * 120.05609 * 359.72885 * 9 8 7 12 12 C 1.38247 * 120.10759 * 0.55109 * 11 9 8 13 13 C 1.38166 * 120.05554 * 359.44805 * 12 11 9 14 14 C 1.50700 * 120.03069 * 180.25648 * 13 12 11 15 15 N 1.46498 * 109.47037 * 260.00251 * 14 13 12 16 16 C 1.34773 * 120.00409 * 179.97438 * 15 14 13 17 17 O 1.21695 * 119.99603 * 359.97438 * 16 15 14 18 18 C 1.46367 * 120.00285 * 179.97438 * 16 15 14 19 19 H 1.07997 * 120.00605 * 0.02562 * 18 16 15 20 20 C 1.40060 * 119.99917 * 179.97438 * 18 16 15 21 21 N 1.30665 * 119.99907 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99897 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47174 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47261 * 120.00092 * 22 20 18 25 25 H 1.48500 * 109.47260 * 240.00047 * 22 20 18 26 26 H 1.09003 * 109.47286 * 300.00197 * 1 2 3 27 27 H 1.08997 * 109.47352 * 60.00316 * 1 2 3 28 28 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47283 * 239.99814 * 2 1 3 30 30 H 1.08997 * 109.47352 * 119.99684 * 2 1 3 31 31 H 1.08999 * 109.47350 * 179.97438 * 5 3 2 32 32 H 1.08990 * 109.47242 * 300.00192 * 5 3 2 33 33 H 1.09009 * 109.46813 * 59.99975 * 5 3 2 34 34 H 1.08001 * 120.03055 * 0.02562 * 8 7 6 35 35 H 1.09001 * 109.47456 * 90.00340 * 10 9 8 36 36 H 1.08999 * 109.46735 * 209.99663 * 10 9 8 37 37 H 1.08997 * 109.47501 * 330.00076 * 10 9 8 38 38 H 1.07997 * 119.94566 * 180.30068 * 11 9 8 39 39 H 1.08000 * 119.97003 * 179.72465 * 12 11 9 40 40 H 1.09003 * 109.46645 * 19.99467 * 14 13 12 41 41 H 1.08997 * 109.47615 * 139.99698 * 14 13 12 42 42 H 0.97004 * 119.99878 * 359.97438 * 15 14 13 43 43 H 0.97000 * 119.99819 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 1.5556 3.4362 1.2013 8 6 1.9178 4.1452 0.0650 9 6 1.8093 5.5220 0.0477 10 6 2.2031 6.2927 -1.1860 11 6 1.3349 6.1935 1.1596 12 6 0.9788 5.4898 2.2951 13 6 1.0854 4.1124 2.3174 14 6 0.6916 3.3454 3.5535 15 7 1.8933 2.9974 4.3157 16 6 1.7842 2.3058 5.4673 17 8 0.6873 1.9707 5.8741 18 6 2.9848 1.9576 6.2285 19 1 3.9583 2.2553 5.8678 20 6 2.8713 1.2393 7.4255 21 7 1.6934 0.8804 7.8629 22 14 4.4035 0.7956 8.3975 23 1 5.6038 1.3146 7.6936 24 1 4.3231 1.4000 9.7515 25 1 4.5019 -0.6811 8.5196 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9281 2.4721 -0.1261 32 1 3.9994 0.9054 0.7161 33 1 3.8532 0.9570 -1.0571 34 1 2.2842 3.6210 -0.8053 35 1 1.3376 6.3985 -1.8401 36 1 2.5634 7.2802 -0.8978 37 1 2.9930 5.7571 -1.7124 38 1 1.2462 7.2697 1.1424 39 1 0.6127 6.0168 3.1638 40 1 0.0362 3.9611 4.1696 41 1 0.1682 2.4342 3.2643 42 1 2.7676 3.2649 3.9916 43 1 1.6148 0.3826 8.6916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188005342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:31 Heat of formation + Delta-G solvation = -73.602941 kcal Electronic energy + Delta-G solvation = -23493.228502 eV Core-core repulsion = 20116.880878 eV Total energy + Delta-G solvation = -3376.347624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37451 -37.99341 -37.02509 -34.50627 -33.67696 -32.40549 -31.50807 -30.02891 -29.78279 -28.11068 -26.08815 -24.16735 -23.66804 -22.84269 -20.93898 -20.47133 -19.52792 -17.72679 -17.14441 -16.06050 -15.49604 -15.29258 -15.09053 -14.60450 -14.19836 -14.12943 -13.88439 -13.72624 -13.66974 -13.17240 -13.12693 -12.92717 -12.52379 -12.40125 -12.08183 -12.01042 -11.73778 -11.56593 -11.41460 -11.17973 -11.05500 -11.02637 -10.85533 -10.74643 -10.54352 -10.44286 -10.30818 -10.12093 -8.78145 -8.66065 -7.99412 -7.44122 -7.32655 -6.09555 -4.54122 1.40216 1.58997 3.17692 3.25560 3.30382 3.33534 3.81426 4.19155 4.61068 4.68638 4.75593 4.85345 4.89269 4.95740 5.06446 5.19339 5.26582 5.35045 5.39203 5.44975 5.47905 5.53433 5.54997 5.65519 5.73234 5.77887 5.86006 5.89032 5.92916 6.08891 6.12381 6.16009 6.24717 6.31887 6.48138 6.59624 6.65578 6.86034 6.99316 7.51808 7.64824 8.05883 8.23181 8.44596 9.11436 9.67788 10.69931 10.89973 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.004524 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.598546 B = 6188.352294 C = 7056.582353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.069 0.931 5 C -0.181 4.181 6 O -0.290 6.290 7 C 0.152 3.848 8 C -0.217 4.217 9 C -0.054 4.054 10 C -0.112 4.112 11 C -0.164 4.164 12 C -0.064 4.064 13 C -0.127 4.127 14 C 0.183 3.817 15 N -0.757 5.757 16 C 0.557 3.443 17 O -0.583 6.583 18 C -0.544 4.544 19 H 0.066 0.934 20 C 0.088 3.912 21 N -0.769 5.769 22 Si 0.905 3.095 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.379 0.621 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.000 5.611 -19.688 20.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.024 3.976 4 H 0.086 0.914 5 C -0.238 4.238 6 O -0.203 6.203 7 C 0.105 3.895 8 C -0.236 4.236 9 C -0.055 4.055 10 C -0.169 4.169 11 C -0.182 4.182 12 C -0.083 4.083 13 C -0.129 4.129 14 C 0.058 3.942 15 N -0.412 5.412 16 C 0.361 3.639 17 O -0.466 6.466 18 C -0.581 4.581 19 H 0.084 0.916 20 C -0.131 4.131 21 N -0.398 5.398 22 Si 0.730 3.270 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.210 0.790 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.024 5.106 -19.080 19.778 hybrid contribution 1.295 -0.008 0.066 1.297 sum 2.320 5.098 -19.014 19.822 Atomic orbital electron populations 1.21749 0.95146 1.01856 1.02307 1.21617 0.96898 0.93976 1.03182 1.22477 0.94933 0.94069 0.86096 0.91352 1.22381 0.95443 1.03051 1.02915 1.86304 1.83044 1.16251 1.34658 1.18842 0.94271 0.82820 0.93541 1.21073 1.09443 0.94525 0.98532 1.19628 0.97187 0.93035 0.95622 1.20775 1.01293 0.99714 0.95130 1.20859 1.04232 0.99595 0.93512 1.20956 0.96994 0.92474 0.97835 1.19604 1.04305 0.93602 0.95346 1.19570 0.89903 0.97056 0.87670 1.46096 1.06351 1.62780 1.25981 1.18198 0.90391 0.76886 0.78461 1.90592 1.28941 1.57385 1.69648 1.20912 0.92542 1.37635 1.07010 0.91553 1.25692 0.96371 0.93995 0.97051 1.70039 1.23409 1.28096 1.18304 0.86361 0.82458 0.78516 0.79659 1.18839 1.20211 1.20230 0.91576 0.93205 0.92513 0.90435 0.90338 0.91905 0.90971 0.91400 0.85639 0.91292 0.91503 0.91809 0.86240 0.85302 0.92917 0.92401 0.79007 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.81 37.15 0.36 -1.42 16 2 C -0.12 -1.36 5.64 -26.73 -0.15 -1.51 16 3 C 0.08 0.98 2.23 -26.73 -0.06 0.92 16 4 H 0.07 0.74 6.32 -51.93 -0.33 0.41 16 5 C -0.18 -1.96 9.17 37.16 0.34 -1.62 16 6 O -0.29 -4.71 8.57 -19.43 -0.17 -4.88 16 7 C 0.15 2.39 6.57 -39.22 -0.26 2.13 16 8 C -0.22 -2.83 7.89 -39.43 -0.31 -3.14 16 9 C -0.05 -0.65 5.88 -104.64 -0.62 -1.27 16 10 C -0.11 -0.97 10.01 36.01 0.36 -0.60 16 11 C -0.16 -2.05 9.70 -39.56 -0.38 -2.43 16 12 C -0.06 -0.94 9.67 -39.60 -0.38 -1.32 16 13 C -0.13 -2.17 5.26 -104.47 -0.55 -2.72 16 14 C 0.18 3.86 5.46 -5.19 -0.03 3.83 16 15 N -0.76 -18.19 5.54 -62.91 -0.35 -18.54 16 16 C 0.56 16.55 7.75 -12.99 -0.10 16.45 16 17 O -0.58 -19.56 15.02 5.19 0.08 -19.49 16 18 C -0.54 -15.94 9.54 -35.63 -0.34 -16.28 16 19 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 20 C 0.09 2.53 5.50 -17.36 -0.10 2.44 16 21 N -0.77 -23.70 11.83 55.55 0.66 -23.04 16 22 Si 0.91 20.70 29.56 -169.99 -5.02 15.67 16 23 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H 0.07 0.93 7.82 -51.93 -0.41 0.53 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.69 6.90 -51.93 -0.36 0.33 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.13 1.38 5.43 -52.49 -0.28 1.10 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.13 1.75 8.04 -52.49 -0.42 1.33 16 40 H 0.05 1.14 8.00 -51.93 -0.42 0.72 16 41 H 0.06 1.33 7.85 -51.93 -0.41 0.92 16 42 H 0.38 8.38 8.44 -40.82 -0.34 8.04 16 43 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -35.47 358.08 -8.35 -43.82 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.73 Total: 7.61 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -2.21 Total: -6.55 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.31 Total: -41.59 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.09 Total: -24.36 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.47 -8.35 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188005342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.784 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds