Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47052 * 2 1 4 4 H 1.08999 * 109.47384 * 305.00013 * 3 2 1 5 5 C 1.53005 * 109.47326 * 184.99758 * 3 2 1 6 6 O 1.42899 * 109.47484 * 64.99827 * 3 2 1 7 7 C 1.35901 * 117.00454 * 204.82604 * 6 3 2 8 8 C 1.38750 * 120.05339 * 354.58188 * 7 6 3 9 9 C 1.38122 * 119.94459 * 180.02562 * 8 7 6 10 10 C 1.50699 * 119.97110 * 179.97438 * 9 8 7 11 11 C 1.38292 * 120.05609 * 359.72885 * 9 8 7 12 12 C 1.38247 * 120.10759 * 0.55109 * 11 9 8 13 13 C 1.38166 * 120.05554 * 359.44805 * 12 11 9 14 14 C 1.50700 * 120.03069 * 180.25648 * 13 12 11 15 15 N 1.46498 * 109.47037 * 260.00251 * 14 13 12 16 16 C 1.34773 * 120.00409 * 179.97438 * 15 14 13 17 17 O 1.21695 * 119.99603 * 359.97438 * 16 15 14 18 18 C 1.46367 * 120.00285 * 179.97438 * 16 15 14 19 19 H 1.07997 * 120.00605 * 0.02562 * 18 16 15 20 20 C 1.40060 * 119.99917 * 179.97438 * 18 16 15 21 21 N 1.30665 * 119.99907 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99897 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47174 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47261 * 120.00092 * 22 20 18 25 25 H 1.48500 * 109.47260 * 240.00047 * 22 20 18 26 26 H 1.09003 * 109.47286 * 300.00197 * 1 2 3 27 27 H 1.08997 * 109.47352 * 60.00316 * 1 2 3 28 28 H 1.08999 * 109.47047 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47283 * 239.99814 * 2 1 3 30 30 H 1.08997 * 109.47352 * 119.99684 * 2 1 3 31 31 H 1.08999 * 109.47350 * 179.97438 * 5 3 2 32 32 H 1.08990 * 109.47242 * 300.00192 * 5 3 2 33 33 H 1.09009 * 109.46813 * 59.99975 * 5 3 2 34 34 H 1.08001 * 120.03055 * 0.02562 * 8 7 6 35 35 H 1.09001 * 109.47456 * 90.00340 * 10 9 8 36 36 H 1.08999 * 109.46735 * 209.99663 * 10 9 8 37 37 H 1.08997 * 109.47501 * 330.00076 * 10 9 8 38 38 H 1.07997 * 119.94566 * 180.30068 * 11 9 8 39 39 H 1.08000 * 119.97003 * 179.72465 * 12 11 9 40 40 H 1.09003 * 109.46645 * 19.99467 * 14 13 12 41 41 H 1.08997 * 109.47615 * 139.99698 * 14 13 12 42 42 H 0.97004 * 119.99878 * 359.97438 * 15 14 13 43 43 H 0.97000 * 119.99819 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 1.5556 3.4362 1.2013 8 6 1.9178 4.1452 0.0650 9 6 1.8093 5.5220 0.0477 10 6 2.2031 6.2927 -1.1860 11 6 1.3349 6.1935 1.1596 12 6 0.9788 5.4898 2.2951 13 6 1.0854 4.1124 2.3174 14 6 0.6916 3.3454 3.5535 15 7 1.8933 2.9974 4.3157 16 6 1.7842 2.3058 5.4673 17 8 0.6873 1.9707 5.8741 18 6 2.9848 1.9576 6.2285 19 1 3.9583 2.2553 5.8678 20 6 2.8713 1.2393 7.4255 21 7 1.6934 0.8804 7.8629 22 14 4.4035 0.7956 8.3975 23 1 5.6038 1.3146 7.6936 24 1 4.3231 1.4000 9.7515 25 1 4.5019 -0.6811 8.5196 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9281 2.4721 -0.1261 32 1 3.9994 0.9054 0.7161 33 1 3.8532 0.9570 -1.0571 34 1 2.2842 3.6210 -0.8053 35 1 1.3376 6.3985 -1.8401 36 1 2.5634 7.2802 -0.8978 37 1 2.9930 5.7571 -1.7124 38 1 1.2462 7.2697 1.1424 39 1 0.6127 6.0168 3.1638 40 1 0.0362 3.9611 4.1696 41 1 0.1682 2.4342 3.2643 42 1 2.7676 3.2649 3.9916 43 1 1.6148 0.3826 8.6916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188005342.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = -97.132294 kcal Electronic energy + Delta-G solvation = -23494.248811 eV Core-core repulsion = 20116.880878 eV Total energy + Delta-G solvation = -3377.367933 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49462 -39.41339 -38.85255 -35.88200 -35.03184 -34.52367 -33.08676 -30.94233 -30.86140 -29.63601 -27.95812 -25.36353 -24.90343 -23.87017 -22.11161 -21.66075 -21.48667 -19.41839 -18.59698 -17.51672 -17.20345 -16.70591 -16.35675 -15.92806 -15.69920 -15.54021 -15.34487 -14.89904 -14.65593 -14.58906 -14.33058 -14.05655 -13.88092 -13.60752 -13.42479 -13.16063 -13.06405 -12.84046 -12.75433 -12.66124 -12.60766 -12.46644 -12.25095 -12.00478 -11.98773 -11.89744 -11.50816 -11.41862 -10.95224 -10.00825 -9.63691 -9.46744 -9.02949 -8.28534 -6.86214 0.28963 0.50932 1.38425 1.39363 1.57336 2.24553 2.31658 2.46991 2.69204 3.37056 3.60814 3.67442 3.76960 3.85174 3.95812 4.02929 4.08621 4.20015 4.30318 4.39220 4.54153 4.61005 4.63065 4.68730 4.74504 4.77729 4.87312 4.88824 4.90608 4.99845 5.01349 5.17752 5.23190 5.28086 5.30693 5.31808 5.40231 5.56486 5.65962 5.86913 5.94080 6.20314 6.27178 6.58937 6.85728 7.54488 8.48985 8.67439 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.004524 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.598546 B = 6188.352294 C = 7056.582353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.072 3.928 4 H 0.089 0.911 5 C -0.175 4.175 6 O -0.324 6.324 7 C 0.141 3.859 8 C -0.215 4.215 9 C -0.044 4.044 10 C -0.111 4.111 11 C -0.162 4.162 12 C -0.069 4.069 13 C -0.159 4.159 14 C 0.194 3.806 15 N -0.743 5.743 16 C 0.538 3.462 17 O -0.634 6.634 18 C -0.572 4.572 19 H 0.084 0.916 20 C 0.028 3.972 21 N -0.822 5.822 22 Si 1.000 3.000 23 H -0.248 1.248 24 H -0.266 1.266 25 H -0.267 1.267 26 H 0.028 0.972 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.149 0.851 39 H 0.130 0.870 40 H 0.038 0.962 41 H 0.027 0.973 42 H 0.389 0.611 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 6.806 -22.260 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.017 3.983 4 H 0.107 0.893 5 C -0.232 4.232 6 O -0.238 6.238 7 C 0.095 3.905 8 C -0.233 4.233 9 C -0.044 4.044 10 C -0.168 4.168 11 C -0.180 4.180 12 C -0.087 4.087 13 C -0.161 4.161 14 C 0.070 3.930 15 N -0.396 5.396 16 C 0.343 3.657 17 O -0.522 6.522 18 C -0.609 4.609 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.452 5.452 22 Si 0.819 3.181 23 H -0.171 1.171 24 H -0.190 1.190 25 H -0.192 1.192 26 H 0.047 0.953 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.131 0.869 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.118 0.882 34 H 0.167 0.833 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.167 0.833 39 H 0.148 0.852 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.222 0.778 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.570 6.336 -21.709 22.895 hybrid contribution 0.454 -0.336 0.740 0.931 sum 4.024 6.001 -20.969 22.179 Atomic orbital electron populations 1.21729 0.95629 1.02173 1.01355 1.21678 0.96491 0.93873 1.03547 1.22788 0.96012 0.94162 0.85348 0.89327 1.22353 0.94150 1.03101 1.03612 1.86279 1.83433 1.16892 1.37204 1.18983 0.94547 0.82900 0.94073 1.21323 1.08803 0.95136 0.98082 1.20139 0.94808 0.92848 0.96651 1.20871 1.02386 0.99980 0.93526 1.21183 1.03183 1.01007 0.92611 1.21059 0.97042 0.91520 0.99119 1.19307 1.08071 0.94452 0.94229 1.19398 0.88373 0.96062 0.89212 1.45806 1.07865 1.61214 1.24740 1.18650 0.90127 0.77163 0.79797 1.90538 1.30611 1.59657 1.71418 1.21420 0.93000 1.38453 1.08035 0.89833 1.27002 1.00716 0.92990 0.97925 1.70205 1.26908 1.28819 1.19257 0.84950 0.76994 0.78526 0.77637 1.17116 1.19024 1.19169 0.95309 0.91266 0.91609 0.86897 0.92983 0.91888 0.93157 0.88202 0.83255 0.89678 0.90053 0.90464 0.83280 0.85172 0.94383 0.95444 0.77833 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 9.81 71.98 0.71 -2.87 16 2 C -0.12 -2.66 5.64 30.59 0.17 -2.48 16 3 C 0.07 1.70 2.23 30.60 0.07 1.77 16 4 H 0.09 1.70 6.32 -2.39 -0.02 1.68 16 5 C -0.17 -3.52 9.17 71.98 0.66 -2.86 16 6 O -0.32 -10.95 8.57 -92.43 -0.79 -11.74 16 7 C 0.14 4.49 6.57 22.51 0.15 4.63 16 8 C -0.22 -5.12 7.89 22.36 0.18 -4.94 16 9 C -0.04 -0.91 5.88 -19.88 -0.12 -1.03 16 10 C -0.11 -1.38 10.01 71.24 0.71 -0.67 16 11 C -0.16 -3.66 9.70 22.28 0.22 -3.44 16 12 C -0.07 -2.01 9.67 22.25 0.22 -1.80 16 13 C -0.16 -5.66 5.26 -19.77 -0.10 -5.76 16 14 C 0.19 8.89 5.46 85.63 0.47 9.36 16 15 N -0.74 -37.94 5.54 -471.15 -2.61 -40.55 16 16 C 0.54 33.83 7.75 86.36 0.67 34.50 16 17 O -0.63 -45.52 15.02 -4.33 -0.07 -45.58 16 18 C -0.57 -34.54 9.54 24.83 0.24 -34.30 16 19 H 0.08 4.58 7.85 -2.91 -0.02 4.56 16 20 C 0.03 1.66 5.50 85.31 0.47 2.13 16 21 N -0.82 -52.47 11.83 21.84 0.26 -52.21 16 22 Si 1.00 42.67 29.56 68.60 2.03 44.70 16 23 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 26 H 0.03 0.87 7.82 -2.39 -0.02 0.85 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.25 6.90 -2.39 -0.02 1.24 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.15 2.77 5.43 -2.91 -0.02 2.75 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 37 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 38 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.13 3.63 8.04 -2.91 -0.02 3.61 16 40 H 0.04 1.81 8.00 -2.39 -0.02 1.79 16 41 H 0.03 1.40 7.85 -2.39 -0.02 1.38 16 42 H 0.39 18.03 8.44 -92.71 -0.78 17.25 16 43 H 0.27 15.74 8.29 -92.71 -0.77 14.98 16 Total: -1.00 -83.02 358.08 3.74 -79.29 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.22 Total: 33.87 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: 4.70 Total: -7.77 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -2.35 Total: -92.76 kcal Atomic # 8 Polarization: -56.47 SS G_CDS: -0.86 Total: -57.33 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -83.02 3.74 -79.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188005342.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.845 kcal (2) G-P(sol) polarization free energy of solvation -83.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds